RNA–Protein interactions for RNA: ENST00000627317.1

PNKP-221, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 767 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-221ENST00000627317 TBC1D9BQ66K14 1250 aa19.02■□□□□ 0.64
PNKP-221ENST00000627317 CARMIL3Q8ND23 1372 aa19.02■□□□□ 0.64
PNKP-221ENST00000627317 AFDNP55196 1824 aaKnown RBP19.02■□□□□ 0.63
PNKP-221ENST00000627317 CHD4Q14839 1912 aa19.02■□□□□ 0.63
PNKP-221ENST00000627317 DUSP27Q5VZP5 1158 aa19.01■□□□□ 0.63
PNKP-221ENST00000627317 ZNF330Q9Y3S2 320 aaPredicted RBP19.01■□□□□ 0.63
PNKP-221ENST00000627317 RGL2O15211 777 aa19■□□□□ 0.63
PNKP-221ENST00000627317 HOXB7P09629 217 aa19■□□□□ 0.63
PNKP-221ENST00000627317 DZIP3Q86Y13 1208 aaKnown RBP19■□□□□ 0.63
PNKP-221ENST00000627317 WWC3Q9ULE0 1092 aa19■□□□□ 0.63
PNKP-221ENST00000627317 SERPINB2P05120 415 aa18.99■□□□□ 0.63
PNKP-221ENST00000627317 SLFN5Q08AF3 891 aa18.99■□□□□ 0.63
PNKP-221ENST00000627317 ZNF784Q8NCA9 323 aaPredicted RBP18.99■□□□□ 0.63
PNKP-221ENST00000627317 CDCA7LQ96GN5 454 aa18.99■□□□□ 0.63
PNKP-221ENST00000627317 ADCY9O60503 1353 aa18.98■□□□□ 0.63
PNKP-221ENST00000627317 ELL2O00472 640 aaPredicted RBP18.98■□□□□ 0.63
PNKP-221ENST00000627317 EIF2S2P20042 333 aaKnown RBP18.98■□□□□ 0.63
PNKP-221ENST00000627317 HDGFL1Q5TGJ6 251 aa18.98■□□□□ 0.63
PNKP-221ENST00000627317 C8orf58Q8NAV2 365 aa18.98■□□□□ 0.63
PNKP-221ENST00000627317 YTHDC1Q96MU7 727 aaKnown RBP18.98■□□□□ 0.63
PNKP-221ENST00000627317 EXOSC9Q06265 439 aaKnown RBP18.97■□□□□ 0.63
PNKP-221ENST00000627317 LRP10Q7Z4F1 713 aa18.97■□□□□ 0.63
PNKP-221ENST00000627317 CHRNA5P30532 468 aa18.96■□□□□ 0.63
PNKP-221ENST00000627317 TWISTNBQ3B726 338 aaPredicted RBP18.96■□□□□ 0.63
PNKP-221ENST00000627317 CLEC4GQ6UXB4 293 aa18.96■□□□□ 0.63
PNKP-221ENST00000627317 BICDL1Q6ZP65 573 aa18.96■□□□□ 0.63
PNKP-221ENST00000627317 NPM2Q86SE8 214 aaKnown RBP18.96■□□□□ 0.63
PNKP-221ENST00000627317 NECTIN2Q92692 538 aa18.96■□□□□ 0.63
PNKP-221ENST00000627317 ERBB4Q15303 1308 aa18.96■□□□□ 0.63
PNKP-221ENST00000627317 DLEC1Q9Y238 1755 aa18.96■□□□□ 0.63
PNKP-221ENST00000627317 TSPYL6Q8N831 410 aa18.95■□□□□ 0.62
PNKP-221ENST00000627317 CHMP4AQ9BY43 222 aa18.95■□□□□ 0.62
PNKP-221ENST00000627317 ANKRD31Q8N7Z5 1873 aa18.94■□□□□ 0.62
PNKP-221ENST00000627317 PDIA6Q15084 440 aa18.94■□□□□ 0.62
PNKP-221ENST00000627317 PRR5LQ6MZQ0 368 aa18.94■□□□□ 0.62
PNKP-221ENST00000627317 PIM2Q9P1W9 311 aa18.93■□□□□ 0.62
PNKP-221ENST00000627317 BCS1LQ9Y276 419 aa18.93■□□□□ 0.62
PNKP-221ENST00000627317 COL11A2P13942 1736 aaPredicted RBP18.93■□□□□ 0.62
PNKP-221ENST00000627317 ARFGEF1Q9Y6D6 1849 aa18.93■□□□□ 0.62
PNKP-221ENST00000627317 ATP10DQ9P241 1426 aa18.92■□□□□ 0.62
PNKP-221ENST00000627317 HLFQ16534 295 aa18.92■□□□□ 0.62
PNKP-221ENST00000627317 CCDC30Q5VVM6 783 aa18.92■□□□□ 0.62
PNKP-221ENST00000627317 TRMT2AQ8IZ69 625 aaKnown RBP18.92■□□□□ 0.62
PNKP-221ENST00000627317 SETDB2Q96T68 719 aa18.92■□□□□ 0.62
PNKP-221ENST00000627317 CHPF2Q9P2E5 772 aa18.92■□□□□ 0.62
PNKP-221ENST00000627317 MYL6BP14649 208 aa18.91■□□□□ 0.62
PNKP-221ENST00000627317 DALRD3Q5D0E6 543 aaKnown RBP18.91■□□□□ 0.62
PNKP-221ENST00000627317 TTLL7Q6ZT98 887 aa18.91■□□□□ 0.62
PNKP-221ENST00000627317 BRIP1Q9BX63 1249 aa18.91■□□□□ 0.62
PNKP-221ENST00000627317 ZNF652Q9Y2D9 606 aa18.91■□□□□ 0.62
PNKP-221ENST00000627317 ERVV-1B6SEH8 477 aa18.9■□□□□ 0.62
PNKP-221ENST00000627317 PROSER3Q2NL68 480 aa18.9■□□□□ 0.62
PNKP-221ENST00000627317 CNBD1Q8NA66 436 aa18.9■□□□□ 0.62
PNKP-221ENST00000627317 STK31Q9BXU1 1019 aa18.9■□□□□ 0.62
PNKP-221ENST00000627317 DDX21Q9NR30 783 aaKnown RBP eCLIP18.9■□□□□ 0.62
PNKP-221ENST00000627317 DBF4Q9UBU7 674 aaPredicted RBP18.9■□□□□ 0.62
PNKP-221ENST00000627317 MAP3K15Q6ZN16 1313 aa18.9■□□□□ 0.62
PNKP-221ENST00000627317 VAMP4O75379 141 aa18.89■□□□□ 0.61
PNKP-221ENST00000627317 ANXA1P04083 346 aa18.89■□□□□ 0.61
PNKP-221ENST00000627317 C2CD5Q86YS7 1000 aa18.88■□□□□ 0.61
PNKP-221ENST00000627317 CCDC24Q8N4L8 307 aa18.88■□□□□ 0.61
PNKP-221ENST00000627317 TCERG1O14776 1098 aaKnown RBP18.87■□□□□ 0.61
PNKP-221ENST00000627317 HYPKQ9NX55 129 aa18.87■□□□□ 0.61
PNKP-221ENST00000627317 NIP7Q9Y221 180 aaKnown RBP eCLIP18.87■□□□□ 0.61
PNKP-221ENST00000627317 IBTKQ9P2D0 1353 aaPredicted RBP18.86■□□□□ 0.61
PNKP-221ENST00000627317 UBN2Q6ZU65 1347 aa18.86■□□□□ 0.61
PNKP-221ENST00000627317 KLRG2A4D1S0 409 aaPredicted RBP18.86■□□□□ 0.61
PNKP-221ENST00000627317 CT47B1P0C2W7 299 aaPredicted RBP18.86■□□□□ 0.61
PNKP-221ENST00000627317 PDE6BP35913 854 aa18.86■□□□□ 0.61
PNKP-221ENST00000627317 KIF6Q6ZMV9 814 aa18.86■□□□□ 0.61
PNKP-221ENST00000627317 NBPF5PQ86XG9 351 aaPredicted RBP18.86■□□□□ 0.61
PNKP-221ENST00000627317 PDZRN3Q9UPQ7 1066 aa18.86■□□□□ 0.61
PNKP-221ENST00000627317 H0YIN7 160 aa18.85■□□□□ 0.61
PNKP-221ENST00000627317 ST5P78524 1137 aa18.84■□□□□ 0.61
PNKP-221ENST00000627317 AIMP1Q12904 312 aaKnown RBP18.84■□□□□ 0.61
PNKP-221ENST00000627317 ARHGAP27Q6ZUM4 889 aa18.84■□□□□ 0.61
PNKP-221ENST00000627317 TTLL6Q8N841 843 aa18.84■□□□□ 0.61
PNKP-221ENST00000627317 XAGE3Q8WTP9 111 aa18.84■□□□□ 0.61
PNKP-221ENST00000627317 ZNF428Q96B54 188 aa18.84■□□□□ 0.61
PNKP-221ENST00000627317 ZBTB3Q9H5J0 574 aa18.84■□□□□ 0.61
PNKP-221ENST00000627317 TNRC6CQ9HCJ0 1690 aaKnown RBP18.84■□□□□ 0.61
PNKP-221ENST00000627317 RIC1Q4ADV7 1423 aa18.83■□□□□ 0.61
PNKP-221ENST00000627317 ABCC12Q96J65 1359 aa18.83■□□□□ 0.61
PNKP-221ENST00000627317 SRGNP10124 158 aa18.83■□□□□ 0.6
PNKP-221ENST00000627317 GIGYF2Q6Y7W6 1299 aaKnown RBP18.83■□□□□ 0.6
PNKP-221ENST00000627317 ZNF34Q8IZ26 560 aa18.83■□□□□ 0.6
PNKP-221ENST00000627317 NUP98P52948 1817 aa18.83■□□□□ 0.6
PNKP-221ENST00000627317 SLC4A2P04920 1241 aa18.82■□□□□ 0.6
PNKP-221ENST00000627317 COPS6Q7L5N1 327 aa18.82■□□□□ 0.6
PNKP-221ENST00000627317 CACNA1FO60840 1977 aa18.81■□□□□ 0.6
PNKP-221ENST00000627317 STYK1Q6J9G0 422 aa18.81■□□□□ 0.6
PNKP-221ENST00000627317 TPTE2Q6XPS3 522 aa18.81■□□□□ 0.6
PNKP-221ENST00000627317 ARFGEF2Q9Y6D5 1785 aa18.81■□□□□ 0.6
PNKP-221ENST00000627317 NTSR2O95665 410 aa18.8■□□□□ 0.6
PNKP-221ENST00000627317 DDX58O95786 925 aaKnown RBP18.8■□□□□ 0.6
PNKP-221ENST00000627317 PRELPP51888 382 aa18.8■□□□□ 0.6
PNKP-221ENST00000627317 PHAXQ9H814 394 aaKnown RBP18.8■□□□□ 0.6
PNKP-221ENST00000627317 SMC4Q9NTJ3 1288 aa18.8■□□□□ 0.6
PNKP-221ENST00000627317 NFKBIEO00221 500 aa18.79■□□□□ 0.6
PNKP-221ENST00000627317 GPTP24298 496 aa18.79■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 11.4 ms