RNA–Protein interactions for RNA: ENST00000596457.1

LIG1-211, Transcript of DNA ligase 1, humanhuman

TSL 5

Gene LIG1, Length 792 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-211ENST00000596457 PELP1Q8IZL8 1130 aaKnown RBP14.34□□□□□ -0.11
LIG1-211ENST00000596457 IL16Q14005 1332 aa14.34□□□□□ -0.11
LIG1-211ENST00000596457 TM4SF1P30408 202 aa14.33□□□□□ -0.12
LIG1-211ENST00000596457 DDR1Q08345 913 aa14.33□□□□□ -0.12
LIG1-211ENST00000596457 PDIA6Q15084 440 aa14.33□□□□□ -0.12
LIG1-211ENST00000596457 TSPYL6Q8N831 410 aa14.33□□□□□ -0.12
LIG1-211ENST00000596457 NLGN2Q8NFZ4 835 aa14.33□□□□□ -0.12
LIG1-211ENST00000596457 ZBTB3Q9H5J0 574 aa14.33□□□□□ -0.12
LIG1-211ENST00000596457 SPINK5Q9NQ38 1064 aaPredicted RBP14.33□□□□□ -0.12
LIG1-211ENST00000596457 CHPF2Q9P2E5 772 aa14.33□□□□□ -0.12
LIG1-211ENST00000596457 AFDNP55196 1824 aaKnown RBP14.33□□□□□ -0.12
LIG1-211ENST00000596457 ERBB4Q15303 1308 aa14.33□□□□□ -0.12
LIG1-211ENST00000596457 NUP98P52948 1817 aa14.32□□□□□ -0.12
LIG1-211ENST00000596457 FAM177BA6PVY3 158 aa14.32□□□□□ -0.12
LIG1-211ENST00000596457 POLRMTO00411 1230 aaKnown RBP14.32□□□□□ -0.12
LIG1-211ENST00000596457 TCERG1O14776 1098 aaKnown RBP14.32□□□□□ -0.12
LIG1-211ENST00000596457 NPHP1O15259 732 aa14.32□□□□□ -0.12
LIG1-211ENST00000596457 SERPINB2P05120 415 aa14.32□□□□□ -0.12
LIG1-211ENST00000596457 HOXB7P09629 217 aa14.32□□□□□ -0.12
LIG1-211ENST00000596457 HLFQ16534 295 aa14.32□□□□□ -0.12
LIG1-211ENST00000596457 WWC3Q9ULE0 1092 aa14.32□□□□□ -0.12
LIG1-211ENST00000596457 ZNF652Q9Y2D9 606 aa14.32□□□□□ -0.12
LIG1-211ENST00000596457 FANCIQ9NVI1 1328 aa14.32□□□□□ -0.12
LIG1-211ENST00000596457 EXOSC9Q06265 439 aaKnown RBP14.31□□□□□ -0.12
LIG1-211ENST00000596457 GOLGA2Q08379 1002 aa14.31□□□□□ -0.12
LIG1-211ENST00000596457 TWISTNBQ3B726 338 aaPredicted RBP14.31□□□□□ -0.12
LIG1-211ENST00000596457 COPS6Q7L5N1 327 aa14.31□□□□□ -0.12
LIG1-211ENST00000596457 XAGE3Q8WTP9 111 aa14.31□□□□□ -0.12
LIG1-211ENST00000596457 SETDB2Q96T68 719 aa14.31□□□□□ -0.12
LIG1-211ENST00000596457 MYH16Q9H6N6 1097 aa14.31□□□□□ -0.12
LIG1-211ENST00000596457 DDX21Q9NR30 783 aaKnown RBP eCLIP14.31□□□□□ -0.12
LIG1-211ENST00000596457 N4BP2Q86UW6 1770 aaPredicted RBP14.31□□□□□ -0.12
LIG1-211ENST00000596457 TNS4Q8IZW8 715 aa14.3□□□□□ -0.12
LIG1-211ENST00000596457 CCDC24Q8N4L8 307 aa14.3□□□□□ -0.12
LIG1-211ENST00000596457 DBF4Q9UBU7 674 aaPredicted RBP14.3□□□□□ -0.12
LIG1-211ENST00000596457 NIP7Q9Y221 180 aaKnown RBP eCLIP14.3□□□□□ -0.12
LIG1-211ENST00000596457 MAP3K15Q6ZN16 1313 aa14.3□□□□□ -0.12
LIG1-211ENST00000596457 GOLGB1Q14789 3259 aaKnown RBP14.29□□□□□ -0.12
LIG1-211ENST00000596457 TGFB2P61812 414 aa14.29□□□□□ -0.12
LIG1-211ENST00000596457 CCDC30Q5VVM6 783 aa14.29□□□□□ -0.12
LIG1-211ENST00000596457 A0A0G2JLW4 131 aa14.28□□□□□ -0.12
LIG1-211ENST00000596457 ERVV-1B6SEH8 477 aa14.28□□□□□ -0.12
LIG1-211ENST00000596457 GPTP24298 496 aa14.28□□□□□ -0.12
LIG1-211ENST00000596457 CLEC4GQ6UXB4 293 aa14.28□□□□□ -0.12
LIG1-211ENST00000596457 KIF13BQ9NQT8 1826 aa14.28□□□□□ -0.12
LIG1-211ENST00000596457 HYPKQ9NX55 129 aa14.28□□□□□ -0.12
LIG1-211ENST00000596457 ATP10DQ9P241 1426 aa14.27□□□□□ -0.12
LIG1-211ENST00000596457 CARMIL3Q8ND23 1372 aa14.27□□□□□ -0.12
LIG1-211ENST00000596457 ZNF521Q96K83 1311 aa14.27□□□□□ -0.12
LIG1-211ENST00000596457 HNRNPUQ00839 825 aaKnown RBP eCLIP14.27□□□□□ -0.13
LIG1-211ENST00000596457 LRP10Q7Z4F1 713 aa14.27□□□□□ -0.13
LIG1-211ENST00000596457 NBPF5PQ86XG9 351 aaPredicted RBP14.27□□□□□ -0.13
LIG1-211ENST00000596457 STK31Q9BXU1 1019 aa14.27□□□□□ -0.13
LIG1-211ENST00000596457 PHAXQ9H814 394 aaKnown RBP14.27□□□□□ -0.13
LIG1-211ENST00000596457 PCDH10Q9P2E7 1040 aa14.27□□□□□ -0.13
LIG1-211ENST00000596457 YBX3P16989 372 aaKnown RBP eCLIP14.26□□□□□ -0.13
LIG1-211ENST00000596457 GTF2E1P29083 439 aaPredicted RBP14.26□□□□□ -0.13
LIG1-211ENST00000596457 GIGYF2Q6Y7W6 1299 aaKnown RBP14.26□□□□□ -0.13
LIG1-211ENST00000596457 ZNF428Q96B54 188 aa14.26□□□□□ -0.13
LIG1-211ENST00000596457 CDCA7LQ96GN5 454 aa14.26□□□□□ -0.13
LIG1-211ENST00000596457 CHMP4AQ9BY43 222 aa14.26□□□□□ -0.13
LIG1-211ENST00000596457 NRXN2Q9P2S2 1712 aa14.26□□□□□ -0.13
LIG1-211ENST00000596457 C10orf71Q711Q0 1435 aa14.25□□□□□ -0.13
LIG1-211ENST00000596457 E9PSI1 815 aa14.25□□□□□ -0.13
LIG1-211ENST00000596457 VAMP4O75379 141 aa14.25□□□□□ -0.13
LIG1-211ENST00000596457 DPEP1P16444 411 aa14.25□□□□□ -0.13
LIG1-211ENST00000596457 ANKRD13DQ6ZTN6 518 aa14.25□□□□□ -0.13
LIG1-211ENST00000596457 RIC3Q7Z5B4 369 aa14.25□□□□□ -0.13
LIG1-211ENST00000596457 CNBD1Q8NA66 436 aa14.25□□□□□ -0.13
LIG1-211ENST00000596457 GPBP1L1Q9HC44 474 aaPredicted RBP14.25□□□□□ -0.13
LIG1-211ENST00000596457 SLC4A2P04920 1241 aa14.24□□□□□ -0.13
LIG1-211ENST00000596457 CHRNA5P30532 468 aa14.24□□□□□ -0.13
LIG1-211ENST00000596457 ST5P78524 1137 aa14.24□□□□□ -0.13
LIG1-211ENST00000596457 SLFN5Q08AF3 891 aa14.24□□□□□ -0.13
LIG1-211ENST00000596457 PRR5LQ6MZQ0 368 aa14.24□□□□□ -0.13
LIG1-211ENST00000596457 ANKRD36CQ5JPF3 1778 aa14.24□□□□□ -0.13
LIG1-211ENST00000596457 KIAA1551Q9HCM1 1747 aa14.24□□□□□ -0.13
LIG1-211ENST00000596457 TPTE2Q6XPS3 522 aa14.23□□□□□ -0.13
LIG1-211ENST00000596457 C2CD5Q86YS7 1000 aa14.23□□□□□ -0.13
LIG1-211ENST00000596457 PLBD2Q8NHP8 589 aa14.23□□□□□ -0.13
LIG1-211ENST00000596457 ANKRD31Q8N7Z5 1873 aa14.23□□□□□ -0.13
LIG1-211ENST00000596457 ARFGEF2Q9Y6D5 1785 aa14.22□□□□□ -0.13
LIG1-211ENST00000596457 SUSD4Q5VX71 490 aa14.22□□□□□ -0.13
LIG1-211ENST00000596457 G2E3Q7L622 706 aa14.22□□□□□ -0.13
LIG1-211ENST00000596457 NUTM1Q86Y26 1132 aa14.22□□□□□ -0.13
LIG1-211ENST00000596457 ZNF34Q8IZ26 560 aa14.22□□□□□ -0.13
LIG1-211ENST00000596457 ZNF526Q8TF50 670 aaPredicted RBP14.22□□□□□ -0.13
LIG1-211ENST00000596457 BCS1LQ9Y276 419 aa14.22□□□□□ -0.13
LIG1-211ENST00000596457 PXDNLA1KZ92 1463 aa14.22□□□□□ -0.13
LIG1-211ENST00000596457 UBN2Q6ZU65 1347 aa14.21□□□□□ -0.13
LIG1-211ENST00000596457 ATP5J2-PTCD1G3V325 749 aa14.21□□□□□ -0.13
LIG1-211ENST00000596457 H0YIN7 160 aa14.21□□□□□ -0.13
LIG1-211ENST00000596457 RGL2O15211 777 aa14.21□□□□□ -0.13
LIG1-211ENST00000596457 DDX58O95786 925 aaKnown RBP14.21□□□□□ -0.13
LIG1-211ENST00000596457 TCIRG1Q13488 830 aa14.21□□□□□ -0.13
LIG1-211ENST00000596457 HSP90AB3PQ58FF7 597 aa14.21□□□□□ -0.13
LIG1-211ENST00000596457 PPP1R42Q7Z4L9 355 aa14.21□□□□□ -0.13
LIG1-211ENST00000596457 ZNF622Q969S3 477 aaKnown RBP eCLIP14.21□□□□□ -0.134e-8■■□□□ 14.1
LIG1-211ENST00000596457 MYD88Q99836 296 aa14.21□□□□□ -0.13
LIG1-211ENST00000596457 NYXQ9GZU5 481 aa14.21□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms