RNA–Protein interactions for RNA: ENST00000356352.6

UPF2-201, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF2, Length 5,569 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-201ENST00000356352 HSD17B7P56937 341 aa6.19□□□□□ -1.42
UPF2-201ENST00000356352 HNRNPKP61978 463 aaKnown RBP eCLIP6.19□□□□□ -1.42
UPF2-201ENST00000356352 NKX3-2P78367 333 aa6.19□□□□□ -1.42
UPF2-201ENST00000356352 EVX2Q03828 476 aa6.19□□□□□ -1.42
UPF2-201ENST00000356352 RAB31Q13636 194 aa6.19□□□□□ -1.42
UPF2-201ENST00000356352 ELAVL3Q14576 367 aaKnown RBP6.19□□□□□ -1.42
UPF2-201ENST00000356352 PTPRRQ15256 657 aa6.19□□□□□ -1.42
UPF2-201ENST00000356352 EXOC3L2Q2M3D2 409 aa6.19□□□□□ -1.42
UPF2-201ENST00000356352 SLC35F1Q5T1Q4 408 aa6.19□□□□□ -1.42
UPF2-201ENST00000356352 DPY19L3Q6ZPD9 716 aa6.19□□□□□ -1.42
UPF2-201ENST00000356352 RBM12BQ8IXT5 1001 aaKnown RBP6.19□□□□□ -1.42
UPF2-201ENST00000356352 CCDC116Q8IYX3 515 aa6.19□□□□□ -1.42
UPF2-201ENST00000356352 UMODL1-AS1Q8N2C9 162 aa6.19□□□□□ -1.42
UPF2-201ENST00000356352 PIAS4Q8N2W9 510 aaPredicted RBP6.19□□□□□ -1.42
UPF2-201ENST00000356352 OR14K1Q8NGZ2 314 aa6.19□□□□□ -1.42
UPF2-201ENST00000356352 IMP4Q96G21 291 aaKnown RBP6.19□□□□□ -1.42
UPF2-201ENST00000356352 SLC2A13Q96QE2 648 aa6.19□□□□□ -1.42
UPF2-201ENST00000356352 CCDC32Q9BV29 185 aa6.19□□□□□ -1.42
UPF2-201ENST00000356352 ARHGAP39Q9C0H5 1083 aa6.19□□□□□ -1.42
UPF2-201ENST00000356352 CUEDC1Q9NWM3 386 aaPredicted RBP6.19□□□□□ -1.42
UPF2-201ENST00000356352 BLACEA4D250 179 aa6.18□□□□□ -1.42
UPF2-201ENST00000356352 SCAMP2O15127 329 aaKnown RBP6.18□□□□□ -1.42
UPF2-201ENST00000356352 BRINP1O60477 761 aa6.18□□□□□ -1.42
UPF2-201ENST00000356352 TBX10O75333 385 aa6.18□□□□□ -1.42
UPF2-201ENST00000356352 MRPL3P09001 348 aaKnown RBP6.18□□□□□ -1.42
UPF2-201ENST00000356352 ADRB3P13945 408 aa6.18□□□□□ -1.42
UPF2-201ENST00000356352 ZNF43P17038 809 aa6.18□□□□□ -1.42
UPF2-201ENST00000356352 FASLGP48023 281 aa6.18□□□□□ -1.42
UPF2-201ENST00000356352 SLC6A8P48029 635 aa6.18□□□□□ -1.42
UPF2-201ENST00000356352 PPA1Q15181 289 aa6.18□□□□□ -1.42
UPF2-201ENST00000356352 C6orf136Q5SQH8 315 aa6.18□□□□□ -1.42
UPF2-201ENST00000356352 S100A7AQ86SG5 101 aa6.18□□□□□ -1.42
UPF2-201ENST00000356352 UEVLDQ8IX04 471 aa6.18□□□□□ -1.42
UPF2-201ENST00000356352 SPTSSAQ969W0 71 aa6.18□□□□□ -1.42
UPF2-201ENST00000356352 TMEM74Q96NL1 305 aa6.18□□□□□ -1.42
UPF2-201ENST00000356352 MTG2Q9H4K7 406 aa6.18□□□□□ -1.42
UPF2-201ENST00000356352 IL21RQ9HBE5 538 aa6.18□□□□□ -1.42
UPF2-201ENST00000356352 TMEM45AQ9NWC5 275 aa6.18□□□□□ -1.42
UPF2-201ENST00000356352 C2orf42Q9NWW7 574 aa6.18□□□□□ -1.42
UPF2-201ENST00000356352 A6NIZ1 184 aa6.18□□□□□ -1.42
UPF2-201ENST00000356352 HHLA1C9JL84 531 aa6.18□□□□□ -1.42
UPF2-201ENST00000356352 TMX2-CTNND1H3BSU7 103 aa6.18□□□□□ -1.42
UPF2-201ENST00000356352 AURKAO14965 403 aa6.18□□□□□ -1.42
UPF2-201ENST00000356352 AXIN1O15169 862 aa6.18□□□□□ -1.42
UPF2-201ENST00000356352 HTRA2O43464 458 aaPredicted RBP6.18□□□□□ -1.42
UPF2-201ENST00000356352 LATO43561 262 aa6.18□□□□□ -1.42
UPF2-201ENST00000356352 ACTL6BO94805 426 aa6.18□□□□□ -1.42
UPF2-201ENST00000356352 COL1A1P02452 1464 aaPredicted RBP6.18□□□□□ -1.42
