RNA–Protein interactions for RNA: ENST00000600289.6

LSM4-206, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM4, Length 1,113 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-206ENST00000600289 BCS1LQ9Y276 419 aa21.13■□□□□ 0.97
LSM4-206ENST00000600289 NBPF26B4DH59 902 aa21.12■□□□□ 0.97
LSM4-206ENST00000600289 RGL2O15211 777 aa21.12■□□□□ 0.97
LSM4-206ENST00000600289 NBPF10Q6P3W6 841 aaKnown RBP21.12■□□□□ 0.97
LSM4-206ENST00000600289 NBPF15Q8N660 670 aa21.12■□□□□ 0.97
LSM4-206ENST00000600289 DLEC1Q9Y238 1755 aa21.12■□□□□ 0.97
LSM4-206ENST00000600289 ARHGAP27Q6ZUM4 889 aa21.11■□□□□ 0.97
LSM4-206ENST00000600289 IFT57Q9NWB7 429 aa21.11■□□□□ 0.97
LSM4-206ENST00000600289 PARP3Q9Y6F1 533 aa21.11■□□□□ 0.97
LSM4-206ENST00000600289 DDR1Q08345 913 aa21.1■□□□□ 0.97
LSM4-206ENST00000600289 NPM2Q86SE8 214 aaKnown RBP21.1■□□□□ 0.97
LSM4-206ENST00000600289 POLRMTO00411 1230 aaKnown RBP21.09■□□□□ 0.97
LSM4-206ENST00000600289 CAMTA2O94983 1202 aa21.09■□□□□ 0.97
LSM4-206ENST00000600289 HOXB7P09629 217 aa21.09■□□□□ 0.97
LSM4-206ENST00000600289 GNAI1P63096 354 aa21.09■□□□□ 0.97
LSM4-206ENST00000600289 C9orf131Q5VYM1 1079 aa21.09■□□□□ 0.97
LSM4-206ENST00000600289 ANKRD36CQ5JPF3 1778 aa21.08■□□□□ 0.97
LSM4-206ENST00000600289 DZIP3Q86Y13 1208 aaKnown RBP21.08■□□□□ 0.97
LSM4-206ENST00000600289 ANKRD31Q8N7Z5 1873 aa21.08■□□□□ 0.97
LSM4-206ENST00000600289 A0A0G2JLW4 131 aa21.07■□□□□ 0.96
LSM4-206ENST00000600289 TGFB2P61812 414 aa21.07■□□□□ 0.96
LSM4-206ENST00000600289 NFIXQ14938 502 aa21.07■□□□□ 0.96
LSM4-206ENST00000600289 MBIPQ9NS73 344 aa21.07■□□□□ 0.96
LSM4-206ENST00000600289 PCDH10Q9P2E7 1040 aa21.07■□□□□ 0.96
LSM4-206ENST00000600289 TBC1D2BQ9UPU7 963 aa21.07■□□□□ 0.96
LSM4-206ENST00000600289 ZNF330Q9Y3S2 320 aaPredicted RBP21.07■□□□□ 0.96
LSM4-206ENST00000600289 KDM2BQ8NHM5 1336 aa21.06■□□□□ 0.96
LSM4-206ENST00000600289 CCER2I3L3R5 266 aa21.06■□□□□ 0.96
LSM4-206ENST00000600289 PIP4K2AP48426 406 aaPredicted RBP21.06■□□□□ 0.96
LSM4-206ENST00000600289 CLEC4GQ6UXB4 293 aa21.06■□□□□ 0.96
LSM4-206ENST00000600289 WWC1Q8IX03 1113 aa21.06■□□□□ 0.96
LSM4-206ENST00000600289 NGEFQ8N5V2 710 aa21.06■□□□□ 0.96
LSM4-206ENST00000600289 SMC1BQ8NDV3 1235 aa21.06■□□□□ 0.96
LSM4-206ENST00000600289 RRAGCQ9HB90 399 aa21.06■□□□□ 0.96
LSM4-206ENST00000600289 LAS1LQ9Y4W2 734 aaKnown RBP21.06■□□□□ 0.96
LSM4-206ENST00000600289 IL16Q14005 1332 aa21.05■□□□□ 0.96
LSM4-206ENST00000600289 CARMIL3Q8ND23 1372 aa21.05■□□□□ 0.96
LSM4-206ENST00000600289 PDIA6Q15084 440 aa21.03■□□□□ 0.96
LSM4-206ENST00000600289 TBC1D9BQ66K14 1250 aa21.03■□□□□ 0.96
LSM4-206ENST00000600289 LRP10Q7Z4F1 713 aa21.03■□□□□ 0.96
LSM4-206ENST00000600289 FAM9BQ8IZU0 186 aa21.03■□□□□ 0.96
LSM4-206ENST00000600289 ZNF652Q9Y2D9 606 aa21.03■□□□□ 0.96
LSM4-206ENST00000600289 DPEP1P16444 411 aa21.02■□□□□ 0.96
LSM4-206ENST00000600289 CCDC88AQ3V6T2 1871 aa21.01■□□□□ 0.95
LSM4-206ENST00000600289 ERVV-1B6SEH8 477 aa21.01■□□□□ 0.95
LSM4-206ENST00000600289 SERPINB2P05120 415 aa21.01■□□□□ 0.95
LSM4-206ENST00000600289 KRT24Q2M2I5 525 aa21.01■□□□□ 0.95
LSM4-206ENST00000600289 COL11A2P13942 1736 aaPredicted RBP21.01■□□□□ 0.95
LSM4-206ENST00000600289 TIAM2Q8IVF5 1701 aa21.01■□□□□ 0.95
LSM4-206ENST00000600289 ARFGEF2Q9Y6D5 1785 aa21■□□□□ 0.95
LSM4-206ENST00000600289 CACNA1FO60840 1977 aa21■□□□□ 0.95
LSM4-206ENST00000600289 KCNA3P22001 575 aa21■□□□□ 0.95
LSM4-206ENST00000600289 WDR63Q8IWG1 891 aa21■□□□□ 0.95
LSM4-206ENST00000600289 MAP3K15Q6ZN16 1313 aa21■□□□□ 0.95
LSM4-206ENST00000600289 MYL6BP14649 208 aa20.99■□□□□ 0.95
LSM4-206ENST00000600289 EIF2S2P20042 333 aaKnown RBP20.99■□□□□ 0.95
LSM4-206ENST00000600289 DDX21Q9NR30 783 aaKnown RBP eCLIP20.99■□□□□ 0.95
LSM4-206ENST00000600289 RNF181Q9P0P0 153 aa20.99■□□□□ 0.95
LSM4-206ENST00000600289 DUSP27Q5VZP5 1158 aa20.98■□□□□ 0.95
LSM4-206ENST00000600289 KIF6Q6ZMV9 814 aa20.98■□□□□ 0.95
LSM4-206ENST00000600289 SETDB2Q96T68 719 aa20.98■□□□□ 0.95
LSM4-206ENST00000600289 HDGFL1Q5TGJ6 251 aa20.97■□□□□ 0.95
LSM4-206ENST00000600289 TTLL7Q6ZT98 887 aa20.97■□□□□ 0.95
LSM4-206ENST00000600289 HLFQ16534 295 aa20.96■□□□□ 0.95
LSM4-206ENST00000600289 PROSER3Q2NL68 480 aa20.96■□□□□ 0.95
LSM4-206ENST00000600289 BICDL1Q6ZP65 573 aa20.96■□□□□ 0.95
LSM4-206ENST00000600289 CHMP4AQ9BY43 222 aa20.96■□□□□ 0.95
LSM4-206ENST00000600289 DBF4Q9UBU7 674 aaPredicted RBP20.96■□□□□ 0.95
LSM4-206ENST00000600289 IBTKQ9P2D0 1353 aaPredicted RBP20.96■□□□□ 0.95
LSM4-206ENST00000600289 DIEXFQ68CQ4 756 aaKnown RBP20.95■□□□□ 0.94
LSM4-206ENST00000600289 PRR5LQ6MZQ0 368 aa20.95■□□□□ 0.94
LSM4-206ENST00000600289 FAM161AQ3B820 660 aa20.94■□□□□ 0.94
LSM4-206ENST00000600289 CHPF2Q9P2E5 772 aa20.94■□□□□ 0.94
LSM4-206ENST00000600289 PDZRN3Q9UPQ7 1066 aa20.94■□□□□ 0.94
LSM4-206ENST00000600289 ZNF521Q96K83 1311 aa20.94■□□□□ 0.94
LSM4-206ENST00000600289 CACNA1SQ13698 1873 aa20.93■□□□□ 0.94
LSM4-206ENST00000600289 FOXN1O15353 648 aa20.93■□□□□ 0.94
LSM4-206ENST00000600289 GIGYF2Q6Y7W6 1299 aaKnown RBP20.93■□□□□ 0.94
LSM4-206ENST00000600289 CNBD1Q8NA66 436 aa20.93■□□□□ 0.94
LSM4-206ENST00000600289 C8orf58Q8NAV2 365 aa20.93■□□□□ 0.94
LSM4-206ENST00000600289 BRIP1Q9BX63 1249 aa20.93■□□□□ 0.94
LSM4-206ENST00000600289 NIP7Q9Y221 180 aaKnown RBP eCLIP20.93■□□□□ 0.94
LSM4-206ENST00000600289 RIC1Q4ADV7 1423 aa20.93■□□□□ 0.94
LSM4-206ENST00000600289 ANXA1P04083 346 aa20.92■□□□□ 0.94
LSM4-206ENST00000600289 NECTIN2Q92692 538 aa20.92■□□□□ 0.94
LSM4-206ENST00000600289 TSR2Q969E8 191 aaKnown RBP20.92■□□□□ 0.94
LSM4-206ENST00000600289 HYPKQ9NX55 129 aa20.92■□□□□ 0.94
LSM4-206ENST00000600289 FANCIQ9NVI1 1328 aa20.92■□□□□ 0.94
LSM4-206ENST00000600289 COPS6Q7L5N1 327 aa20.91■□□□□ 0.94
LSM4-206ENST00000600289 ZBTB3Q9H5J0 574 aa20.91■□□□□ 0.94
LSM4-206ENST00000600289 PRDM10Q9NQV6 1147 aa20.91■□□□□ 0.94
LSM4-206ENST00000600289 ST5P78524 1137 aa20.9■□□□□ 0.94
LSM4-206ENST00000600289 ZNF34Q8IZ26 560 aa20.9■□□□□ 0.94
LSM4-206ENST00000600289 XAGE3Q8WTP9 111 aa20.9■□□□□ 0.94
LSM4-206ENST00000600289 PIM2Q9P1W9 311 aa20.9■□□□□ 0.94
LSM4-206ENST00000600289 PDE6BP35913 854 aa20.89■□□□□ 0.93
LSM4-206ENST00000600289 TPTE2Q6XPS3 522 aa20.89■□□□□ 0.93
LSM4-206ENST00000600289 NBPF5PQ86XG9 351 aaPredicted RBP20.89■□□□□ 0.93
LSM4-206ENST00000600289 SALL2Q9Y467 1007 aaPredicted RBP20.89■□□□□ 0.93
LSM4-206ENST00000600289 LAMB2P55268 1798 aa20.89■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms