RNA–Protein interactions for RNA: ENST00000616974.1

LINC00540-202, long intergenic non-protein coding RNA 540, humanhuman

TSL 1 (best)

Gene LINC00540, Length 2,143 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-202ENST00000616974 SYT17Q9BSW7 474 aa17.5■□□□□ 0.39
LINC00540-202ENST00000616974 CARMIL3Q8ND23 1372 aa17.5■□□□□ 0.39
LINC00540-202ENST00000616974 ANKRD31Q8N7Z5 1873 aa17.5■□□□□ 0.39
LINC00540-202ENST00000616974 KIF13BQ9NQT8 1826 aa17.49■□□□□ 0.39
LINC00540-202ENST00000616974 POLRMTO00411 1230 aaKnown RBP17.49■□□□□ 0.39
LINC00540-202ENST00000616974 POLD1P28340 1107 aa17.49■□□□□ 0.39
LINC00540-202ENST00000616974 TM4SF1P30408 202 aa17.49■□□□□ 0.39
LINC00540-202ENST00000616974 HNRNPUQ00839 825 aaKnown RBP eCLIP17.49■□□□□ 0.39
LINC00540-202ENST00000616974 NCBP3Q53F19 620 aaKnown RBP17.49■□□□□ 0.39
LINC00540-202ENST00000616974 XAGE3Q8WTP9 111 aa17.48■□□□□ 0.39
LINC00540-202ENST00000616974 NRXN2Q9P2S2 1712 aa17.48■□□□□ 0.39
LINC00540-202ENST00000616974 TWISTNBQ3B726 338 aaPredicted RBP17.48■□□□□ 0.39
LINC00540-202ENST00000616974 COPS6Q7L5N1 327 aa17.48■□□□□ 0.39
LINC00540-202ENST00000616974 NLGN1Q8N2Q7 840 aa17.48■□□□□ 0.39
LINC00540-202ENST00000616974 ARFGEF2Q9Y6D5 1785 aa17.47■□□□□ 0.39
LINC00540-202ENST00000616974 FAM177BA6PVY3 158 aa17.47■□□□□ 0.39
LINC00540-202ENST00000616974 G2E3Q7L622 706 aa17.47■□□□□ 0.39
LINC00540-202ENST00000616974 DDX21Q9NR30 783 aaKnown RBP eCLIP17.47■□□□□ 0.39
LINC00540-202ENST00000616974 VAMP4O75379 141 aa17.46■□□□□ 0.39
LINC00540-202ENST00000616974 SLFN5Q08AF3 891 aa17.46■□□□□ 0.39
LINC00540-202ENST00000616974 ANKRD36CQ5JPF3 1778 aa17.45■□□□□ 0.38
LINC00540-202ENST00000616974 GPTP24298 496 aa17.45■□□□□ 0.38
LINC00540-202ENST00000616974 HMGB2P26583 209 aaKnown RBP17.45■□□□□ 0.38
LINC00540-202ENST00000616974 GOLGA2Q08379 1002 aa17.45■□□□□ 0.38
LINC00540-202ENST00000616974 UBN2Q6ZU65 1347 aa17.45■□□□□ 0.38
LINC00540-202ENST00000616974 HOXB7P09629 217 aa17.44■□□□□ 0.38
LINC00540-202ENST00000616974 BRCA1P38398 1863 aaKnown RBP17.44■□□□□ 0.38
LINC00540-202ENST00000616974 MAP3K15Q6ZN16 1313 aa17.44■□□□□ 0.38
LINC00540-202ENST00000616974 CACNA1FO60840 1977 aa17.44■□□□□ 0.38
LINC00540-202ENST00000616974 CACNA1SQ13698 1873 aa17.44■□□□□ 0.38
LINC00540-202ENST00000616974 A0A087WZG4 1122 aa17.44■□□□□ 0.38
LINC00540-202ENST00000616974 COL11A2P13942 1736 aaPredicted RBP17.43■□□□□ 0.38
LINC00540-202ENST00000616974 ERBB4Q15303 1308 aa17.43■□□□□ 0.38
LINC00540-202ENST00000616974 NPM2Q86SE8 214 aaKnown RBP17.43■□□□□ 0.38
LINC00540-202ENST00000616974 DBF4Q9UBU7 674 aaPredicted RBP17.43■□□□□ 0.38
LINC00540-202ENST00000616974 PARP3Q9Y6F1 533 aa17.43■□□□□ 0.38
LINC00540-202ENST00000616974 C10orf71Q711Q0 1435 aa17.43■□□□□ 0.38
LINC00540-202ENST00000616974 SERPINB2P05120 415 aa17.42■□□□□ 0.38
LINC00540-202ENST00000616974 TNRC6CQ9HCJ0 1690 aaKnown RBP17.42■□□□□ 0.38
LINC00540-202ENST00000616974 NIP7Q9Y221 180 aaKnown RBP eCLIP17.42■□□□□ 0.38
LINC00540-202ENST00000616974 TRMT2AQ8IZ69 625 aaKnown RBP17.41■□□□□ 0.38
LINC00540-202ENST00000616974 SYNE4Q8N205 404 aa17.41■□□□□ 0.38
LINC00540-202ENST00000616974 A0A0G2JLW4 131 aa17.41■□□□□ 0.38
LINC00540-202ENST00000616974 CHRNA5P30532 468 aa17.41■□□□□ 0.38
LINC00540-202ENST00000616974 PRR5LQ6MZQ0 368 aa17.41■□□□□ 0.38
LINC00540-202ENST00000616974 BCL2L13Q9BXK5 485 aa17.41■□□□□ 0.38
LINC00540-202ENST00000616974 MYH16Q9H6N6 1097 aa17.41■□□□□ 0.38
LINC00540-202ENST00000616974 PXDNLA1KZ92 1463 aa17.41■□□□□ 0.38
LINC00540-202ENST00000616974 TAF1P21675 1872 aa17.41■□□□□ 0.38
LINC00540-202ENST00000616974 SLC4A2P04920 1241 aa17.4■□□□□ 0.38
LINC00540-202ENST00000616974 NUTM1Q86Y26 1132 aa17.4■□□□□ 0.38
LINC00540-202ENST00000616974 E9PSI1 815 aa17.39■□□□□ 0.38
LINC00540-202ENST00000616974 GIGYF2Q6Y7W6 1299 aaKnown RBP17.39■□□□□ 0.38
LINC00540-202ENST00000616974 KIF6Q6ZMV9 814 aa17.39■□□□□ 0.38
LINC00540-202ENST00000616974 ATP5J2-PTCD1G3V325 749 aa17.39■□□□□ 0.37
LINC00540-202ENST00000616974 SETDB2Q96T68 719 aa17.39■□□□□ 0.37
LINC00540-202ENST00000616974 CCDC30Q5VVM6 783 aa17.38■□□□□ 0.37
LINC00540-202ENST00000616974 SUSD4Q5VX71 490 aa17.38■□□□□ 0.37
LINC00540-202ENST00000616974 SLC51AQ86UW1 340 aa17.38■□□□□ 0.37
LINC00540-202ENST00000616974 ABCC12Q96J65 1359 aa17.38■□□□□ 0.37
LINC00540-202ENST00000616974 YBX3P16989 372 aaKnown RBP eCLIP17.38■□□□□ 0.37
LINC00540-202ENST00000616974 KCNA3P22001 575 aa17.38■□□□□ 0.37
LINC00540-202ENST00000616974 CLEC4GQ6UXB4 293 aa17.38■□□□□ 0.37
LINC00540-202ENST00000616974 ADCY9O60503 1353 aa17.38■□□□□ 0.37
LINC00540-202ENST00000616974 ATP10DQ9P241 1426 aa17.37■□□□□ 0.37
LINC00540-202ENST00000616974 ERVV-1B6SEH8 477 aa17.37■□□□□ 0.37
LINC00540-202ENST00000616974 DPEP1P16444 411 aa17.37■□□□□ 0.37
LINC00540-202ENST00000616974 ANKRD13DQ6ZTN6 518 aa17.37■□□□□ 0.37
LINC00540-202ENST00000616974 ZNF34Q8IZ26 560 aa17.37■□□□□ 0.37
LINC00540-202ENST00000616974 HYPKQ9NX55 129 aa17.37■□□□□ 0.37
LINC00540-202ENST00000616974 LAMB2P55268 1798 aa17.36■□□□□ 0.37
LINC00540-202ENST00000616974 JARID2Q92833 1246 aaPredicted RBP17.36■□□□□ 0.37
LINC00540-202ENST00000616974 DLEC1Q9Y238 1755 aa17.36■□□□□ 0.37
LINC00540-202ENST00000616974 RTL5Q5HYW3 569 aaPredicted RBP17.36■□□□□ 0.37
LINC00540-202ENST00000616974 C3orf67Q6ZVT6 689 aa17.36■□□□□ 0.37
LINC00540-202ENST00000616974 PELP1Q8IZL8 1130 aaKnown RBP17.36■□□□□ 0.37
LINC00540-202ENST00000616974 CD2APQ9Y5K6 639 aa17.36■□□□□ 0.37
LINC00540-202ENST00000616974 PI4KAP2A4QPH2 592 aa17.35■□□□□ 0.37
LINC00540-202ENST00000616974 NBPF5PQ86XG9 351 aaPredicted RBP17.35■□□□□ 0.37
LINC00540-202ENST00000616974 PI4KAP1Q8N8J0 262 aa17.35■□□□□ 0.37
LINC00540-202ENST00000616974 F6X3S4 739 aa17.35■□□□□ 0.37
LINC00540-202ENST00000616974 FLIIQ13045 1269 aa17.35■□□□□ 0.37
LINC00540-202ENST00000616974 ERFEQ4G0M1 354 aa17.35■□□□□ 0.37
LINC00540-202ENST00000616974 CNBD1Q8NA66 436 aa17.35■□□□□ 0.37
LINC00540-202ENST00000616974 PLBD2Q8NHP8 589 aa17.35■□□□□ 0.37
LINC00540-202ENST00000616974 SSH1Q8WYL5 1049 aa17.35■□□□□ 0.37
LINC00540-202ENST00000616974 YTHDC1Q96MU7 727 aaKnown RBP17.35■□□□□ 0.37
LINC00540-202ENST00000616974 ZNF652Q9Y2D9 606 aa17.35■□□□□ 0.37
LINC00540-202ENST00000616974 DDX60Q8IY21 1712 aaKnown RBP17.34■□□□□ 0.37
LINC00540-202ENST00000616974 COL4A1P02462 1669 aa17.34■□□□□ 0.37
LINC00540-202ENST00000616974 NTSR2O95665 410 aa17.34■□□□□ 0.37
LINC00540-202ENST00000616974 STK31Q9BXU1 1019 aa17.33■□□□□ 0.37
LINC00540-202ENST00000616974 MAP3K2Q9Y2U5 619 aa17.33■□□□□ 0.37
LINC00540-202ENST00000616974 SLX4Q8IY92 1834 aa17.33■□□□□ 0.37
LINC00540-202ENST00000616974 ZBED9Q6R2W3 1325 aa17.33■□□□□ 0.37
LINC00540-202ENST00000616974 TCIRG1Q13488 830 aa17.33■□□□□ 0.36
LINC00540-202ENST00000616974 RIC3Q7Z5B4 369 aa17.33■□□□□ 0.36
LINC00540-202ENST00000616974 NLRP10Q86W26 655 aa17.33■□□□□ 0.36
LINC00540-202ENST00000616974 MYD88Q99836 296 aa17.33■□□□□ 0.36
LINC00540-202ENST00000616974 CWF19L2Q2TBE0 894 aaKnown RBP17.32■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 9.4 ms