UPF2-201ENST00000356352 RHOP08100 348 aa6.18□□□□□ -1.42
UPF2-201ENST00000356352 HLA-EP13747 358 aa6.18□□□□□ -1.42
UPF2-201ENST00000356352 JUNDP17535 347 aa6.18□□□□□ -1.42
UPF2-201ENST00000356352 CAPN3P20807 821 aa6.18□□□□□ -1.42
UPF2-201ENST00000356352 RPS3P23396 243 aaKnown RBP eCLIP6.18□□□□□ -1.42
UPF2-201ENST00000356352 ADH7P40394 386 aa6.18□□□□□ -1.42
UPF2-201ENST00000356352 ART1P52961 327 aa6.18□□□□□ -1.42
UPF2-201ENST00000356352 RAP1BP61224 184 aa6.18□□□□□ -1.42
UPF2-201ENST00000356352 RAP1AP62834 184 aa6.18□□□□□ -1.42
UPF2-201ENST00000356352 LMAN2Q12907 356 aa6.18□□□□□ -1.42
UPF2-201ENST00000356352 DCAF12L1Q5VU92 463 aa6.18□□□□□ -1.42
UPF2-201ENST00000356352 TMPRSS12Q86WS5 348 aa6.18□□□□□ -1.42
UPF2-201ENST00000356352 CASD1Q96PB1 797 aa6.18□□□□□ -1.42
UPF2-201ENST00000356352 TGM7Q96PF1 710 aa6.18□□□□□ -1.42
UPF2-201ENST00000356352 PHOX2BQ99453 314 aa6.18□□□□□ -1.42
UPF2-201ENST00000356352 VRTNQ9H8Y1 702 aa6.18□□□□□ -1.42
UPF2-201ENST00000356352 CDH20Q9HBT6 801 aa6.18□□□□□ -1.42
UPF2-201ENST00000356352 TAS2R3Q9NYW6 316 aa6.18□□□□□ -1.42
UPF2-201ENST00000356352 RHCGQ9UBD6 479 aa6.18□□□□□ -1.42
UPF2-201ENST00000356352 APOBEC3BQ9UH17 382 aaKnown RBP6.18□□□□□ -1.42
UPF2-201ENST00000356352 FBXL3Q9UKT7 428 aa6.18□□□□□ -1.42
UPF2-201ENST00000356352 STYXL1Q9Y6J8 313 aa6.18□□□□□ -1.42
UPF2-201ENST00000356352 RNF215Q9Y6U7 377 aa6.18□□□□□ -1.42
UPF2-201ENST00000356352 MEGF11A6BM72 1044 aa6.18□□□□□ -1.42
UPF2-201ENST00000356352 C2orf72A6NCS6 295 aa6.18□□□□□ -1.42
UPF2-201ENST00000356352 F5H0A9 414 aaPredicted RBP6.18□□□□□ -1.42
UPF2-201ENST00000356352 CD40LGP29965 261 aa6.18□□□□□ -1.42
UPF2-201ENST00000356352 ETV3P41162 512 aa6.18□□□□□ -1.42
UPF2-201ENST00000356352 MAP2K3P46734 347 aa6.18□□□□□ -1.42
UPF2-201ENST00000356352 GCGRP47871 477 aa6.18□□□□□ -1.42
UPF2-201ENST00000356352 SOX2P48431 317 aa6.18□□□□□ -1.42
UPF2-201ENST00000356352 TAS2R31P59538 309 aa6.18□□□□□ -1.42
UPF2-201ENST00000356352 TBPL1P62380 186 aa6.18□□□□□ -1.42
UPF2-201ENST00000356352 OGDHQ02218 1023 aa6.18□□□□□ -1.42
UPF2-201ENST00000356352 ID2Q02363 134 aa6.18□□□□□ -1.42
UPF2-201ENST00000356352 UPP1Q16831 310 aa6.18□□□□□ -1.42
UPF2-201ENST00000356352 CTC1Q2NKJ3 1217 aa6.18□□□□□ -1.42
UPF2-201ENST00000356352 RAB41Q5JT25 222 aa6.18□□□□□ -1.42
UPF2-201ENST00000356352 ATAD3CQ5T2N8 411 aa6.18□□□□□ -1.42
UPF2-201ENST00000356352 CES4AQ5XG92 561 aa6.18□□□□□ -1.42
UPF2-201ENST00000356352 CARD17Q5XLA6 110 aa6.18□□□□□ -1.42
UPF2-201ENST00000356352 FAM205BPQ63HN1 556 aa6.18□□□□□ -1.42
UPF2-201ENST00000356352 NANOGP8Q6NSW7 305 aa6.18□□□□□ -1.42
UPF2-201ENST00000356352 TMEM53Q6P2H8 277 aa6.18□□□□□ -1.42
UPF2-201ENST00000356352 CLDN19Q8N6F1 224 aa6.18□□□□□ -1.42
UPF2-201ENST00000356352 ASB15Q8WXK1 588 aa6.18□□□□□ -1.42
UPF2-201ENST00000356352 RAB8BQ92930 207 aa6.18□□□□□ -1.42
UPF2-201ENST00000356352 RRNAD1Q96FB5 475 aaKnown RBP6.18□□□□□ -1.42
UPF2-201ENST00000356352 TWNKQ96RR1 684 aa6.18□□□□□ -1.42
UPF2-201ENST00000356352 BCL7BQ9BQE9 202 aa6.18□□□□□ -1.42
UPF2-201ENST00000356352 SLC6A16Q9GZN6 736 aa6.18□□□□□ -1.42
UPF2-201ENST00000356352 EIF5A2Q9GZV4 153 aaKnown RBP6.18□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms