RNA–Protein interactions for RNA: ENST00000627587.2

PDLIM5-223, Transcript of PDZ and LIM domain 5, human

TSL 2

Gene PDLIM5, Length 1,853 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PDLIM5-223	ENST00000627587	MMP10	P09238	476 aa		12.12	□□□□□ -0.47
PDLIM5-223	ENST00000627587	IFFO2	Q5TF58	517 aa		12.12	□□□□□ -0.47
PDLIM5-223	ENST00000627587	ZNF831	Q5JPB2	1677 aa		12.12	□□□□□ -0.47
PDLIM5-223	ENST00000627587	EIF4A1	P60842	406 aa	Known RBP	12.12	□□□□□ -0.47
PDLIM5-223	ENST00000627587	DZIP1L	Q8IYY4	767 aa	Known RBP	12.12	□□□□□ -0.47
PDLIM5-223	ENST00000627587	CCDC87	Q9NVE4	849 aa		12.12	□□□□□ -0.47
PDLIM5-223	ENST00000627587	N4BP2	Q86UW6	1770 aa	Predicted RBP	12.11	□□□□□ -0.47
PDLIM5-223	ENST00000627587	UBR2	Q8IWV8	1755 aa		12.11	□□□□□ -0.47
PDLIM5-223	ENST00000627587	RPS6KA4	O75676	772 aa		12.11	□□□□□ -0.47
PDLIM5-223	ENST00000627587	ARHGAP45	Q92619	1136 aa		12.11	□□□□□ -0.47
PDLIM5-223	ENST00000627587	RBM42	Q9BTD8	480 aa	Known RBP	12.11	□□□□□ -0.47
PDLIM5-223	ENST00000627587	KDM2B	Q8NHM5	1336 aa		12.11	□□□□□ -0.47
PDLIM5-223	ENST00000627587	CNTNAP4	Q9C0A0	1308 aa		12.11	□□□□□ -0.47
PDLIM5-223	ENST00000627587	MS4A1	P11836	297 aa		12.1	□□□□□ -0.47
PDLIM5-223	ENST00000627587	RFC4	P35249	363 aa		12.1	□□□□□ -0.47
PDLIM5-223	ENST00000627587	CABP4	P57796	275 aa		12.1	□□□□□ -0.47
PDLIM5-223	ENST00000627587	TEF	Q10587	303 aa		12.1	□□□□□ -0.47
PDLIM5-223	ENST00000627587	MVP	Q14764	893 aa	Known RBP	12.1	□□□□□ -0.47
PDLIM5-223	ENST00000627587	SMIM5	Q71RC9	77 aa		12.1	□□□□□ -0.47
PDLIM5-223	ENST00000627587	TMEM57	Q8N5G2	664 aa		12.1	□□□□□ -0.47
PDLIM5-223	ENST00000627587	PARP3	Q9Y6F1	533 aa		12.1	□□□□□ -0.47
PDLIM5-223	ENST00000627587	ABCC4	O15439	1325 aa		12.1	□□□□□ -0.47
PDLIM5-223	ENST00000627587	BTBD11	A6QL63	1104 aa		12.1	□□□□□ -0.47
PDLIM5-223	ENST00000627587	ZNF526	Q8TF50	670 aa	Predicted RBP	12.1	□□□□□ -0.47
PDLIM5-223	ENST00000627587	ARHGEF1	Q92888	912 aa	Known RBP	12.1	□□□□□ -0.47
PDLIM5-223	ENST00000627587	SLC52A2	Q9HAB3	445 aa		12.1	□□□□□ -0.47
PDLIM5-223	ENST00000627587	IPO8	O15397	1037 aa	Known RBP	12.09	□□□□□ -0.47
PDLIM5-223	ENST00000627587	KIF13B	Q9NQT8	1826 aa		12.09	□□□□□ -0.47
PDLIM5-223	ENST00000627587	SOS1	Q07889	1333 aa	Predicted RBP	12.09	□□□□□ -0.47
PDLIM5-223	ENST00000627587	CIC	Q96RK0	1608 aa	Predicted RBP	12.08	□□□□□ -0.47
PDLIM5-223	ENST00000627587	G2E3	Q7L622	706 aa		12.08	□□□□□ -0.48
PDLIM5-223	ENST00000627587	FTSJ3	Q8IY81	847 aa	Known RBP	12.08	□□□□□ -0.48
PDLIM5-223	ENST00000627587	NFATC2IP	Q8NCF5	419 aa		12.08	□□□□□ -0.48
PDLIM5-223	ENST00000627587	KIF3C	O14782	793 aa		12.08	□□□□□ -0.48
PDLIM5-223	ENST00000627587	BCS1L	Q9Y276	419 aa		12.08	□□□□□ -0.48
PDLIM5-223	ENST00000627587	GYS1	P13807	737 aa		12.07	□□□□□ -0.48
PDLIM5-223	ENST00000627587	ARHGAP27	Q6ZUM4	889 aa		12.07	□□□□□ -0.48
PDLIM5-223	ENST00000627587	SLC4A9	Q96Q91	983 aa		12.07	□□□□□ -0.48
PDLIM5-223	ENST00000627587	PCDHB15	Q9Y5E8	787 aa		12.07	□□□□□ -0.48
PDLIM5-223	ENST00000627587	LAMB4	A4D0S4	1761 aa		12.07	□□□□□ -0.48
PDLIM5-223	ENST00000627587	PXDNL	A1KZ92	1463 aa		12.07	□□□□□ -0.48
PDLIM5-223	ENST00000627587	C10orf71	Q711Q0	1435 aa		12.07	□□□□□ -0.48
PDLIM5-223	ENST00000627587		A0A0G2JLW4	131 aa		12.06	□□□□□ -0.48
PDLIM5-223	ENST00000627587	PRAMEF22	A3QJZ6	481 aa		12.06	□□□□□ -0.48
PDLIM5-223	ENST00000627587	TOMM70	O94826	608 aa		12.06	□□□□□ -0.48
PDLIM5-223	ENST00000627587	APLP1	P51693	650 aa		12.06	□□□□□ -0.48
PDLIM5-223	ENST00000627587	SLC39A6	Q13433	755 aa		12.06	□□□□□ -0.48
PDLIM5-223	ENST00000627587	WWC3	Q9ULE0	1092 aa		12.06	□□□□□ -0.48
PDLIM5-223	ENST00000627587	IGHD	P01880	384 aa		12.06	□□□□□ -0.48
PDLIM5-223	ENST00000627587	HOXB7	P09629	217 aa		12.06	□□□□□ -0.48
PDLIM5-223	ENST00000627587	ZNF790	Q6PG37	636 aa		12.06	□□□□□ -0.48
PDLIM5-223	ENST00000627587	NECTIN2	Q92692	538 aa		12.06	□□□□□ -0.48
PDLIM5-223	ENST00000627587	KCP	Q6ZWJ8	1503 aa		12.05	□□□□□ -0.48
PDLIM5-223	ENST00000627587	DPEP1	P16444	411 aa		12.05	□□□□□ -0.48
PDLIM5-223	ENST00000627587	CCDC30	Q5VVM6	783 aa		12.05	□□□□□ -0.48
PDLIM5-223	ENST00000627587	SAMD1	Q6SPF0	538 aa	Predicted RBP	12.05	□□□□□ -0.48
PDLIM5-223	ENST00000627587	ITPRIP	Q8IWB1	547 aa		12.05	□□□□□ -0.48
PDLIM5-223	ENST00000627587	ZBTB40	Q9NUA8	1239 aa		12.05	□□□□□ -0.48
PDLIM5-223	ENST00000627587	PIM2	Q9P1W9	311 aa		12.05	□□□□□ -0.48
PDLIM5-223	ENST00000627587	C4A	P0C0L4	1744 aa		12.05	□□□□□ -0.48
PDLIM5-223	ENST00000627587	PTPRC	P08575	1304 aa		12.05	□□□□□ -0.48
PDLIM5-223	ENST00000627587	AAMP	Q13685	434 aa		12.04	□□□□□ -0.48
PDLIM5-223	ENST00000627587	DDX19B	Q9UMR2	479 aa		12.04	□□□□□ -0.48
PDLIM5-223	ENST00000627587	COL5A3	P25940	1745 aa	Predicted RBP	12.04	□□□□□ -0.48
PDLIM5-223	ENST00000627587	ZBTB7B	O15156	539 aa	Predicted RBP	12.04	□□□□□ -0.48
PDLIM5-223	ENST00000627587	HDGFL1	Q5TGJ6	251 aa		12.04	□□□□□ -0.48
PDLIM5-223	ENST00000627587	API5	Q9BZZ5	524 aa	Known RBP	12.04	□□□□□ -0.48
PDLIM5-223	ENST00000627587	GOLGB1	Q14789	3259 aa	Known RBP	12.03	□□□□□ -0.48
PDLIM5-223	ENST00000627587	PTCD1	O75127	700 aa	Known RBP	12.03	□□□□□ -0.48
PDLIM5-223	ENST00000627587	CRKL	P46109	303 aa	Known RBP	12.03	□□□□□ -0.48
PDLIM5-223	ENST00000627587	INTS3	Q68E01	1043 aa	Known RBP	12.03	□□□□□ -0.48
PDLIM5-223	ENST00000627587	SKAP1	Q86WV1	359 aa		12.03	□□□□□ -0.48
PDLIM5-223	ENST00000627587	ZNF496	Q96IT1	587 aa	Predicted RBP	12.03	□□□□□ -0.48
PDLIM5-223	ENST00000627587	KIAA1551	Q9HCM1	1747 aa		12.03	□□□□□ -0.48
PDLIM5-223	ENST00000627587	KCNA3	P22001	575 aa		12.02	□□□□□ -0.48
PDLIM5-223	ENST00000627587	FLII	Q13045	1269 aa		12.02	□□□□□ -0.48
PDLIM5-223	ENST00000627587	DALRD3	Q5D0E6	543 aa	Known RBP	12.02	□□□□□ -0.48
PDLIM5-223	ENST00000627587	STK31	Q9BXU1	1019 aa		12.02	□□□□□ -0.48
PDLIM5-223	ENST00000627587	CHMP4A	Q9BY43	222 aa		12.02	□□□□□ -0.48
PDLIM5-223	ENST00000627587	PHAX	Q9H814	394 aa	Known RBP	12.02	□□□□□ -0.48
PDLIM5-223	ENST00000627587	CHPF2	Q9P2E5	772 aa		12.02	□□□□□ -0.48
PDLIM5-223	ENST00000627587		F6X3S4	739 aa		12.02	□□□□□ -0.49
PDLIM5-223	ENST00000627587	ZPR1	O75312	459 aa		12.02	□□□□□ -0.49
PDLIM5-223	ENST00000627587	EIF2S2	P20042	333 aa	Known RBP	12.02	□□□□□ -0.49
PDLIM5-223	ENST00000627587	CENPQ	Q7L2Z9	268 aa	Predicted RBP	12.02	□□□□□ -0.49
PDLIM5-223	ENST00000627587	C16orf71	Q8IYS4	520 aa	Predicted RBP	12.02	□□□□□ -0.49
PDLIM5-223	ENST00000627587	RBM46	Q8TBY0	533 aa	Known RBP	12.02	□□□□□ -0.49
PDLIM5-223	ENST00000627587	USP42	Q9H9J4	1324 aa	Known RBP	12.01	□□□□□ -0.49
PDLIM5-223	ENST00000627587	MYH14	Q7Z406	1995 aa	Known RBP	12.01	□□□□□ -0.49
PDLIM5-223	ENST00000627587	PROSER3	Q2NL68	480 aa		12.01	□□□□□ -0.49
PDLIM5-223	ENST00000627587	C9orf131	Q5VYM1	1079 aa		12.01	□□□□□ -0.49
PDLIM5-223	ENST00000627587	ARFGEF1	Q9Y6D6	1849 aa		12.01	□□□□□ -0.49
PDLIM5-223	ENST00000627587	ANXA1	P04083	346 aa		12	□□□□□ -0.49
PDLIM5-223	ENST00000627587	TM4SF1	P30408	202 aa		12	□□□□□ -0.49
PDLIM5-223	ENST00000627587	PDIA6	Q15084	440 aa		12	□□□□□ -0.49
PDLIM5-223	ENST00000627587	FSTL1	Q12841	308 aa		12	□□□□□ -0.49
PDLIM5-223	ENST00000627587	INTS5	Q6P9B9	1019 aa	Known RBP	12	□□□□□ -0.49
PDLIM5-223	ENST00000627587	BRCA1	P38398	1863 aa	Known RBP	11.99	□□□□□ -0.49
PDLIM5-223	ENST00000627587	LRP10	Q7Z4F1	713 aa		11.99	□□□□□ -0.49
PDLIM5-223	ENST00000627587	CHMP4B	Q9H444	224 aa	Known RBP	11.99	□□□□□ -0.49

Retrieved 100 of 20,778 RNA–protein pairs in 166.4 ms