RNA–Protein interactions for RNA: ENST00000594862.1

SHKBP1-204, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 623 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-204ENST00000594862 BRIP1Q9BX63 1249 aa23.14■■□□□ 1.29
SHKBP1-204ENST00000594862 H0YIN7 160 aa23.13■■□□□ 1.29
SHKBP1-204ENST00000594862 APAF1O14727 1248 aa23.13■■□□□ 1.29
SHKBP1-204ENST00000594862 HOXB7P09629 217 aa23.13■■□□□ 1.29
SHKBP1-204ENST00000594862 CHRNA5P30532 468 aa23.13■■□□□ 1.29
SHKBP1-204ENST00000594862 PRR5LQ6MZQ0 368 aa23.13■■□□□ 1.29
SHKBP1-204ENST00000594862 CFAP44Q96MT7 982 aa23.13■■□□□ 1.29
SHKBP1-204ENST00000594862 MRS2Q9HD23 443 aa23.12■■□□□ 1.29
SHKBP1-204ENST00000594862 MAP3K15Q6ZN16 1313 aa23.11■■□□□ 1.29
SHKBP1-204ENST00000594862 ANKRD31Q8N7Z5 1873 aa23.11■■□□□ 1.29
SHKBP1-204ENST00000594862 NBPF5PQ86XG9 351 aaPredicted RBP23.11■■□□□ 1.29
SHKBP1-204ENST00000594862 C2CD5Q86YS7 1000 aa23.11■■□□□ 1.29
SHKBP1-204ENST00000594862 LAS1LQ9Y4W2 734 aaKnown RBP23.11■■□□□ 1.29
SHKBP1-204ENST00000594862 ADCY9O60503 1353 aa23.11■■□□□ 1.29
SHKBP1-204ENST00000594862 ATP10DQ9P241 1426 aa23.1■■□□□ 1.29
SHKBP1-204ENST00000594862 MYL6BP14649 208 aa23.1■■□□□ 1.29
SHKBP1-204ENST00000594862 NIP7Q9Y221 180 aaKnown RBP eCLIP23.1■■□□□ 1.29
SHKBP1-204ENST00000594862 GNAI1P63096 354 aa23.09■■□□□ 1.29
SHKBP1-204ENST00000594862 TPTE2Q6XPS3 522 aa23.09■■□□□ 1.29
SHKBP1-204ENST00000594862 ARHGAP27Q6ZUM4 889 aa23.09■■□□□ 1.29
SHKBP1-204ENST00000594862 IFT57Q9NWB7 429 aa23.09■■□□□ 1.29
SHKBP1-204ENST00000594862 EIF2S2P20042 333 aaKnown RBP23.08■■□□□ 1.29
SHKBP1-204ENST00000594862 TTLL6Q8N841 843 aa23.08■■□□□ 1.29
SHKBP1-204ENST00000594862 NUP98P52948 1817 aa23.08■■□□□ 1.28
SHKBP1-204ENST00000594862 IBTKQ9P2D0 1353 aaPredicted RBP23.07■■□□□ 1.28
SHKBP1-204ENST00000594862 NCBP3Q53F19 620 aaKnown RBP23.07■■□□□ 1.28
SHKBP1-204ENST00000594862 NGEFQ8N5V2 710 aa23.07■■□□□ 1.28
SHKBP1-204ENST00000594862 NYXQ9GZU5 481 aa23.07■■□□□ 1.28
SHKBP1-204ENST00000594862 COL11A2P13942 1736 aaPredicted RBP23.06■■□□□ 1.28
SHKBP1-204ENST00000594862 CCDC184Q52MB2 194 aa23.06■■□□□ 1.28
SHKBP1-204ENST00000594862 CHMP4AQ9BY43 222 aa23.06■■□□□ 1.28
SHKBP1-204ENST00000594862 CCDC27Q2M243 656 aa23.05■■□□□ 1.28
SHKBP1-204ENST00000594862 ZNF853P0CG23 659 aa23.04■■□□□ 1.28
SHKBP1-204ENST00000594862 HLFQ16534 295 aa23.04■■□□□ 1.28
SHKBP1-204ENST00000594862 HDGFL1Q5TGJ6 251 aa23.04■■□□□ 1.28
SHKBP1-204ENST00000594862 TTLL7Q6ZT98 887 aa23.04■■□□□ 1.28
SHKBP1-204ENST00000594862 DDX21Q9NR30 783 aaKnown RBP eCLIP23.04■■□□□ 1.28
SHKBP1-204ENST00000594862 MBIPQ9NS73 344 aa23.04■■□□□ 1.28
SHKBP1-204ENST00000594862 GTF2E1P29083 439 aaPredicted RBP23.03■■□□□ 1.28
SHKBP1-204ENST00000594862 PDIA6Q15084 440 aa23.03■■□□□ 1.28
SHKBP1-204ENST00000594862 STYK1Q6J9G0 422 aa23.03■■□□□ 1.28
SHKBP1-204ENST00000594862 GIGYF2Q6Y7W6 1299 aaKnown RBP23.03■■□□□ 1.28
SHKBP1-204ENST00000594862 CNKSR1Q969H4 720 aa23.03■■□□□ 1.28
SHKBP1-204ENST00000594862 ZBTB3Q9H5J0 574 aa23.03■■□□□ 1.28
SHKBP1-204ENST00000594862 ARFGEF2Q9Y6D5 1785 aa23.03■■□□□ 1.28
SHKBP1-204ENST00000594862 RIC1Q4ADV7 1423 aa23.02■■□□□ 1.28
SHKBP1-204ENST00000594862 HSP90AB3PQ58FF7 597 aa23.02■■□□□ 1.28
SHKBP1-204ENST00000594862 LRP10Q7Z4F1 713 aa23.02■■□□□ 1.28
SHKBP1-204ENST00000594862 DBF4Q9UBU7 674 aaPredicted RBP23.02■■□□□ 1.28
SHKBP1-204ENST00000594862 PARP10Q53GL7 1025 aa23.01■■□□□ 1.27
SHKBP1-204ENST00000594862 ZNF622Q969S3 477 aaKnown RBP eCLIP23.01■■□□□ 1.27
SHKBP1-204ENST00000594862 MASTLQ96GX5 879 aa23.01■■□□□ 1.27
SHKBP1-204ENST00000594862 GPBP1L1Q9HC44 474 aaPredicted RBP23.01■■□□□ 1.27
SHKBP1-204ENST00000594862 ANKRD36CQ5JPF3 1778 aa23.01■■□□□ 1.27
SHKBP1-204ENST00000594862 SRGNP10124 158 aa23■■□□□ 1.27
SHKBP1-204ENST00000594862 SOGA3Q5TF21 947 aa23■■□□□ 1.27
SHKBP1-204ENST00000594862 DUSP27Q5VZP5 1158 aa23■■□□□ 1.27
SHKBP1-204ENST00000594862 KLRG2A4D1S0 409 aaPredicted RBP22.99■■□□□ 1.27
SHKBP1-204ENST00000594862 KRT24Q2M2I5 525 aa22.99■■□□□ 1.27
SHKBP1-204ENST00000594862 PROSER3Q2NL68 480 aa22.99■■□□□ 1.27
SHKBP1-204ENST00000594862 ZNF34Q8IZ26 560 aa22.99■■□□□ 1.27
SHKBP1-204ENST00000594862 CCDC24Q8N4L8 307 aa22.99■■□□□ 1.27
SHKBP1-204ENST00000594862 RNF123Q5XPI4 1314 aa22.99■■□□□ 1.27
SHKBP1-204ENST00000594862 NPR1P16066 1061 aa22.98■■□□□ 1.27
SHKBP1-204ENST00000594862 PPP1R42Q7Z4L9 355 aa22.98■■□□□ 1.27
SHKBP1-204ENST00000594862 NECTIN2Q92692 538 aa22.98■■□□□ 1.27
SHKBP1-204ENST00000594862 HYPKQ9NX55 129 aa22.98■■□□□ 1.27
SHKBP1-204ENST00000594862 ZC3H4Q9UPT8 1303 aaKnown RBP22.98■■□□□ 1.27
SHKBP1-204ENST00000594862 COPS6Q7L5N1 327 aa22.97■■□□□ 1.27
SHKBP1-204ENST00000594862 XAGE3Q8WTP9 111 aa22.97■■□□□ 1.27
SHKBP1-204ENST00000594862 CHPF2Q9P2E5 772 aa22.97■■□□□ 1.27
SHKBP1-204ENST00000594862 IL16Q14005 1332 aa22.97■■□□□ 1.27
SHKBP1-204ENST00000594862 FAM177BA6PVY3 158 aa22.96■■□□□ 1.27
SHKBP1-204ENST00000594862 C9orf131Q5VYM1 1079 aa22.96■■□□□ 1.27
SHKBP1-204ENST00000594862 ANXA1P04083 346 aa22.95■■□□□ 1.26
SHKBP1-204ENST00000594862 GPTP24298 496 aa22.95■■□□□ 1.26
SHKBP1-204ENST00000594862 UBN2Q6ZU65 1347 aa22.95■■□□□ 1.26
SHKBP1-204ENST00000594862 WWC1Q8IX03 1113 aa22.95■■□□□ 1.26
SHKBP1-204ENST00000594862 ZNF526Q8TF50 670 aaPredicted RBP22.95■■□□□ 1.26
SHKBP1-204ENST00000594862 SBF1O95248 1867 aa22.94■■□□□ 1.26
SHKBP1-204ENST00000594862 LMNB1P20700 586 aa22.94■■□□□ 1.26
SHKBP1-204ENST00000594862 AIMP1Q12904 312 aaKnown RBP22.94■■□□□ 1.26
SHKBP1-204ENST00000594862 PRPF40BQ6NWY9 871 aaKnown RBP22.94■■□□□ 1.26
SHKBP1-204ENST00000594862 RNF181Q9P0P0 153 aa22.94■■□□□ 1.26
SHKBP1-204ENST00000594862 CACNA1SQ13698 1873 aa22.94■■□□□ 1.26
SHKBP1-204ENST00000594862 TNRC6CQ9HCJ0 1690 aaKnown RBP22.93■■□□□ 1.26
SHKBP1-204ENST00000594862 ABCC12Q96J65 1359 aa22.93■■□□□ 1.26
SHKBP1-204ENST00000594862 ALDH1B1P30837 517 aa22.93■■□□□ 1.26
SHKBP1-204ENST00000594862 PLBD2Q8NHP8 589 aa22.93■■□□□ 1.26
SHKBP1-204ENST00000594862 LTBP3Q9NS15 1303 aa22.92■■□□□ 1.26
SHKBP1-204ENST00000594862 NTSR2O95665 410 aa22.92■■□□□ 1.26
SHKBP1-204ENST00000594862 CRY2Q49AN0 593 aa22.92■■□□□ 1.26
SHKBP1-204ENST00000594862 SUSD4Q5VX71 490 aa22.92■■□□□ 1.26
SHKBP1-204ENST00000594862 UTP14AQ9BVJ6 771 aaKnown RBP22.92■■□□□ 1.26
SHKBP1-204ENST00000594862 FER1L6Q2WGJ9 1857 aa22.92■■□□□ 1.26
SHKBP1-204ENST00000594862 C21orf2O43822 256 aa22.91■■□□□ 1.26
SHKBP1-204ENST00000594862 TCIRG1Q13488 830 aa22.91■■□□□ 1.26
SHKBP1-204ENST00000594862 ERFEQ4G0M1 354 aa22.91■■□□□ 1.26
SHKBP1-204ENST00000594862 NUTM1Q86Y26 1132 aa22.91■■□□□ 1.26
SHKBP1-204ENST00000594862 SLX4Q8IY92 1834 aa22.91■■□□□ 1.26
Retrieved 100 of 20,778 RNA–protein pairs in 49.2 ms