RNA–Protein interactions for RNA: ENST00000637107.1

CLN3-256, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,946 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-256ENST00000637107 ARHGEF1Q92888 912 aaKnown RBP21.89■■□□□ 1.09
CLN3-256ENST00000637107 TRAPPC3LQ5T215 181 aa21.88■■□□□ 1.09
CLN3-256ENST00000637107 DZIP1LQ8IYY4 767 aaKnown RBP21.88■■□□□ 1.09
CLN3-256ENST00000637107 CHPF2Q9P2E5 772 aa21.88■■□□□ 1.09
CLN3-256ENST00000637107 IL6STP40189 918 aaPredicted RBP21.88■■□□□ 1.09
CLN3-256ENST00000637107 COL15A1P39059 1388 aa21.88■■□□□ 1.09
CLN3-256ENST00000637107 MVPQ14764 893 aaKnown RBP21.87■■□□□ 1.09
CLN3-256ENST00000637107 C4AP0C0L4 1744 aa21.86■■□□□ 1.09
CLN3-256ENST00000637107 LRP10Q7Z4F1 713 aa21.86■■□□□ 1.09
CLN3-256ENST00000637107 CASZ1Q86V15 1759 aa21.85■■□□□ 1.09
CLN3-256ENST00000637107 ADRA2BP18089 450 aa21.85■■□□□ 1.09
CLN3-256ENST00000637107 ALDH1L2Q3SY69 923 aa21.85■■□□□ 1.09
CLN3-256ENST00000637107 FTSJ3Q8IY81 847 aaKnown RBP21.85■■□□□ 1.09
CLN3-256ENST00000637107 FLAD1Q8NFF5 587 aa21.85■■□□□ 1.09
CLN3-256ENST00000637107 ERBB4Q15303 1308 aa21.85■■□□□ 1.09
CLN3-256ENST00000637107 RFC4P35249 363 aa21.84■■□□□ 1.09
CLN3-256ENST00000637107 CCDC30Q5VVM6 783 aa21.84■■□□□ 1.09
CLN3-256ENST00000637107 ARXQ96QS3 562 aa21.84■■□□□ 1.09
CLN3-256ENST00000637107 DDX21Q9NR30 783 aaKnown RBP eCLIP21.84■■□□□ 1.09
CLN3-256ENST00000637107 DBF4Q9UBU7 674 aaPredicted RBP21.84■■□□□ 1.09
CLN3-256ENST00000637107 NOB1Q9ULX3 412 aaKnown RBP21.84■■□□□ 1.09
CLN3-256ENST00000637107 PCDHB15Q9Y5E8 787 aa21.84■■□□□ 1.09
CLN3-256ENST00000637107 TRIM27P14373 513 aa21.84■■□□□ 1.09
CLN3-256ENST00000637107 SRP68Q9UHB9 627 aaKnown RBP21.84■■□□□ 1.09
CLN3-256ENST00000637107 TBC1D2BQ9UPU7 963 aa21.84■■□□□ 1.09
CLN3-256ENST00000637107 ATF7IPQ6VMQ6 1270 aa21.83■■□□□ 1.09
CLN3-256ENST00000637107 ERICH6Q7L0X2 663 aa21.82■■□□□ 1.08
CLN3-256ENST00000637107 NPM2Q86SE8 214 aaKnown RBP21.82■■□□□ 1.08
CLN3-256ENST00000637107 ZNF428Q96B54 188 aa21.82■■□□□ 1.08
CLN3-256ENST00000637107 IPO9Q96P70 1041 aaKnown RBP21.82■■□□□ 1.08
CLN3-256ENST00000637107 RGS3P49796 1198 aa21.82■■□□□ 1.08
CLN3-256ENST00000637107 KIF16BQ96L93 1317 aa21.82■■□□□ 1.08
CLN3-256ENST00000637107 ZBTB7AO95365 584 aa21.81■■□□□ 1.08
CLN3-256ENST00000637107 TTLL7Q6ZT98 887 aa21.81■■□□□ 1.08
CLN3-256ENST00000637107 DZIP3Q86Y13 1208 aaKnown RBP21.81■■□□□ 1.08
CLN3-256ENST00000637107 PHAXQ9H814 394 aaKnown RBP21.8■■□□□ 1.08
CLN3-256ENST00000637107 USP42Q9H9J4 1324 aaKnown RBP21.8■■□□□ 1.08
CLN3-256ENST00000637107 IPO8O15397 1037 aaKnown RBP21.8■■□□□ 1.08
CLN3-256ENST00000637107 AIMP1Q12904 312 aaKnown RBP21.8■■□□□ 1.08
CLN3-256ENST00000637107 USPL1Q5W0Q7 1092 aa21.8■■□□□ 1.08
CLN3-256ENST00000637107 NARFQ9UHQ1 456 aa21.8■■□□□ 1.08
CLN3-256ENST00000637107 A0A087WZG4 1122 aa21.79■■□□□ 1.08
CLN3-256ENST00000637107 ZPR1O75312 459 aa21.79■■□□□ 1.08
CLN3-256ENST00000637107 SLC4A2P04920 1241 aa21.79■■□□□ 1.08
CLN3-256ENST00000637107 BRPF1P55201 1214 aaPredicted RBP21.79■■□□□ 1.08
CLN3-256ENST00000637107 MSL1Q68DK7 614 aa21.79■■□□□ 1.08
CLN3-256ENST00000637107 COPS6Q7L5N1 327 aa21.79■■□□□ 1.08
CLN3-256ENST00000637107 XAGE3Q8WTP9 111 aa21.79■■□□□ 1.08
CLN3-256ENST00000637107 STK31Q9BXU1 1019 aa21.79■■□□□ 1.08
CLN3-256ENST00000637107 GYS1P13807 737 aa21.78■■□□□ 1.08
CLN3-256ENST00000637107 FAM161AQ3B820 660 aa21.78■■□□□ 1.08
CLN3-256ENST00000637107 CHMP4AQ9BY43 222 aa21.78■■□□□ 1.08
CLN3-256ENST00000637107 HYPKQ9NX55 129 aa21.78■■□□□ 1.08
CLN3-256ENST00000637107 NOP58Q9Y2X3 529 aaKnown RBP21.78■■□□□ 1.08
CLN3-256ENST00000637107 RWDD1Q9H446 243 aaPredicted RBP21.78■■□□□ 1.08
CLN3-256ENST00000637107 BCL2L12Q9HB09 334 aa21.78■■□□□ 1.08
CLN3-256ENST00000637107 CAMTA2O94983 1202 aa21.77■■□□□ 1.08
CLN3-256ENST00000637107 SLC16A10Q8TF71 515 aa21.77■■□□□ 1.08
CLN3-256ENST00000637107 DDX19BQ9UMR2 479 aa21.77■■□□□ 1.08
CLN3-256ENST00000637107 ATF5Q9Y2D1 282 aaPredicted RBP21.77■■□□□ 1.08
CLN3-256ENST00000637107 G2E3Q7L622 706 aa21.76■■□□□ 1.07
CLN3-256ENST00000637107 C8orf34Q49A92 452 aa21.76■■□□□ 1.07
CLN3-256ENST00000637107 ITPRIPQ8IWB1 547 aa21.76■■□□□ 1.07
CLN3-256ENST00000637107 MRPL50Q8N5N7 158 aaKnown RBP21.76■■□□□ 1.07
CLN3-256ENST00000637107 MTFR1LQ9H019 292 aa21.76■■□□□ 1.07
CLN3-256ENST00000637107 ZBTB3Q9H5J0 574 aa21.76■■□□□ 1.07
CLN3-256ENST00000637107 BCORQ6W2J9 1755 aa21.75■■□□□ 1.07
CLN3-256ENST00000637107 HLFQ16534 295 aa21.75■■□□□ 1.07
CLN3-256ENST00000637107 TMEM57Q8N5G2 664 aa21.75■■□□□ 1.07
CLN3-256ENST00000637107 SCN7AQ01118 1682 aa21.75■■□□□ 1.07
CLN3-256ENST00000637107 CACNA1FO60840 1977 aa21.75■■□□□ 1.07
CLN3-256ENST00000637107 KIF6Q6ZMV9 814 aa21.74■■□□□ 1.07
CLN3-256ENST00000637107 MAP3K15Q6ZN16 1313 aa21.74■■□□□ 1.07
CLN3-256ENST00000637107 NUP98P52948 1817 aa21.72■■□□□ 1.07
CLN3-256ENST00000637107 ERVV-1B6SEH8 477 aa21.71■■□□□ 1.07
CLN3-256ENST00000637107 FLIIQ13045 1269 aa21.71■■□□□ 1.07
CLN3-256ENST00000637107 ANKRD13DQ6ZTN6 518 aa21.71■■□□□ 1.07
CLN3-256ENST00000637107 NLGN1Q8N2Q7 840 aa21.71■■□□□ 1.07
CLN3-256ENST00000637107 ARHGAP45Q92619 1136 aa21.71■■□□□ 1.07
CLN3-256ENST00000637107 ZBTB47Q9UFB7 747 aaPredicted RBP21.71■■□□□ 1.07
CLN3-256ENST00000637107 TBC1D9BQ66K14 1250 aa21.7■■□□□ 1.07
CLN3-256ENST00000637107 PDZRN3Q9UPQ7 1066 aa21.7■■□□□ 1.07
CLN3-256ENST00000637107 BICDL1Q6ZP65 573 aa21.7■■□□□ 1.06
CLN3-256ENST00000637107 PLBD2Q8NHP8 589 aa21.7■■□□□ 1.06
CLN3-256ENST00000637107 COL24A1Q17RW2 1714 aa21.69■■□□□ 1.06
CLN3-256ENST00000637107 PTGER2P43116 358 aa21.69■■□□□ 1.06
CLN3-256ENST00000637107 CLEC4GQ6UXB4 293 aa21.69■■□□□ 1.06
CLN3-256ENST00000637107 SGIP1Q9BQI5 828 aa21.69■■□□□ 1.06
CLN3-256ENST00000637107 SPON1Q9HCB6 807 aa21.69■■□□□ 1.06
CLN3-256ENST00000637107 ZBTB40Q9NUA8 1239 aa21.69■■□□□ 1.06
CLN3-256ENST00000637107 MMP10P09238 476 aa21.68■■□□□ 1.06
CLN3-256ENST00000637107 NFIXQ14938 502 aa21.68■■□□□ 1.06
CLN3-256ENST00000637107 GIGYF2Q6Y7W6 1299 aaKnown RBP21.68■■□□□ 1.06
CLN3-256ENST00000637107 TM4SF1P30408 202 aa21.68■■□□□ 1.06
CLN3-256ENST00000637107 FKBP5Q13451 457 aaPredicted RBP21.68■■□□□ 1.06
CLN3-256ENST00000637107 HDAC1Q13547 482 aaPredicted RBP21.68■■□□□ 1.06
CLN3-256ENST00000637107 RIC3Q7Z5B4 369 aa21.68■■□□□ 1.06
CLN3-256ENST00000637107 ZNF652Q9Y2D9 606 aa21.68■■□□□ 1.06
CLN3-256ENST00000637107 PI4KAP2A4QPH2 592 aa21.67■■□□□ 1.06
CLN3-256ENST00000637107 PI4KAP1Q8N8J0 262 aa21.67■■□□□ 1.06
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms