RNA–Protein interactions for RNA: ENST00000611481.1

LINC00540-201, long intergenic non-protein coding RNA 540, humanhuman

TSL 4

Gene LINC00540, Length 588 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-201ENST00000611481 A0A1W2PNR3 127 aa8.32□□□□□ -1.08
LINC00540-201ENST00000611481 MAPTP10636 758 aaKnown RBP8.32□□□□□ -1.08
LINC00540-201ENST00000611481 TNP2Q05952 138 aa8.32□□□□□ -1.08
LINC00540-201ENST00000611481 DCDC2BA2VCK2 349 aa8.31□□□□□ -1.08
LINC00540-201ENST00000611481 TATP17735 454 aaPredicted RBP8.31□□□□□ -1.08
LINC00540-201ENST00000611481 CD33P20138 364 aa8.31□□□□□ -1.08
LINC00540-201ENST00000611481 WDR97A6NE52 1622 aa8.31□□□□□ -1.08
LINC00540-201ENST00000611481 TOP2BQ02880 1626 aa8.31□□□□□ -1.08
LINC00540-201ENST00000611481 KHNYNO15037 678 aaKnown RBP8.3□□□□□ -1.08
LINC00540-201ENST00000611481 CHRNA4P43681 627 aa8.3□□□□□ -1.08
LINC00540-201ENST00000611481 VAC14Q08AM6 782 aa8.3□□□□□ -1.08
LINC00540-201ENST00000611481 PLPP7Q8NBV4 271 aa8.3□□□□□ -1.08
LINC00540-201ENST00000611481 ZDHHC3Q9NYG2 299 aa8.3□□□□□ -1.08
LINC00540-201ENST00000611481 KLF15Q9UIH9 416 aa8.3□□□□□ -1.08
LINC00540-201ENST00000611481 CDK2AP1O14519 115 aa8.29□□□□□ -1.08
LINC00540-201ENST00000611481 FCHSD1Q86WN1 690 aa8.29□□□□□ -1.08
LINC00540-201ENST00000611481 SLC4A9Q96Q91 983 aa8.29□□□□□ -1.08
LINC00540-201ENST00000611481 SERTAD1Q9UHV2 236 aa8.29□□□□□ -1.08
LINC00540-201ENST00000611481 PRR12Q9ULL5 1215 aa8.29□□□□□ -1.08
LINC00540-201ENST00000611481 GJA3Q9Y6H8 435 aa8.29□□□□□ -1.08
LINC00540-201ENST00000611481 A6NJY4 79 aa8.28□□□□□ -1.08
LINC00540-201ENST00000611481 FAM157BP0CG42 384 aa8.28□□□□□ -1.08
LINC00540-201ENST00000611481 ZNF295-AS1Q8N0V1 137 aa8.28□□□□□ -1.08
LINC00540-201ENST00000611481 HCN2Q9UL51 889 aa8.28□□□□□ -1.08
LINC00540-201ENST00000611481 COL17A1Q9UMD9 1497 aaPredicted RBP8.27□□□□□ -1.09
LINC00540-201ENST00000611481 PCBP4P57723 403 aaKnown RBP8.27□□□□□ -1.09
LINC00540-201ENST00000611481 MTFR1Q15390 333 aa8.27□□□□□ -1.09
LINC00540-201ENST00000611481 WASHC4Q2M389 1173 aa8.27□□□□□ -1.09
LINC00540-201ENST00000611481 ZNF468Q5VIY5 522 aaPredicted RBP8.27□□□□□ -1.09
LINC00540-201ENST00000611481 ZIC5Q96T25 663 aa8.27□□□□□ -1.09
LINC00540-201ENST00000611481 IQSEC3Q9UPP2 1182 aaPredicted RBP8.27□□□□□ -1.09
LINC00540-201ENST00000611481 SHROOM2Q13796 1616 aa8.27□□□□□ -1.09
LINC00540-201ENST00000611481 TOP2AP11388 1531 aaKnown RBP8.27□□□□□ -1.09
LINC00540-201ENST00000611481 TMEM229AB2RXF0 380 aa8.26□□□□□ -1.09
LINC00540-201ENST00000611481 SOX11P35716 441 aa8.26□□□□□ -1.09
LINC00540-201ENST00000611481 SEMA3FQ13275 785 aa8.26□□□□□ -1.09
LINC00540-201ENST00000611481 SAMD5Q5TGI4 173 aa8.26□□□□□ -1.09
LINC00540-201ENST00000611481 GDPD2Q9HCC8 539 aa8.26□□□□□ -1.09
LINC00540-201ENST00000611481 CABP1Q9NZU7 370 aa8.26□□□□□ -1.09
LINC00540-201ENST00000611481 PBRM1Q86U86 1689 aa8.25□□□□□ -1.09
LINC00540-201ENST00000611481 ABL2P42684 1182 aa8.25□□□□□ -1.09
LINC00540-201ENST00000611481 LAMC2Q13753 1193 aa8.25□□□□□ -1.09
LINC00540-201ENST00000611481 BICDL1Q6ZP65 573 aa8.25□□□□□ -1.09
LINC00540-201ENST00000611481 TRIM11Q96F44 468 aa8.25□□□□□ -1.09
LINC00540-201ENST00000611481 PLVAPQ9BX97 442 aa8.25□□□□□ -1.09
LINC00540-201ENST00000611481 MARK1Q9P0L2 795 aa8.25□□□□□ -1.09
LINC00540-201ENST00000611481 PRG4Q92954 1404 aaPredicted RBP8.25□□□□□ -1.09
LINC00540-201ENST00000611481 GRIN2AQ12879 1464 aa8.25□□□□□ -1.09
LINC00540-201ENST00000611481 FGD5Q6ZNL6 1462 aa8.25□□□□□ -1.09
LINC00540-201ENST00000611481 NUP160Q12769 1436 aa8.24□□□□□ -1.09
LINC00540-201ENST00000611481 SPATA31C1P0DKV0 1188 aa8.24□□□□□ -1.09
LINC00540-201ENST00000611481 GATA4P43694 442 aa8.24□□□□□ -1.09
LINC00540-201ENST00000611481 DOC2BQ14184 412 aa8.24□□□□□ -1.09
LINC00540-201ENST00000611481 SEMA6BQ9H3T3 888 aa8.24□□□□□ -1.09
LINC00540-201ENST00000611481 USP3Q9Y6I4 520 aa8.24□□□□□ -1.09
LINC00540-201ENST00000611481 ADCY10Q96PN6 1610 aa8.24□□□□□ -1.09
LINC00540-201ENST00000611481 PPRC1Q5VV67 1664 aaKnown RBP8.24□□□□□ -1.09
LINC00540-201ENST00000611481 BACH1O14867 736 aa8.23□□□□□ -1.09
LINC00540-201ENST00000611481 ALAS2P22557 587 aa8.23□□□□□ -1.09
LINC00540-201ENST00000611481 PCDHGA11Q9Y5H2 935 aa8.23□□□□□ -1.09
LINC00540-201ENST00000611481 ELOA3CA0A087WX78 387 aaPredicted RBP8.22□□□□□ -1.09
LINC00540-201ENST00000611481 SPDYE3A6NKU9 549 aa8.22□□□□□ -1.09
LINC00540-201ENST00000611481 ELOA3DA6NLF2 546 aaPredicted RBP8.22□□□□□ -1.09
LINC00540-201ENST00000611481 EFSO43281 561 aa8.22□□□□□ -1.09
LINC00540-201ENST00000611481 ELOA3BQ3SY89 546 aa8.22□□□□□ -1.09
LINC00540-201ENST00000611481 ELOA3Q8NG57 546 aa8.22□□□□□ -1.09
LINC00540-201ENST00000611481 STRN4Q9NRL3 753 aa8.22□□□□□ -1.09
LINC00540-201ENST00000611481 PCF11O94913 1555 aaKnown RBP8.22□□□□□ -1.09
LINC00540-201ENST00000611481 PARP3Q9Y6F1 533 aa8.21□□□□□ -1.1
LINC00540-201ENST00000611481 CCDC88BA6NC98 1476 aa8.2□□□□□ -1.1
LINC00540-201ENST00000611481 ITGB7P26010 798 aa8.2□□□□□ -1.1
LINC00540-201ENST00000611481 EML3Q32P44 896 aa8.2□□□□□ -1.1
LINC00540-201ENST00000611481 PRRT3Q5FWE3 981 aa8.2□□□□□ -1.1
LINC00540-201ENST00000611481 SYT9Q86SS6 491 aa8.2□□□□□ -1.1
LINC00540-201ENST00000611481 SCHIP1Q9P0W5 487 aaPredicted RBP8.2□□□□□ -1.1
LINC00540-201ENST00000611481 PTPRMP28827 1452 aa8.19□□□□□ -1.1
LINC00540-201ENST00000611481 TXLNAP40222 546 aa8.19□□□□□ -1.1
LINC00540-201ENST00000611481 HSPA2P54652 639 aa8.19□□□□□ -1.1
LINC00540-201ENST00000611481 KRTAP4-8Q9BYQ9 185 aa8.19□□□□□ -1.1
LINC00540-201ENST00000611481 NEUROD4Q9HD90 331 aa8.19□□□□□ -1.1
LINC00540-201ENST00000611481 NOD1Q9Y239 953 aa8.19□□□□□ -1.1
LINC00540-201ENST00000611481 LZTS3O60299 673 aaPredicted RBP8.18□□□□□ -1.1
LINC00540-201ENST00000611481 SIN3BO75182 1162 aa8.18□□□□□ -1.1
LINC00540-201ENST00000611481 TEAD4Q15561 434 aa8.18□□□□□ -1.1
LINC00540-201ENST00000611481 ZMYM1Q5SVZ6 1142 aa8.18□□□□□ -1.1
LINC00540-201ENST00000611481 LRRC69Q6ZNQ3 347 aa8.18□□□□□ -1.1
LINC00540-201ENST00000611481 L3MBTL2Q969R5 705 aa8.18□□□□□ -1.1
LINC00540-201ENST00000611481 ADARB2-AS1A8MUL3 147 aa8.17□□□□□ -1.1
LINC00540-201ENST00000611481 PIK3CDO00329 1044 aa8.17□□□□□ -1.1
LINC00540-201ENST00000611481 APBA3O96018 575 aa8.17□□□□□ -1.1
LINC00540-201ENST00000611481 GTF2IP78347 998 aa8.17□□□□□ -1.1
LINC00540-201ENST00000611481 PSME1Q06323 249 aa8.17□□□□□ -1.1
LINC00540-201ENST00000611481 ZDHHC1Q8WTX9 485 aa8.17□□□□□ -1.1
LINC00540-201ENST00000611481 MDFIQ99750 246 aa8.17□□□□□ -1.1
LINC00540-201ENST00000611481 ZNF358Q9NW07 568 aa8.17□□□□□ -1.1
LINC00540-201ENST00000611481 GPC6Q9Y625 555 aaPredicted RBP8.17□□□□□ -1.1
LINC00540-201ENST00000611481 SKIP12755 728 aa8.16□□□□□ -1.1
LINC00540-201ENST00000611481 NOS2P35228 1153 aa8.16□□□□□ -1.1
LINC00540-201ENST00000611481 SERBP1Q8NC51 408 aaKnown RBP eCLIP8.16□□□□□ -1.1
LINC00540-201ENST00000611481 ZNF232Q9UNY5 417 aa8.16□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms