RNA–Protein interactions for RNA: ENST00000638725.1

SNIP1-204, Transcript of Smad nuclear interacting protein 1, humanhuman

TSL 2

Gene SNIP1, Length 2,761 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNIP1-204ENST00000638725 AP5Z1O43299 807 aa13.09□□□□□ -0.31
SNIP1-204ENST00000638725 DDX54Q8TDD1 881 aaKnown RBP13.09□□□□□ -0.31
SNIP1-204ENST00000638725 JAKMIP1Q96N16 626 aaKnown RBP13.09□□□□□ -0.31
SNIP1-204ENST00000638725 MTMR6Q9Y217 621 aa13.09□□□□□ -0.31
SNIP1-204ENST00000638725 ATP6V1DQ9Y5K8 247 aa13.09□□□□□ -0.31
SNIP1-204ENST00000638725 PRPF40BQ6NWY9 871 aaKnown RBP13.08□□□□□ -0.32
SNIP1-204ENST00000638725 DIAPH3Q9NSV4 1193 aa13.08□□□□□ -0.32
SNIP1-204ENST00000638725 PLEKHG1Q9ULL1 1385 aa13.08□□□□□ -0.32
SNIP1-204ENST00000638725 ANXA1P04083 346 aa13.08□□□□□ -0.32
SNIP1-204ENST00000638725 ST3GAL1Q11201 340 aa13.08□□□□□ -0.32
SNIP1-204ENST00000638725 OS9Q13438 667 aaPredicted RBP13.08□□□□□ -0.32
SNIP1-204ENST00000638725 BEND3Q5T5X7 828 aa13.08□□□□□ -0.32
SNIP1-204ENST00000638725 PDRG1Q9NUG6 133 aa13.08□□□□□ -0.32
SNIP1-204ENST00000638725 CHPF2Q9P2E5 772 aa13.08□□□□□ -0.32
SNIP1-204ENST00000638725 RGPD8O14715 1765 aaPredicted RBP13.08□□□□□ -0.32
SNIP1-204ENST00000638725 PI4KAP2A4QPH2 592 aa13.07□□□□□ -0.32
SNIP1-204ENST00000638725 VPS37CA5D8V6 355 aaPredicted RBP13.07□□□□□ -0.32
SNIP1-204ENST00000638725 PI4KAP1Q8N8J0 262 aa13.07□□□□□ -0.32
SNIP1-204ENST00000638725 DNAAF4Q8WXU2 420 aa13.07□□□□□ -0.32
SNIP1-204ENST00000638725 PRIMPOLQ96LW4 560 aa13.07□□□□□ -0.32
SNIP1-204ENST00000638725 BABAM1Q9NWV8 329 aa13.07□□□□□ -0.32
SNIP1-204ENST00000638725 AMOTL2Q9Y2J4 779 aa13.07□□□□□ -0.32
SNIP1-204ENST00000638725 CRYBG1Q9Y4K1 1723 aa13.07□□□□□ -0.32
SNIP1-204ENST00000638725 GLRX3O76003 335 aaKnown RBP13.07□□□□□ -0.32
SNIP1-204ENST00000638725 USP42Q9H9J4 1324 aaKnown RBP13.06□□□□□ -0.32
SNIP1-204ENST00000638725 FAM177BA6PVY3 158 aa13.06□□□□□ -0.32
SNIP1-204ENST00000638725 VPS53Q5VIR6 699 aa13.06□□□□□ -0.32
SNIP1-204ENST00000638725 ZNF710Q8N1W2 664 aa13.06□□□□□ -0.32
SNIP1-204ENST00000638725 NECAB1Q8N987 351 aa13.06□□□□□ -0.32
SNIP1-204ENST00000638725 SPTLC3Q9NUV7 552 aa13.06□□□□□ -0.32
SNIP1-204ENST00000638725 TTC41PQ6P2S7 1318 aa13.06□□□□□ -0.32
SNIP1-204ENST00000638725 EIF4A1P60842 406 aaKnown RBP13.05□□□□□ -0.32
SNIP1-204ENST00000638725 ME3Q16798 604 aa13.05□□□□□ -0.32
SNIP1-204ENST00000638725 HSP90AB4PQ58FF6 505 aa13.05□□□□□ -0.32
SNIP1-204ENST00000638725 RUFY2Q8WXA3 655 aa13.05□□□□□ -0.32
SNIP1-204ENST00000638725 KCNF1Q9H3M0 494 aa13.05□□□□□ -0.32
SNIP1-204ENST00000638725 CYP46A1Q9Y6A2 500 aa13.05□□□□□ -0.32
SNIP1-204ENST00000638725 KCNQ3O43525 872 aa13.05□□□□□ -0.32
SNIP1-204ENST00000638725 HMGN5P82970 282 aaKnown RBP13.05□□□□□ -0.32
SNIP1-204ENST00000638725 SPC24Q8NBT2 197 aa13.05□□□□□ -0.32
SNIP1-204ENST00000638725 ZSWIM6Q9HCJ5 1215 aa13.05□□□□□ -0.32
SNIP1-204ENST00000638725 DIP2AQ14689 1571 aa13.04□□□□□ -0.32
SNIP1-204ENST00000638725 CLASRPQ8N2M8 674 aaKnown RBP13.04□□□□□ -0.32
SNIP1-204ENST00000638725 LGR6Q9HBX8 967 aa13.04□□□□□ -0.32
SNIP1-204ENST00000638725 PYCARDQ9ULZ3 195 aa13.04□□□□□ -0.32
SNIP1-204ENST00000638725 PA2G4Q9UQ80 394 aaKnown RBP13.04□□□□□ -0.32
SNIP1-204ENST00000638725 GTF2F1P35269 517 aaKnown RBP eCLIP13.04□□□□□ -0.32
SNIP1-204ENST00000638725 COL9A3Q14050 684 aaPredicted RBP13.04□□□□□ -0.32
SNIP1-204ENST00000638725 ZSCAN31Q96LW9 406 aaPredicted RBP13.04□□□□□ -0.32
SNIP1-204ENST00000638725 SH2B1Q9NRF2 756 aaPredicted RBP13.04□□□□□ -0.32
SNIP1-204ENST00000638725 PRDM4Q9UKN5 801 aa13.04□□□□□ -0.32
SNIP1-204ENST00000638725 CHMP3Q9Y3E7 222 aa13.04□□□□□ -0.32
SNIP1-204ENST00000638725 CCDC94Q9BW85 323 aaPredicted RBP13.03□□□□□ -0.32
SNIP1-204ENST00000638725 ECHDC1Q9NTX5 307 aa13.03□□□□□ -0.32
SNIP1-204ENST00000638725 ADCY9O60503 1353 aa13.03□□□□□ -0.32
SNIP1-204ENST00000638725 CEMIPQ8WUJ3 1361 aa13.03□□□□□ -0.32
SNIP1-204ENST00000638725 NECTIN1Q15223 517 aa13.03□□□□□ -0.32
SNIP1-204ENST00000638725 FAM173BQ6P4H8 233 aa13.03□□□□□ -0.32
SNIP1-204ENST00000638725 TTC6Q86TZ1 520 aa13.03□□□□□ -0.32
SNIP1-204ENST00000638725 FERMT3Q86UX7 667 aa13.03□□□□□ -0.32
SNIP1-204ENST00000638725 KIAA1524Q8TCG1 905 aa13.03□□□□□ -0.32
SNIP1-204ENST00000638725 TM6SF1Q9BZW5 370 aa13.03□□□□□ -0.32
SNIP1-204ENST00000638725 PRDM10Q9NQV6 1147 aa13.03□□□□□ -0.32
SNIP1-204ENST00000638725 TPCN1Q9ULQ1 816 aa13.03□□□□□ -0.32
SNIP1-204ENST00000638725 KCNB2Q92953 911 aa13.03□□□□□ -0.32
SNIP1-204ENST00000638725 RBM8AQ9Y5S9 174 aaKnown RBP13.03□□□□□ -0.32
SNIP1-204ENST00000638725 CCDC171Q6TFL3 1326 aa13.02□□□□□ -0.32
SNIP1-204ENST00000638725 CCDC192P0DO97 292 aa13.02□□□□□ -0.32
SNIP1-204ENST00000638725 CDC37L1Q7L3B6 337 aa13.02□□□□□ -0.32
SNIP1-204ENST00000638725 SMAP1Q8IYB5 467 aaPredicted RBP13.02□□□□□ -0.32
SNIP1-204ENST00000638725 MARF1Q9Y4F3 1742 aaKnown RBP13.02□□□□□ -0.33
SNIP1-204ENST00000638725 IFIT2P09913 472 aaKnown RBP13.02□□□□□ -0.33
SNIP1-204ENST00000638725 LARP1BQ659C4 914 aaKnown RBP13.02□□□□□ -0.33
SNIP1-204ENST00000638725 ABTB2Q8N961 1025 aa13.02□□□□□ -0.33
SNIP1-204ENST00000638725 FAM227BQ96M60 508 aa13.02□□□□□ -0.33
SNIP1-204ENST00000638725 KIF3AQ9Y496 699 aa13.02□□□□□ -0.33
SNIP1-204ENST00000638725 LIG1P18858 919 aa13.01□□□□□ -0.33
SNIP1-204ENST00000638725 KCNJ4P48050 445 aa13.01□□□□□ -0.33
SNIP1-204ENST00000638725 MTX1Q13505 466 aa13.01□□□□□ -0.33
SNIP1-204ENST00000638725 CAMK4Q16566 473 aa13.01□□□□□ -0.33
SNIP1-204ENST00000638725 CREB3L3Q68CJ9 461 aa13.01□□□□□ -0.33
SNIP1-204ENST00000638725 TCEANC2Q96MN5 208 aa13.01□□□□□ -0.33
SNIP1-204ENST00000638725 ZKSCAN1P17029 563 aaPredicted RBP13.01□□□□□ -0.33
SNIP1-204ENST00000638725 C14orf37Q86TY3 774 aa13.01□□□□□ -0.33
SNIP1-204ENST00000638725 AACSQ86V21 672 aa13.01□□□□□ -0.33
SNIP1-204ENST00000638725 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP13.01□□□□□ -0.33
SNIP1-204ENST00000638725 KRT85P78386 507 aa13□□□□□ -0.33
SNIP1-204ENST00000638725 EVI5LQ96CN4 794 aa13□□□□□ -0.33
SNIP1-204ENST00000638725 GPATCH3Q96I76 525 aa13□□□□□ -0.33
SNIP1-204ENST00000638725 BCL2L12Q9HB09 334 aa13□□□□□ -0.33
SNIP1-204ENST00000638725 HOXB7P09629 217 aa13□□□□□ -0.33
SNIP1-204ENST00000638725 NMIQ13287 307 aaPredicted RBP13□□□□□ -0.33
SNIP1-204ENST00000638725 FAM200AQ8TCP9 573 aa13□□□□□ -0.33
SNIP1-204ENST00000638725 NUP62CLQ9H1M0 184 aa13□□□□□ -0.33
SNIP1-204ENST00000638725 C9orf78Q9NZ63 289 aaPredicted RBP13□□□□□ -0.33
SNIP1-204ENST00000638725 MRVI1Q9Y6F6 885 aa13□□□□□ -0.33
SNIP1-204ENST00000638725 MED1Q15648 1581 aaPredicted RBP13□□□□□ -0.33
SNIP1-204ENST00000638725 CEBPAP49715 358 aaPredicted RBP12.99□□□□□ -0.33
SNIP1-204ENST00000638725 MAP3K11Q16584 847 aa12.99□□□□□ -0.33
SNIP1-204ENST00000638725 CWF19L2Q2TBE0 894 aaKnown RBP12.99□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 52.1 ms