RNA–Protein interactions for RNA: ENST00000313860.11

LIMCH1-201, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMCH1, Length 6,165 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-201ENST00000313860 DPF2Q92785 391 aa7.33□□□□□ -1.24
LIMCH1-201ENST00000313860 PPCDCQ96CD2 204 aa7.33□□□□□ -1.24
LIMCH1-201ENST00000313860 TIMP4Q99727 224 aa7.33□□□□□ -1.24
LIMCH1-201ENST00000313860 FAAP24Q9BTP7 215 aa7.33□□□□□ -1.24
LIMCH1-201ENST00000313860 PDE7BQ9NP56 450 aa7.33□□□□□ -1.24
LIMCH1-201ENST00000313860 NYAP2Q9P242 653 aa7.33□□□□□ -1.24
LIMCH1-201ENST00000313860 OR5V1Q9UGF6 321 aa7.33□□□□□ -1.24
LIMCH1-201ENST00000313860 BOKQ9UMX3 212 aaPredicted RBP7.33□□□□□ -1.24
LIMCH1-201ENST00000313860 A8MUA0 341 aa7.33□□□□□ -1.24
LIMCH1-201ENST00000313860 SURF4O15260 269 aa7.33□□□□□ -1.24
LIMCH1-201ENST00000313860 SHMT2P34897 504 aa7.33□□□□□ -1.24
LIMCH1-201ENST00000313860 PRPS1P60891 318 aa7.33□□□□□ -1.24
LIMCH1-201ENST00000313860 RBP5P82980 135 aa7.33□□□□□ -1.24
LIMCH1-201ENST00000313860 TMEM35AQ53FP2 167 aa7.33□□□□□ -1.24
LIMCH1-201ENST00000313860 EPHA10Q5JZY3 1008 aa7.33□□□□□ -1.24
LIMCH1-201ENST00000313860 CDCA2Q69YH5 1023 aaPredicted RBP7.33□□□□□ -1.24
LIMCH1-201ENST00000313860 ADAM5Q6NVV9 412 aa7.33□□□□□ -1.24
LIMCH1-201ENST00000313860 SLC15A3Q8IY34 581 aa7.33□□□□□ -1.24
LIMCH1-201ENST00000313860 CMTM4Q8IZR5 234 aa7.33□□□□□ -1.24
LIMCH1-201ENST00000313860 TMEM151AQ8N4L1 468 aa7.33□□□□□ -1.24
LIMCH1-201ENST00000313860 HCAR2Q8TDS4 363 aa7.33□□□□□ -1.24
LIMCH1-201ENST00000313860 TOE1Q96GM8 510 aaKnown RBP7.33□□□□□ -1.24
LIMCH1-201ENST00000313860 KCNA7Q96RP8 456 aa7.33□□□□□ -1.24
LIMCH1-201ENST00000313860 EFCAB11Q9BUY7 163 aa7.33□□□□□ -1.24
LIMCH1-201ENST00000313860 C2orf49Q9BVC5 232 aaPredicted RBP7.33□□□□□ -1.24
LIMCH1-201ENST00000313860 TINAGL1Q9GZM7 467 aaPredicted RBP7.33□□□□□ -1.24
LIMCH1-201ENST00000313860 EMC7Q9NPA0 242 aa7.33□□□□□ -1.24
LIMCH1-201ENST00000313860 PCDHB14Q9Y5E9 798 aa7.33□□□□□ -1.24
LIMCH1-201ENST00000313860 A0A1W2PPL8 197 aa7.33□□□□□ -1.24
LIMCH1-201ENST00000313860 H3BQF6 201 aa7.33□□□□□ -1.24
LIMCH1-201ENST00000313860 PRAMEF2O60811 474 aa7.33□□□□□ -1.24
LIMCH1-201ENST00000313860 NXPH3O95157 252 aa7.33□□□□□ -1.24
LIMCH1-201ENST00000313860 RASAL1O95294 804 aa7.33□□□□□ -1.24
LIMCH1-201ENST00000313860 SLC2A3P11169 496 aa7.33□□□□□ -1.24
LIMCH1-201ENST00000313860 IRF2P14316 349 aa7.33□□□□□ -1.24
LIMCH1-201ENST00000313860 HOXD12P35452 270 aa7.33□□□□□ -1.24
LIMCH1-201ENST00000313860 GABRA4P48169 554 aa7.33□□□□□ -1.24
LIMCH1-201ENST00000313860 KCNC1P48547 511 aa7.33□□□□□ -1.24
LIMCH1-201ENST00000313860 RAB9AP51151 201 aa7.33□□□□□ -1.24
LIMCH1-201ENST00000313860 FMR1Q06787 632 aaKnown RBP eCLIP7.33□□□□□ -1.24
LIMCH1-201ENST00000313860 SRSF9Q13242 221 aaKnown RBP eCLIP7.33□□□□□ -1.24
LIMCH1-201ENST00000313860 STILQ15468 1287 aa7.33□□□□□ -1.24
LIMCH1-201ENST00000313860 FAM205BPQ63HN1 556 aa7.33□□□□□ -1.24
LIMCH1-201ENST00000313860 HJURPQ8NCD3 748 aaPredicted RBP7.33□□□□□ -1.24
LIMCH1-201ENST00000313860 OR2AE1Q8NHA4 323 aa7.33□□□□□ -1.24
LIMCH1-201ENST00000313860 FIBINQ8TAL6 211 aa7.33□□□□□ -1.24
LIMCH1-201ENST00000313860 DCPSQ96C86 337 aaKnown RBP7.33□□□□□ -1.24
LIMCH1-201ENST00000313860 KCTD15Q96SI1 283 aaPredicted RBP7.33□□□□□ -1.24
LIMCH1-201ENST00000313860 ZNF768Q9H5H4 540 aaKnown RBP7.33□□□□□ -1.24
LIMCH1-201ENST00000313860 SLA2Q9H6Q3 261 aa7.33□□□□□ -1.24
LIMCH1-201ENST00000313860 CCM2LQ9NUG4 571 aaPredicted RBP7.33□□□□□ -1.24
LIMCH1-201ENST00000313860 PCDHA9Q9Y5H5 950 aa7.33□□□□□ -1.24
LIMCH1-201ENST00000313860 TOPBP1Q92547 1522 aa7.33□□□□□ -1.24
LIMCH1-201ENST00000313860 MED14O60244 1454 aa7.33□□□□□ -1.24
LIMCH1-201ENST00000313860 F6UZH7 168 aa7.33□□□□□ -1.24
LIMCH1-201ENST00000313860 MAP2K7O14733 419 aa7.33□□□□□ -1.24
LIMCH1-201ENST00000313860 MSTNO14793 375 aa7.33□□□□□ -1.24
LIMCH1-201ENST00000313860 RECQL4O94761 1208 aa7.33□□□□□ -1.24
LIMCH1-201ENST00000313860 SOX30O94993 753 aa7.33□□□□□ -1.24
LIMCH1-201ENST00000313860 RAP2AP10114 183 aa7.33□□□□□ -1.24
LIMCH1-201ENST00000313860 TXNP10599 105 aaKnown RBP7.33□□□□□ -1.24
LIMCH1-201ENST00000313860 SFTPCP11686 197 aa7.33□□□□□ -1.24
LIMCH1-201ENST00000313860 CDKN1CP49918 316 aaPredicted RBP7.33□□□□□ -1.24
LIMCH1-201ENST00000313860 KCNAB1Q14722 419 aa7.33□□□□□ -1.24
LIMCH1-201ENST00000313860 POM121L1PQ3SYA9 428 aa7.33□□□□□ -1.24
LIMCH1-201ENST00000313860 PXDC1Q5TGL8 231 aa7.33□□□□□ -1.24
LIMCH1-201ENST00000313860 JMJD6Q6NYC1 403 aaPredicted RBP7.33□□□□□ -1.24
LIMCH1-201ENST00000313860 STEAP1BQ6NZ63 245 aa7.33□□□□□ -1.24
LIMCH1-201ENST00000313860 BRAT1Q6PJG6 821 aa7.33□□□□□ -1.24
LIMCH1-201ENST00000313860 KCTD20Q7Z5Y7 419 aa7.33□□□□□ -1.24
LIMCH1-201ENST00000313860 ZNF595Q8IYB9 648 aa7.33□□□□□ -1.24
LIMCH1-201ENST00000313860 PTGR2Q8N8N7 351 aaPredicted RBP7.33□□□□□ -1.24
LIMCH1-201ENST00000313860 OR4F6Q8NGB9 312 aa7.33□□□□□ -1.24
LIMCH1-201ENST00000313860 ELP5Q8TE02 316 aa7.33□□□□□ -1.24
LIMCH1-201ENST00000313860 C15orf40Q8WUR7 153 aa7.33□□□□□ -1.24
LIMCH1-201ENST00000313860 SLC13A3Q8WWT9 602 aa7.33□□□□□ -1.24
LIMCH1-201ENST00000313860 MAP3K3Q99759 626 aa7.33□□□□□ -1.24
LIMCH1-201ENST00000313860 FUCA2Q9BTY2 467 aa7.33□□□□□ -1.24
LIMCH1-201ENST00000313860 L2HGDHQ9H9P8 463 aa7.33□□□□□ -1.24
LIMCH1-201ENST00000313860 UCK1Q9HA47 277 aa7.33□□□□□ -1.24
LIMCH1-201ENST00000313860 RHOFQ9HBH0 211 aa7.33□□□□□ -1.24
LIMCH1-201ENST00000313860 MED16Q9Y2X0 877 aa7.33□□□□□ -1.24
LIMCH1-201ENST00000313860 RAP2CQ9Y3L5 183 aa7.33□□□□□ -1.24
LIMCH1-201ENST00000313860 ADGRL1O94910 1474 aa7.33□□□□□ -1.24
LIMCH1-201ENST00000313860 SLC12A8A0AV02 714 aa7.33□□□□□ -1.24
LIMCH1-201ENST00000313860 CD300LBA8K4G0 201 aa7.33□□□□□ -1.24
LIMCH1-201ENST00000313860 FGBP02675 491 aa7.33□□□□□ -1.24
LIMCH1-201ENST00000313860 TPT1P13693 172 aaKnown RBP7.33□□□□□ -1.24
LIMCH1-201ENST00000313860 CRHBPP24387 322 aa7.33□□□□□ -1.24
LIMCH1-201ENST00000313860 NFYBP25208 207 aa7.33□□□□□ -1.24
LIMCH1-201ENST00000313860 SOX2P48431 317 aa7.33□□□□□ -1.24
LIMCH1-201ENST00000313860 KCNQ1P51787 676 aa7.33□□□□□ -1.24
LIMCH1-201ENST00000313860 RAET1GQ6H3X3 334 aa7.33□□□□□ -1.24
LIMCH1-201ENST00000313860 NOXRED1Q6NXP6 359 aa7.33□□□□□ -1.24
LIMCH1-201ENST00000313860 ZNF585AQ6P3V2 769 aa7.33□□□□□ -1.24
LIMCH1-201ENST00000313860 ASRGL1Q7L266 308 aa7.33□□□□□ -1.24
LIMCH1-201ENST00000313860 ENTHD1Q8IYW4 607 aa7.33□□□□□ -1.24
LIMCH1-201ENST00000313860 GSTCDQ8NEC7 633 aa7.33□□□□□ -1.24
LIMCH1-201ENST00000313860 OR4K1Q8NGD4 311 aa7.33□□□□□ -1.24
LIMCH1-201ENST00000313860 ZNF519Q8TB69 540 aa7.33□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 59.4 ms