RNA–Protein interactions for RNA: ENST00000598553.1

VRK3-214, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 595 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-214ENST00000598553 ADAMTS8Q9UP79 889 aa14.1□□□□□ -0.15
VRK3-214ENST00000598553 TRIM35Q9UPQ4 493 aa14.1□□□□□ -0.15
VRK3-214ENST00000598553 ANXA1P04083 346 aa14.09□□□□□ -0.15
VRK3-214ENST00000598553 NEUROD2Q15784 382 aa14.09□□□□□ -0.15
VRK3-214ENST00000598553 PROSER3Q2NL68 480 aa14.09□□□□□ -0.15
VRK3-214ENST00000598553 LRP10Q7Z4F1 713 aa14.09□□□□□ -0.15
VRK3-214ENST00000598553 SLC51AQ86UW1 340 aa14.09□□□□□ -0.15
VRK3-214ENST00000598553 GPBP1L1Q9HC44 474 aaPredicted RBP14.09□□□□□ -0.15
VRK3-214ENST00000598553 NMRK2Q9NPI5 230 aa14.09□□□□□ -0.15
VRK3-214ENST00000598553 ABCC12Q96J65 1359 aa14.09□□□□□ -0.15
VRK3-214ENST00000598553 SENP3-EIF4A1A0A087X0R7 540 aa14.08□□□□□ -0.16
VRK3-214ENST00000598553 FAM177BA6PVY3 158 aa14.08□□□□□ -0.16
VRK3-214ENST00000598553 NFKBIEO00221 500 aa14.08□□□□□ -0.16
VRK3-214ENST00000598553 ZNF219Q9P2Y4 722 aaPredicted RBP14.08□□□□□ -0.16
VRK3-214ENST00000598553 NEFMP07197 916 aa14.07□□□□□ -0.16
VRK3-214ENST00000598553 MYL6BP14649 208 aa14.07□□□□□ -0.16
VRK3-214ENST00000598553 PDIA6Q15084 440 aa14.07□□□□□ -0.16
VRK3-214ENST00000598553 CNBD1Q8NA66 436 aa14.07□□□□□ -0.16
VRK3-214ENST00000598553 TSPYL4Q9UJ04 414 aa14.07□□□□□ -0.16
VRK3-214ENST00000598553 TAF1P21675 1872 aa14.06□□□□□ -0.16
VRK3-214ENST00000598553 NECTIN2Q92692 538 aa14.06□□□□□ -0.16
VRK3-214ENST00000598553 SETDB2Q96T68 719 aa14.06□□□□□ -0.16
VRK3-214ENST00000598553 RNF181Q9P0P0 153 aa14.06□□□□□ -0.16
VRK3-214ENST00000598553 UBN2Q6ZU65 1347 aa14.06□□□□□ -0.16
VRK3-214ENST00000598553 H0YIN7 160 aa14.05□□□□□ -0.16
VRK3-214ENST00000598553 OLFM4Q6UX06 510 aa14.05□□□□□ -0.16
VRK3-214ENST00000598553 TTLL6Q8N841 843 aa14.05□□□□□ -0.16
VRK3-214ENST00000598553 PNISRQ8TF01 805 aaKnown RBP14.05□□□□□ -0.16
VRK3-214ENST00000598553 ZNF622Q969S3 477 aaKnown RBP eCLIP14.05□□□□□ -0.16
VRK3-214ENST00000598553 BRIP1Q9BX63 1249 aa14.05□□□□□ -0.16
VRK3-214ENST00000598553 NIP7Q9Y221 180 aaKnown RBP eCLIP14.05□□□□□ -0.16
VRK3-214ENST00000598553 NUTM1Q86Y26 1132 aa14.04□□□□□ -0.16
VRK3-214ENST00000598553 RUNDC1Q96C34 613 aa14.04□□□□□ -0.16
VRK3-214ENST00000598553 ZBTB3Q9H5J0 574 aa14.04□□□□□ -0.16
VRK3-214ENST00000598553 MAP3K15Q6ZN16 1313 aa14.04□□□□□ -0.16
VRK3-214ENST00000598553 C21orf2O43822 256 aa14.03□□□□□ -0.16
VRK3-214ENST00000598553 SRGNP10124 158 aa14.03□□□□□ -0.16
VRK3-214ENST00000598553 EIF2S2P20042 333 aaKnown RBP14.03□□□□□ -0.16
VRK3-214ENST00000598553 GPTP24298 496 aa14.03□□□□□ -0.16
VRK3-214ENST00000598553 CLEC4GQ6UXB4 293 aa14.03□□□□□ -0.16
VRK3-214ENST00000598553 NBPF5PQ86XG9 351 aaPredicted RBP14.03□□□□□ -0.16
VRK3-214ENST00000598553 ZNF428Q96B54 188 aa14.03□□□□□ -0.16
VRK3-214ENST00000598553 PNNQ9H307 717 aaKnown RBP14.03□□□□□ -0.16
VRK3-214ENST00000598553 COL4A1P02462 1669 aa14.03□□□□□ -0.16
VRK3-214ENST00000598553 DDX60Q8IY21 1712 aaKnown RBP14.03□□□□□ -0.16
VRK3-214ENST00000598553 PDE6BP35913 854 aa14.02□□□□□ -0.17
VRK3-214ENST00000598553 WDR43Q15061 677 aaKnown RBP eCLIP14.02□□□□□ -0.17
VRK3-214ENST00000598553 C3orf67Q6ZVT6 689 aa14.02□□□□□ -0.17
VRK3-214ENST00000598553 NPM2Q86SE8 214 aaKnown RBP14.02□□□□□ -0.17
VRK3-214ENST00000598553 SNED1Q8TER0 1413 aa14.01□□□□□ -0.17
VRK3-214ENST00000598553 CHL1O00533 1208 aa14.01□□□□□ -0.17
VRK3-214ENST00000598553 ST5P78524 1137 aa14.01□□□□□ -0.17
VRK3-214ENST00000598553 PRPF40BQ6NWY9 871 aaKnown RBP14.01□□□□□ -0.17
VRK3-214ENST00000598553 LAS1LQ9Y4W2 734 aaKnown RBP14.01□□□□□ -0.17
VRK3-214ENST00000598553 COL4A5P29400 1685 aa14.01□□□□□ -0.17
VRK3-214ENST00000598553 APAF1O14727 1248 aa14□□□□□ -0.17
VRK3-214ENST00000598553 ERFEQ4G0M1 354 aa14□□□□□ -0.17
VRK3-214ENST00000598553 SUSD4Q5VX71 490 aa14□□□□□ -0.17
VRK3-214ENST00000598553 ZNF652Q9Y2D9 606 aa14□□□□□ -0.17
VRK3-214ENST00000598553 WDR90Q96KV7 1748 aa14□□□□□ -0.17
VRK3-214ENST00000598553 KLRG2A4D1S0 409 aaPredicted RBP13.99□□□□□ -0.17
VRK3-214ENST00000598553 NPHP1O15259 732 aa13.99□□□□□ -0.17
VRK3-214ENST00000598553 STYK1Q6J9G0 422 aa13.99□□□□□ -0.17
VRK3-214ENST00000598553 ZNF34Q8IZ26 560 aa13.99□□□□□ -0.17
VRK3-214ENST00000598553 C7orf43Q8WVR3 580 aa13.99□□□□□ -0.17
VRK3-214ENST00000598553 ERVV-1B6SEH8 477 aa13.98□□□□□ -0.17
VRK3-214ENST00000598553 NTSR2O95665 410 aa13.98□□□□□ -0.17
VRK3-214ENST00000598553 LMNB1P20700 586 aa13.98□□□□□ -0.17
VRK3-214ENST00000598553 LMOD3Q0VAK6 560 aa13.98□□□□□ -0.17
VRK3-214ENST00000598553 KIF6Q6ZMV9 814 aa13.98□□□□□ -0.17
VRK3-214ENST00000598553 SYNE4Q8N205 404 aa13.98□□□□□ -0.17
VRK3-214ENST00000598553 XAGE3Q8WTP9 111 aa13.98□□□□□ -0.17
VRK3-214ENST00000598553 MASTLQ96GX5 879 aa13.98□□□□□ -0.17
VRK3-214ENST00000598553 RRAGCQ9HB90 399 aa13.98□□□□□ -0.17
VRK3-214ENST00000598553 MBIPQ9NS73 344 aa13.98□□□□□ -0.17
VRK3-214ENST00000598553 ERBB4Q15303 1308 aa13.97□□□□□ -0.17
VRK3-214ENST00000598553 RGL2O15211 777 aa13.97□□□□□ -0.17
VRK3-214ENST00000598553 AIMP1Q12904 312 aaKnown RBP13.97□□□□□ -0.17
VRK3-214ENST00000598553 GIGYF2Q6Y7W6 1299 aaKnown RBP13.97□□□□□ -0.17
VRK3-214ENST00000598553 COPS6Q7L5N1 327 aa13.97□□□□□ -0.17
VRK3-214ENST00000598553 CHPF2Q9P2E5 772 aa13.97□□□□□ -0.17
VRK3-214ENST00000598553 POTECB2RU33 542 aa13.96□□□□□ -0.17
VRK3-214ENST00000598553 ZNF853P0CG23 659 aa13.96□□□□□ -0.17
VRK3-214ENST00000598553 TPTE2Q6XPS3 522 aa13.96□□□□□ -0.17
VRK3-214ENST00000598553 CNKSR1Q969H4 720 aa13.96□□□□□ -0.17
VRK3-214ENST00000598553 BABAM1Q9NWV8 329 aa13.96□□□□□ -0.17
VRK3-214ENST00000598553 RIC1Q4ADV7 1423 aa13.96□□□□□ -0.18
VRK3-214ENST00000598553 IBTKQ9P2D0 1353 aaPredicted RBP13.96□□□□□ -0.18
VRK3-214ENST00000598553 NPR1P16066 1061 aa13.95□□□□□ -0.18
VRK3-214ENST00000598553 HSPA6P17066 643 aa13.95□□□□□ -0.18
VRK3-214ENST00000598553 HTRA3P83110 453 aa13.95□□□□□ -0.18
VRK3-214ENST00000598553 CRY2Q49AN0 593 aa13.95□□□□□ -0.18
VRK3-214ENST00000598553 LTBP3Q9NS15 1303 aa13.94□□□□□ -0.18
VRK3-214ENST00000598553 LTBP1Q14766 1721 aa13.94□□□□□ -0.18
VRK3-214ENST00000598553 DUSP27Q5VZP5 1158 aa13.94□□□□□ -0.18
VRK3-214ENST00000598553 CFAP44Q96MT7 982 aa13.94□□□□□ -0.18
VRK3-214ENST00000598553 TAOK3Q9H2K8 898 aa13.94□□□□□ -0.18
VRK3-214ENST00000598553 PDZRN3Q9UPQ7 1066 aa13.94□□□□□ -0.18
VRK3-214ENST00000598553 ZNF316A6NFI3 1004 aaPredicted RBP13.93□□□□□ -0.18
VRK3-214ENST00000598553 ELL2O00472 640 aaPredicted RBP13.93□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms