RNA–Protein interactions for RNA: ENST00000601816.3

PNKP-216, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 3

Gene PNKP, Length 682 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-216ENST00000601816 ST5P78524 1137 aa34.17■■■■□ 3.06
PNKP-216ENST00000601816 ANKRD31Q8N7Z5 1873 aa34.17■■■■□ 3.06
PNKP-216ENST00000601816 TTLL6Q8N841 843 aa34.17■■■■□ 3.06
PNKP-216ENST00000601816 NGEFQ8N5V2 710 aa34.15■■■■□ 3.06
PNKP-216ENST00000601816 NBPF5PQ86XG9 351 aaPredicted RBP34.14■■■■□ 3.06
PNKP-216ENST00000601816 NIP7Q9Y221 180 aaKnown RBP eCLIP34.14■■■■□ 3.06
PNKP-216ENST00000601816 C9orf131Q5VYM1 1079 aa34.13■■■■□ 3.05
PNKP-216ENST00000601816 ERBB4Q15303 1308 aa34.12■■■■□ 3.05
PNKP-216ENST00000601816 MYL6BP14649 208 aa34.12■■■■□ 3.05
PNKP-216ENST00000601816 ZNF622Q969S3 477 aaKnown RBP eCLIP34.12■■■■□ 3.05
PNKP-216ENST00000601816 TRIM35Q9UPQ4 493 aa34.12■■■■□ 3.05
PNKP-216ENST00000601816 HLFQ16534 295 aa34.11■■■■□ 3.05
PNKP-216ENST00000601816 KIF6Q6ZMV9 814 aa34.11■■■■□ 3.05
PNKP-216ENST00000601816 COL11A2P13942 1736 aaPredicted RBP34.1■■■■□ 3.05
PNKP-216ENST00000601816 MAP3K15Q6ZN16 1313 aa34.08■■■■□ 3.05
PNKP-216ENST00000601816 ERVV-1B6SEH8 477 aa34.08■■■■□ 3.05
PNKP-216ENST00000601816 TTLL7Q6ZT98 887 aa34.08■■■■□ 3.05
PNKP-216ENST00000601816 RNF181Q9P0P0 153 aa34.08■■■■□ 3.05
PNKP-216ENST00000601816 EIF2S2P20042 333 aaKnown RBP34.07■■■■□ 3.04
PNKP-216ENST00000601816 TPTE2Q6XPS3 522 aa34.07■■■■□ 3.04
PNKP-216ENST00000601816 LAS1LQ9Y4W2 734 aaKnown RBP34.07■■■■□ 3.04
PNKP-216ENST00000601816 CHL1O00533 1208 aa34.06■■■■□ 3.04
PNKP-216ENST00000601816 FAM177BA6PVY3 158 aa34.05■■■■□ 3.04
PNKP-216ENST00000601816 RASSF7Q02833 373 aa34.05■■■■□ 3.04
PNKP-216ENST00000601816 ZNF316A6NFI3 1004 aaPredicted RBP34.04■■■■□ 3.04
PNKP-216ENST00000601816 STYK1Q6J9G0 422 aa34.04■■■■□ 3.04
PNKP-216ENST00000601816 SRGNP10124 158 aa34.03■■■■□ 3.04
PNKP-216ENST00000601816 CNKSR1Q969H4 720 aa34.03■■■■□ 3.04
PNKP-216ENST00000601816 ZBTB3Q9H5J0 574 aa34.03■■■■□ 3.04
PNKP-216ENST00000601816 MASTLQ96GX5 879 aa34.02■■■■□ 3.04
PNKP-216ENST00000601816 SENP3-EIF4A1A0A087X0R7 540 aa34.01■■■■□ 3.03
PNKP-216ENST00000601816 APAF1O14727 1248 aa34■■■■□ 3.03
PNKP-216ENST00000601816 GTF2E1P29083 439 aaPredicted RBP34■■■■□ 3.03
PNKP-216ENST00000601816 PDIA6Q15084 440 aa34■■■■□ 3.03
PNKP-216ENST00000601816 C21orf2O43822 256 aa33.99■■■■□ 3.03
PNKP-216ENST00000601816 LRP10Q7Z4F1 713 aa33.99■■■■□ 3.03
PNKP-216ENST00000601816 NYXQ9GZU5 481 aa33.99■■■■□ 3.03
PNKP-216ENST00000601816 ZNF219Q9P2Y4 722 aaPredicted RBP33.99■■■■□ 3.03
PNKP-216ENST00000601816 NUP98P52948 1817 aa33.99■■■■□ 3.03
PNKP-216ENST00000601816 SBF1O95248 1867 aa33.99■■■■□ 3.03
PNKP-216ENST00000601816 KIF3CO14782 793 aa33.98■■■■□ 3.03
PNKP-216ENST00000601816 LMNB1P20700 586 aa33.98■■■■□ 3.03
PNKP-216ENST00000601816 KRT24Q2M2I5 525 aa33.98■■■■□ 3.03
PNKP-216ENST00000601816 NECTIN2Q92692 538 aa33.98■■■■□ 3.03
PNKP-216ENST00000601816 NFKBIEO00221 500 aa33.97■■■■□ 3.03
PNKP-216ENST00000601816 GPTP24298 496 aa33.97■■■■□ 3.03
PNKP-216ENST00000601816 PROSER3Q2NL68 480 aa33.97■■■■□ 3.03
PNKP-216ENST00000601816 PRPF40BQ6NWY9 871 aaKnown RBP33.97■■■■□ 3.03
PNKP-216ENST00000601816 ANXA1P04083 346 aa33.96■■■■□ 3.03
PNKP-216ENST00000601816 NPR1P16066 1061 aa33.96■■■■□ 3.03
PNKP-216ENST00000601816 GIGYF2Q6Y7W6 1299 aaKnown RBP33.96■■■■□ 3.03
PNKP-216ENST00000601816 CFAP44Q96MT7 982 aa33.96■■■■□ 3.03
PNKP-216ENST00000601816 KLRG2A4D1S0 409 aaPredicted RBP33.95■■■■□ 3.03
PNKP-216ENST00000601816 CCDC184Q52MB2 194 aa33.94■■■■□ 3.02
PNKP-216ENST00000601816 UBN2Q6ZU65 1347 aa33.94■■■■□ 3.02
PNKP-216ENST00000601816 KDM2BQ8NHM5 1336 aa33.94■■■■□ 3.02
PNKP-216ENST00000601816 ZC3H4Q9UPT8 1303 aaKnown RBP33.94■■■■□ 3.02
PNKP-216ENST00000601816 IBTKQ9P2D0 1353 aaPredicted RBP33.94■■■■□ 3.02
PNKP-216ENST00000601816 PRELPP51888 382 aa33.93■■■■□ 3.02
PNKP-216ENST00000601816 NMRK2Q9NPI5 230 aa33.93■■■■□ 3.02
PNKP-216ENST00000601816 ARFGEF2Q9Y6D5 1785 aa33.93■■■■□ 3.02
PNKP-216ENST00000601816 SLX4Q8IY92 1834 aa33.93■■■■□ 3.02
PNKP-216ENST00000601816 CALD1Q05682 793 aaKnown RBP33.92■■■■□ 3.02
PNKP-216ENST00000601816 SOGA3Q5TF21 947 aa33.92■■■■□ 3.02
PNKP-216ENST00000601816 NUTM1Q86Y26 1132 aa33.92■■■■□ 3.02
PNKP-216ENST00000601816 ZNF34Q8IZ26 560 aa33.92■■■■□ 3.02
PNKP-216ENST00000601816 DDX21Q9NR30 783 aaKnown RBP eCLIP33.92■■■■□ 3.02
PNKP-216ENST00000601816 ABCC12Q96J65 1359 aa33.92■■■■□ 3.02
PNKP-216ENST00000601816 CACNA1SQ13698 1873 aa33.91■■■■□ 3.02
PNKP-216ENST00000601816 HOXB7P09629 217 aa33.91■■■■□ 3.02
PNKP-216ENST00000601816 ERFEQ4G0M1 354 aa33.9■■■■□ 3.02
PNKP-216ENST00000601816 HDGFL1Q5TGJ6 251 aa33.9■■■■□ 3.02
PNKP-216ENST00000601816 SUSD4Q5VX71 490 aa33.9■■■■□ 3.02
PNKP-216ENST00000601816 COPS6Q7L5N1 327 aa33.9■■■■□ 3.02
PNKP-216ENST00000601816 MBIPQ9NS73 344 aa33.9■■■■□ 3.02
PNKP-216ENST00000601816 ANP32CO43423 234 aa33.89■■■■□ 3.02
PNKP-216ENST00000601816 PARP10Q53GL7 1025 aa33.89■■■■□ 3.02
PNKP-216ENST00000601816 XAGE3Q8WTP9 111 aa33.89■■■■□ 3.02
PNKP-216ENST00000601816 TNRC6CQ9HCJ0 1690 aaKnown RBP33.88■■■■□ 3.01
PNKP-216ENST00000601816 AIMP1Q12904 312 aaKnown RBP33.88■■■■□ 3.01
PNKP-216ENST00000601816 TAOK3Q9H2K8 898 aa33.88■■■■□ 3.01
PNKP-216ENST00000601816 IFT57Q9NWB7 429 aa33.88■■■■□ 3.01
PNKP-216ENST00000601816 CHPF2Q9P2E5 772 aa33.88■■■■□ 3.01
PNKP-216ENST00000601816 FER1L6Q2WGJ9 1857 aa33.88■■■■□ 3.01
PNKP-216ENST00000601816 LTBP3Q9NS15 1303 aa33.87■■■■□ 3.01
PNKP-216ENST00000601816 ZNF853P0CG23 659 aa33.87■■■■□ 3.01
PNKP-216ENST00000601816 PPP1R42Q7Z4L9 355 aa33.87■■■■□ 3.01
PNKP-216ENST00000601816 GNAI1P63096 354 aa33.86■■■■□ 3.01
PNKP-216ENST00000601816 DUSP27Q5VZP5 1158 aa33.86■■■■□ 3.01
PNKP-216ENST00000601816 RIC1Q4ADV7 1423 aa33.86■■■■□ 3.01
PNKP-216ENST00000601816 TIAM2Q8IVF5 1701 aa33.85■■■■□ 3.01
PNKP-216ENST00000601816 NTSR2O95665 410 aa33.85■■■■□ 3.01
PNKP-216ENST00000601816 CRY2Q49AN0 593 aa33.85■■■■□ 3.01
PNKP-216ENST00000601816 HSP90AB3PQ58FF7 597 aa33.85■■■■□ 3.01
PNKP-216ENST00000601816 C7orf43Q8WVR3 580 aa33.85■■■■□ 3.01
PNKP-216ENST00000601816 TOMM70O94826 608 aa33.84■■■■□ 3.01
PNKP-216ENST00000601816 ALDH1B1P30837 517 aa33.84■■■■□ 3.01
PNKP-216ENST00000601816 CCDC93Q567U6 631 aa33.84■■■■□ 3.01
PNKP-216ENST00000601816 CCDC88AQ3V6T2 1871 aa33.83■■■■□ 3.01
PNKP-216ENST00000601816 MRS2Q9HD23 443 aa33.83■■■■□ 3.01
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms