RNA–Protein interactions for RNA: ENST00000360535.8

CLIP3-201, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLIP3, Length 3,370 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-201ENST00000360535 DOK4Q8TEW6 326 aa11.5□□□□□ -0.57
CLIP3-201ENST00000360535 NACC2Q96BF6 587 aa11.5□□□□□ -0.57
CLIP3-201ENST00000360535 ZSWIM3Q96MP5 696 aa11.5□□□□□ -0.57
CLIP3-201ENST00000360535 TREX2Q9BQ50 279 aaPredicted RBP11.5□□□□□ -0.57
CLIP3-201ENST00000360535 SLX1AQ9BQ83 275 aa11.5□□□□□ -0.57
CLIP3-201ENST00000360535 C17orf62Q9BQA9 187 aa11.5□□□□□ -0.57
CLIP3-201ENST00000360535 XKR8Q9H6D3 395 aa11.5□□□□□ -0.57
CLIP3-201ENST00000360535 STUB1Q9UNE7 303 aa11.5□□□□□ -0.57
CLIP3-201ENST00000360535 CLCA3PQ9Y6N3 262 aa11.5□□□□□ -0.57
CLIP3-201ENST00000360535 A3GALT2U3KPV4 340 aa11.5□□□□□ -0.57
CLIP3-201ENST00000360535 E9PQ18 207 aa11.5□□□□□ -0.57
CLIP3-201ENST00000360535 GUCY1B2O75343 617 aa11.5□□□□□ -0.57
CLIP3-201ENST00000360535 MYL12AP19105 171 aa11.5□□□□□ -0.57
CLIP3-201ENST00000360535 ATP6V1E1P36543 226 aa11.5□□□□□ -0.57
CLIP3-201ENST00000360535 RPL3P39023 403 aaKnown RBP11.5□□□□□ -0.57
CLIP3-201ENST00000360535 C21orf58P58505 322 aa11.5□□□□□ -0.57
CLIP3-201ENST00000360535 RPS25P62851 125 aaKnown RBP11.5□□□□□ -0.57
CLIP3-201ENST00000360535 ZNF33BQ06732 778 aa11.5□□□□□ -0.57
CLIP3-201ENST00000360535 LASP1Q14847 261 aaKnown RBP11.5□□□□□ -0.57
CLIP3-201ENST00000360535 NLRP8Q86W28 1048 aa11.5□□□□□ -0.57
CLIP3-201ENST00000360535 LAS2Q8IYD9 372 aa11.5□□□□□ -0.57
CLIP3-201ENST00000360535 KRT78Q8N1N4 520 aa11.5□□□□□ -0.57
CLIP3-201ENST00000360535 OR4K5Q8NGD3 323 aa11.5□□□□□ -0.57
CLIP3-201ENST00000360535 GFM1Q96RP9 751 aaKnown RBP11.5□□□□□ -0.57
CLIP3-201ENST00000360535 TMED9Q9BVK6 235 aa11.5□□□□□ -0.57
CLIP3-201ENST00000360535 OR51I1Q9H343 314 aa11.5□□□□□ -0.57
CLIP3-201ENST00000360535 TXNL4BQ9NX01 149 aaKnown RBP11.5□□□□□ -0.57
CLIP3-201ENST00000360535 CNIH4Q9P003 139 aa11.5□□□□□ -0.57
CLIP3-201ENST00000360535 SEC14L4Q9UDX3 406 aa11.5□□□□□ -0.57
CLIP3-201ENST00000360535 ZNF106Q9H2Y7 1883 aaKnown RBP11.49□□□□□ -0.57
CLIP3-201ENST00000360535 SEMA3DO95025 777 aa11.49□□□□□ -0.57
CLIP3-201ENST00000360535 ADAP00813 363 aa11.49□□□□□ -0.57
CLIP3-201ENST00000360535 IRS1P35568 1242 aa11.49□□□□□ -0.57
CLIP3-201ENST00000360535 MMP12P39900 470 aa11.49□□□□□ -0.57
CLIP3-201ENST00000360535 CD79BP40259 229 aa11.49□□□□□ -0.57
CLIP3-201ENST00000360535 LIMS1P48059 325 aa11.49□□□□□ -0.57
CLIP3-201ENST00000360535 LARS2Q15031 903 aaKnown RBP11.49□□□□□ -0.57
CLIP3-201ENST00000360535 SNAP47Q5SQN1 464 aa11.49□□□□□ -0.57
CLIP3-201ENST00000360535 ZNF770Q6IQ21 691 aaPredicted RBP11.49□□□□□ -0.57
CLIP3-201ENST00000360535 ZNF547Q8IVP9 402 aa11.49□□□□□ -0.57
CLIP3-201ENST00000360535 ANKRD53Q8N9V6 530 aa11.49□□□□□ -0.57
CLIP3-201ENST00000360535 FLCNQ8NFG4 579 aa11.49□□□□□ -0.57
CLIP3-201ENST00000360535 NLGN4YQ8NFZ3 816 aaPredicted RBP11.49□□□□□ -0.57
CLIP3-201ENST00000360535 TFGQ92734 400 aaPredicted RBP11.49□□□□□ -0.57
CLIP3-201ENST00000360535 ZNF689Q96CS4 500 aaPredicted RBP11.49□□□□□ -0.57
CLIP3-201ENST00000360535 CXorf40BQ96DE9 158 aa11.49□□□□□ -0.57
CLIP3-201ENST00000360535 PDXPQ96GD0 296 aa11.49□□□□□ -0.57
CLIP3-201ENST00000360535 GPA33Q99795 319 aa11.49□□□□□ -0.57
CLIP3-201ENST00000360535 C19orf43Q9BQ61 176 aa11.49□□□□□ -0.57
CLIP3-201ENST00000360535 HDHD5Q9BXW7 423 aa11.49□□□□□ -0.57
CLIP3-201ENST00000360535 MOV10Q9HCE1 1003 aaKnown RBP11.49□□□□□ -0.57
CLIP3-201ENST00000360535 AHSPQ9NZD4 102 aa11.49□□□□□ -0.57
CLIP3-201ENST00000360535 V9GYH0 126 aa11.49□□□□□ -0.57
CLIP3-201ENST00000360535 FOXE1O00358 373 aaPredicted RBP11.49□□□□□ -0.57
CLIP3-201ENST00000360535 HMGN4O00479 90 aa11.49□□□□□ -0.57
CLIP3-201ENST00000360535 PI15O43692 258 aa11.49□□□□□ -0.57
CLIP3-201ENST00000360535 PCSK2P16519 638 aa11.49□□□□□ -0.57
CLIP3-201ENST00000360535 MMP11P24347 488 aa11.49□□□□□ -0.57
CLIP3-201ENST00000360535 HMGA2P52926 109 aa11.49□□□□□ -0.57
CLIP3-201ENST00000360535 SCN1BQ07699 218 aa11.49□□□□□ -0.57
CLIP3-201ENST00000360535 PDE7AQ13946 482 aa11.49□□□□□ -0.57
CLIP3-201ENST00000360535 VASH1Q7L8A9 365 aaPredicted RBP11.49□□□□□ -0.57
CLIP3-201ENST00000360535 LAPTM4BQ86VI4 370 aa11.49□□□□□ -0.57
CLIP3-201ENST00000360535 SFTPA1Q8IWL2 248 aa11.49□□□□□ -0.57
CLIP3-201ENST00000360535 ATP6V1C2Q8NEY4 427 aa11.49□□□□□ -0.57
CLIP3-201ENST00000360535 OR8J1Q8NGP2 316 aa11.49□□□□□ -0.57
CLIP3-201ENST00000360535 ENKURQ8TC29 256 aa11.49□□□□□ -0.57
CLIP3-201ENST00000360535 SMPDL3AQ92484 453 aa11.49□□□□□ -0.57
CLIP3-201ENST00000360535 TM4SF18Q96CE8 201 aa11.49□□□□□ -0.57
CLIP3-201ENST00000360535 NUS1Q96E22 293 aa11.49□□□□□ -0.57
CLIP3-201ENST00000360535 ZNF607Q96SK3 696 aa11.49□□□□□ -0.57
CLIP3-201ENST00000360535 TAPBPLQ9BX59 468 aa11.49□□□□□ -0.57
CLIP3-201ENST00000360535 C11orf54Q9H0W9 315 aaPredicted RBP11.49□□□□□ -0.57
CLIP3-201ENST00000360535 CREBZFQ9NS37 354 aa11.49□□□□□ -0.57
CLIP3-201ENST00000360535 A0A1B0GVC2 190 aa11.48□□□□□ -0.57
CLIP3-201ENST00000360535 A6NIN4 97 aa11.48□□□□□ -0.57
CLIP3-201ENST00000360535 HIDE1A8MVS5 230 aa11.48□□□□□ -0.57
CLIP3-201ENST00000360535 CASKO14936 926 aa11.48□□□□□ -0.57
CLIP3-201ENST00000360535 TMPRSS11DO60235 418 aa11.48□□□□□ -0.57
CLIP3-201ENST00000360535 APEX1P27695 318 aaKnown RBP11.48□□□□□ -0.57
CLIP3-201ENST00000360535 SOX18P35713 384 aa11.48□□□□□ -0.57
CLIP3-201ENST00000360535 PSPHP78330 225 aa11.48□□□□□ -0.57
CLIP3-201ENST00000360535 FNDC3BQ53EP0 1204 aaKnown RBP11.48□□□□□ -0.57
CLIP3-201ENST00000360535 KIAA1161Q6NSJ0 714 aa11.48□□□□□ -0.57
CLIP3-201ENST00000360535 RRM2BQ7LG56 351 aa11.48□□□□□ -0.57
CLIP3-201ENST00000360535 ZER1Q7Z7L7 766 aa11.48□□□□□ -0.57
CLIP3-201ENST00000360535 PLA2G15Q8NCC3 412 aa11.48□□□□□ -0.57
CLIP3-201ENST00000360535 OR52I1Q8NGK6 324 aa11.48□□□□□ -0.57
CLIP3-201ENST00000360535 OR6T1Q8NGN1 323 aa11.48□□□□□ -0.57
CLIP3-201ENST00000360535 CCDC32Q9BV29 185 aa11.48□□□□□ -0.57
CLIP3-201ENST00000360535 PLA2G12AQ9BZM1 189 aa11.48□□□□□ -0.57
CLIP3-201ENST00000360535 SLC25A19Q9HC21 320 aa11.48□□□□□ -0.57
CLIP3-201ENST00000360535 MGAT4BQ9UQ53 548 aa11.48□□□□□ -0.57
CLIP3-201ENST00000360535 PSKH1P11801 424 aa11.48□□□□□ -0.57
CLIP3-201ENST00000360535 C6P13671 934 aa11.48□□□□□ -0.57
CLIP3-201ENST00000360535 DDCP20711 480 aa11.48□□□□□ -0.57
CLIP3-201ENST00000360535 ILKQ13418 452 aa11.48□□□□□ -0.57
CLIP3-201ENST00000360535 GPR19Q15760 415 aa11.48□□□□□ -0.57
CLIP3-201ENST00000360535 DPPA4Q7L190 304 aa11.48□□□□□ -0.57
CLIP3-201ENST00000360535 CCDC116Q8IYX3 515 aa11.48□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms