RNA–Protein interactions for RNA: ENST00000635973.1

CLN3-243, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,084 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-243ENST00000635973 BABAM1Q9NWV8 329 aa23.58■■□□□ 1.37
CLN3-243ENST00000635973 RNF181Q9P0P0 153 aa23.58■■□□□ 1.37
CLN3-243ENST00000635973 PDE6BP35913 854 aa23.57■■□□□ 1.36
CLN3-243ENST00000635973 PIP4K2AP48426 406 aaPredicted RBP23.57■■□□□ 1.36
CLN3-243ENST00000635973 CCDC27Q2M243 656 aa23.57■■□□□ 1.36
CLN3-243ENST00000635973 PDZRN3Q9UPQ7 1066 aa23.57■■□□□ 1.36
CLN3-243ENST00000635973 ZNF652Q9Y2D9 606 aa23.57■■□□□ 1.36
CLN3-243ENST00000635973 SBF1O95248 1867 aa23.57■■□□□ 1.36
CLN3-243ENST00000635973 BCORQ6W2J9 1755 aa23.56■■□□□ 1.36
CLN3-243ENST00000635973 PRAMEF22A3QJZ6 481 aa23.56■■□□□ 1.36
CLN3-243ENST00000635973 CAMTA2O94983 1202 aa23.56■■□□□ 1.36
CLN3-243ENST00000635973 ST5P78524 1137 aa23.55■■□□□ 1.36
CLN3-243ENST00000635973 NCBP3Q53F19 620 aaKnown RBP23.55■■□□□ 1.36
CLN3-243ENST00000635973 WWC1Q8IX03 1113 aa23.55■■□□□ 1.36
CLN3-243ENST00000635973 CNBD1Q8NA66 436 aa23.55■■□□□ 1.36
CLN3-243ENST00000635973 ZNF622Q969S3 477 aaKnown RBP eCLIP23.55■■□□□ 1.36
CLN3-243ENST00000635973 BRIP1Q9BX63 1249 aa23.55■■□□□ 1.36
CLN3-243ENST00000635973 CFAP44Q96MT7 982 aa23.54■■□□□ 1.36
CLN3-243ENST00000635973 IFT57Q9NWB7 429 aa23.54■■□□□ 1.36
CLN3-243ENST00000635973 ANKRD31Q8N7Z5 1873 aa23.53■■□□□ 1.36
CLN3-243ENST00000635973 CHL1O00533 1208 aa23.53■■□□□ 1.36
CLN3-243ENST00000635973 EIF4A1P60842 406 aaKnown RBP23.53■■□□□ 1.36
CLN3-243ENST00000635973 GNAI1P63096 354 aa23.53■■□□□ 1.36
CLN3-243ENST00000635973 PRR5LQ6MZQ0 368 aa23.53■■□□□ 1.36
CLN3-243ENST00000635973 CCDC24Q8N4L8 307 aa23.53■■□□□ 1.36
CLN3-243ENST00000635973 NGEFQ8N5V2 710 aa23.53■■□□□ 1.36
CLN3-243ENST00000635973 KDM2BQ8NHM5 1336 aa23.53■■□□□ 1.36
CLN3-243ENST00000635973 LAMB4A4D0S4 1761 aa23.52■■□□□ 1.36
CLN3-243ENST00000635973 CLEC4GQ6UXB4 293 aa23.52■■□□□ 1.36
CLN3-243ENST00000635973 C16orf71Q8IYS4 520 aaPredicted RBP23.52■■□□□ 1.36
CLN3-243ENST00000635973 CCDC88AQ3V6T2 1871 aa23.51■■□□□ 1.35
CLN3-243ENST00000635973 TOMM70O94826 608 aa23.5■■□□□ 1.35
CLN3-243ENST00000635973 RASSF7Q02833 373 aa23.5■■□□□ 1.35
CLN3-243ENST00000635973 NBPF5PQ86XG9 351 aaPredicted RBP23.5■■□□□ 1.35
CLN3-243ENST00000635973 NMRK2Q9NPI5 230 aa23.5■■□□□ 1.35
CLN3-243ENST00000635973 MBIPQ9NS73 344 aa23.5■■□□□ 1.35
CLN3-243ENST00000635973 CACNA1SQ13698 1873 aa23.49■■□□□ 1.35
CLN3-243ENST00000635973 LMNB1P20700 586 aa23.48■■□□□ 1.35
CLN3-243ENST00000635973 ZNF219Q9P2Y4 722 aaPredicted RBP23.48■■□□□ 1.35
CLN3-243ENST00000635973 NBPF26B4DH59 902 aa23.47■■□□□ 1.35
CLN3-243ENST00000635973 ZNF853P0CG23 659 aa23.47■■□□□ 1.35
CLN3-243ENST00000635973 NBPF10Q6P3W6 841 aaKnown RBP23.47■■□□□ 1.35
CLN3-243ENST00000635973 WDR63Q8IWG1 891 aa23.47■■□□□ 1.35
CLN3-243ENST00000635973 NBPF15Q8N660 670 aa23.47■■□□□ 1.35
CLN3-243ENST00000635973 NIP7Q9Y221 180 aaKnown RBP eCLIP23.47■■□□□ 1.35
CLN3-243ENST00000635973 IL16Q14005 1332 aa23.47■■□□□ 1.35
CLN3-243ENST00000635973 COL11A2P13942 1736 aaPredicted RBP23.47■■□□□ 1.35
CLN3-243ENST00000635973 TPTE2Q6XPS3 522 aa23.46■■□□□ 1.35
CLN3-243ENST00000635973 CNKSR1Q969H4 720 aa23.46■■□□□ 1.35
CLN3-243ENST00000635973 ZC3H4Q9UPT8 1303 aaKnown RBP23.45■■□□□ 1.34
CLN3-243ENST00000635973 RGL2O15211 777 aa23.45■■□□□ 1.34
CLN3-243ENST00000635973 C21orf2O43822 256 aa23.45■■□□□ 1.34
CLN3-243ENST00000635973 GTF2E1P29083 439 aaPredicted RBP23.45■■□□□ 1.34
CLN3-243ENST00000635973 TNRC6CQ9HCJ0 1690 aaKnown RBP23.44■■□□□ 1.34
CLN3-243ENST00000635973 STYK1Q6J9G0 422 aa23.44■■□□□ 1.34
CLN3-243ENST00000635973 TSR2Q969E8 191 aaKnown RBP23.44■■□□□ 1.34
CLN3-243ENST00000635973 MASTLQ96GX5 879 aa23.44■■□□□ 1.34
CLN3-243ENST00000635973 FAM177BA6PVY3 158 aa23.43■■□□□ 1.34
CLN3-243ENST00000635973 KRT24Q2M2I5 525 aa23.43■■□□□ 1.34
CLN3-243ENST00000635973 IFFO2Q5TF58 517 aa23.43■■□□□ 1.34
CLN3-243ENST00000635973 KIF6Q6ZMV9 814 aa23.43■■□□□ 1.34
CLN3-243ENST00000635973 RRAGCQ9HB90 399 aa23.43■■□□□ 1.34
CLN3-243ENST00000635973 SRGNP10124 158 aa23.42■■□□□ 1.34
CLN3-243ENST00000635973 EIF2S2P20042 333 aaKnown RBP23.42■■□□□ 1.34
CLN3-243ENST00000635973 APLP1P51693 650 aa23.42■■□□□ 1.34
CLN3-243ENST00000635973 TIAM2Q8IVF5 1701 aa23.42■■□□□ 1.34
CLN3-243ENST00000635973 MYL6BP14649 208 aa23.41■■□□□ 1.34
CLN3-243ENST00000635973 SOGA3Q5TF21 947 aa23.41■■□□□ 1.34
CLN3-243ENST00000635973 NUP98P52948 1817 aa23.4■■□□□ 1.34
CLN3-243ENST00000635973 ARFGEF2Q9Y6D5 1785 aa23.4■■□□□ 1.34
CLN3-243ENST00000635973 NFKBIEO00221 500 aa23.4■■□□□ 1.34
CLN3-243ENST00000635973 HLFQ16534 295 aa23.4■■□□□ 1.34
CLN3-243ENST00000635973 DUSP27Q5VZP5 1158 aa23.4■■□□□ 1.34
CLN3-243ENST00000635973 RBM46Q8TBY0 533 aaKnown RBP23.4■■□□□ 1.34
CLN3-243ENST00000635973 MYH16Q9H6N6 1097 aa23.4■■□□□ 1.34
CLN3-243ENST00000635973 FER1L6Q2WGJ9 1857 aa23.4■■□□□ 1.34
CLN3-243ENST00000635973 SLX4Q8IY92 1834 aa23.4■■□□□ 1.34
CLN3-243ENST00000635973 FANCIQ9NVI1 1328 aa23.39■■□□□ 1.34
CLN3-243ENST00000635973 HOXB7P09629 217 aa23.39■■□□□ 1.33
CLN3-243ENST00000635973 PRPF40BQ6NWY9 871 aaKnown RBP23.39■■□□□ 1.33
CLN3-243ENST00000635973 NECTIN2Q92692 538 aa23.39■■□□□ 1.33
CLN3-243ENST00000635973 DICER1Q9UPY3 1922 aaKnown RBP23.39■■□□□ 1.33
CLN3-243ENST00000635973 ZNF521Q96K83 1311 aa23.38■■□□□ 1.33
CLN3-243ENST00000635973 ERVV-1B6SEH8 477 aa23.38■■□□□ 1.33
CLN3-243ENST00000635973 NPR1P16066 1061 aa23.38■■□□□ 1.33
CLN3-243ENST00000635973 HDGFL1Q5TGJ6 251 aa23.38■■□□□ 1.33
CLN3-243ENST00000635973 DPY19L2Q6NUT2 758 aa23.38■■□□□ 1.33
CLN3-243ENST00000635973 NYXQ9GZU5 481 aa23.38■■□□□ 1.33
CLN3-243ENST00000635973 TAOK3Q9H2K8 898 aa23.38■■□□□ 1.33
CLN3-243ENST00000635973 MAP3K15Q6ZN16 1313 aa23.37■■□□□ 1.33
CLN3-243ENST00000635973 GLTPD2A6NH11 291 aa23.37■■□□□ 1.33
CLN3-243ENST00000635973 ELL2O00472 640 aaPredicted RBP23.37■■□□□ 1.33
CLN3-243ENST00000635973 HNRNPUQ00839 825 aaKnown RBP eCLIP23.37■■□□□ 1.33
CLN3-243ENST00000635973 GOLGA2Q08379 1002 aa23.37■■□□□ 1.33
CLN3-243ENST00000635973 ERFEQ4G0M1 354 aa23.37■■□□□ 1.33
CLN3-243ENST00000635973 ERBB4Q15303 1308 aa23.36■■□□□ 1.33
CLN3-243ENST00000635973 PRELPP51888 382 aa23.36■■□□□ 1.33
CLN3-243ENST00000635973 VEGFAP15692 232 aaPredicted RBP23.35■■□□□ 1.33
CLN3-243ENST00000635973 FSTL1Q12841 308 aa23.35■■□□□ 1.33
CLN3-243ENST00000635973 C8orf58Q8NAV2 365 aa23.35■■□□□ 1.33
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms