RNA–Protein interactions for RNA: ENST00000594243.1

UPF1-202, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 683 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-202ENST00000594243 MAP3K15Q6ZN16 1313 aa19.42■□□□□ 0.7
UPF1-202ENST00000594243 SCN7AQ01118 1682 aa19.41■□□□□ 0.7
UPF1-202ENST00000594243 LRP10Q7Z4F1 713 aa19.41■□□□□ 0.7
UPF1-202ENST00000594243 MYH16Q9H6N6 1097 aa19.41■□□□□ 0.7
UPF1-202ENST00000594243 HYPKQ9NX55 129 aa19.41■□□□□ 0.7
UPF1-202ENST00000594243 CHPF2Q9P2E5 772 aa19.41■□□□□ 0.7
UPF1-202ENST00000594243 CARMIL3Q8ND23 1372 aa19.41■□□□□ 0.7
UPF1-202ENST00000594243 ANXA1P04083 346 aa19.4■□□□□ 0.7
UPF1-202ENST00000594243 HLFQ16534 295 aa19.4■□□□□ 0.7
UPF1-202ENST00000594243 PROSER3Q2NL68 480 aa19.4■□□□□ 0.7
UPF1-202ENST00000594243 CCDC30Q5VVM6 783 aa19.4■□□□□ 0.7
UPF1-202ENST00000594243 COPS6Q7L5N1 327 aa19.4■□□□□ 0.7
UPF1-202ENST00000594243 AIMP1Q12904 312 aaKnown RBP19.39■□□□□ 0.69
UPF1-202ENST00000594243 GPR162Q16538 588 aa19.39■□□□□ 0.69
UPF1-202ENST00000594243 TWISTNBQ3B726 338 aaPredicted RBP19.39■□□□□ 0.69
UPF1-202ENST00000594243 ZBTB3Q9H5J0 574 aa19.39■□□□□ 0.69
UPF1-202ENST00000594243 NIP7Q9Y221 180 aaKnown RBP eCLIP19.39■□□□□ 0.69
UPF1-202ENST00000594243 ZNF521Q96K83 1311 aa19.39■□□□□ 0.69
UPF1-202ENST00000594243 FANCIQ9NVI1 1328 aa19.39■□□□□ 0.69
UPF1-202ENST00000594243 C10orf71Q711Q0 1435 aa19.39■□□□□ 0.69
UPF1-202ENST00000594243 BCORQ6W2J9 1755 aa19.39■□□□□ 0.69
UPF1-202ENST00000594243 NPHP1O15259 732 aa19.38■□□□□ 0.69
UPF1-202ENST00000594243 GIGYF2Q6Y7W6 1299 aaKnown RBP19.38■□□□□ 0.69
UPF1-202ENST00000594243 TSPYL6Q8N831 410 aa19.38■□□□□ 0.69
UPF1-202ENST00000594243 XAGE3Q8WTP9 111 aa19.38■□□□□ 0.69
UPF1-202ENST00000594243 SPINK5Q9NQ38 1064 aaPredicted RBP19.37■□□□□ 0.69
UPF1-202ENST00000594243 CHD4Q14839 1912 aa19.36■□□□□ 0.69
UPF1-202ENST00000594243 TPTE2Q6XPS3 522 aa19.36■□□□□ 0.69
UPF1-202ENST00000594243 NBPF5PQ86XG9 351 aaPredicted RBP19.36■□□□□ 0.69
UPF1-202ENST00000594243 PELP1Q8IZL8 1130 aaKnown RBP19.36■□□□□ 0.69
UPF1-202ENST00000594243 A0A0G2JLW4 131 aa19.35■□□□□ 0.69
UPF1-202ENST00000594243 YY1P25490 414 aa19.35■□□□□ 0.69
UPF1-202ENST00000594243 ST5P78524 1137 aa19.35■□□□□ 0.69
UPF1-202ENST00000594243 EXOSC9Q06265 439 aaKnown RBP19.35■□□□□ 0.69
UPF1-202ENST00000594243 HSP90AB3PQ58FF7 597 aa19.35■□□□□ 0.69
UPF1-202ENST00000594243 ANKRD13DQ6ZTN6 518 aa19.35■□□□□ 0.69
UPF1-202ENST00000594243 CNBD1Q8NA66 436 aa19.35■□□□□ 0.69
UPF1-202ENST00000594243 STK31Q9BXU1 1019 aa19.35■□□□□ 0.69
UPF1-202ENST00000594243 KIF13BQ9NQT8 1826 aa19.35■□□□□ 0.69
UPF1-202ENST00000594243 NRXN2Q9P2S2 1712 aa19.34■□□□□ 0.69
UPF1-202ENST00000594243 E9PSI1 815 aa19.34■□□□□ 0.69
UPF1-202ENST00000594243 DPEP1P16444 411 aa19.34■□□□□ 0.69
UPF1-202ENST00000594243 PRR5LQ6MZQ0 368 aa19.34■□□□□ 0.69
UPF1-202ENST00000594243 BRIP1Q9BX63 1249 aa19.34■□□□□ 0.69
UPF1-202ENST00000594243 UTRNP46939 3433 aa19.33■□□□□ 0.69
UPF1-202ENST00000594243 VAMP4O75379 141 aa19.33■□□□□ 0.68
UPF1-202ENST00000594243 GTF2E1P29083 439 aaPredicted RBP19.33■□□□□ 0.68
UPF1-202ENST00000594243 PDE6BP35913 854 aa19.33■□□□□ 0.68
UPF1-202ENST00000594243 ZNF34Q8IZ26 560 aa19.33■□□□□ 0.68
UPF1-202ENST00000594243 PLBD2Q8NHP8 589 aa19.33■□□□□ 0.68
UPF1-202ENST00000594243 NYXQ9GZU5 481 aa19.33■□□□□ 0.68
UPF1-202ENST00000594243 PDZRN3Q9UPQ7 1066 aa19.33■□□□□ 0.68
UPF1-202ENST00000594243 PXDNLA1KZ92 1463 aa19.33■□□□□ 0.68
UPF1-202ENST00000594243 ATP10DQ9P241 1426 aa19.33■□□□□ 0.68
UPF1-202ENST00000594243 AFDNP55196 1824 aaKnown RBP19.32■□□□□ 0.68
UPF1-202ENST00000594243 GRIN3BO60391 1043 aa19.32■□□□□ 0.68
UPF1-202ENST00000594243 PARP10Q53GL7 1025 aa19.32■□□□□ 0.68
UPF1-202ENST00000594243 PIM2Q9P1W9 311 aa19.32■□□□□ 0.68
UPF1-202ENST00000594243 FAM177BA6PVY3 158 aa19.31■□□□□ 0.68
UPF1-202ENST00000594243 H0YIN7 160 aa19.31■□□□□ 0.68
UPF1-202ENST00000594243 DDX58O95786 925 aaKnown RBP19.31■□□□□ 0.68
UPF1-202ENST00000594243 KCNA3P22001 575 aa19.31■□□□□ 0.68
UPF1-202ENST00000594243 GPTP24298 496 aa19.31■□□□□ 0.68
UPF1-202ENST00000594243 TCIRG1Q13488 830 aa19.31■□□□□ 0.68
UPF1-202ENST00000594243 PPP1R42Q7Z4L9 355 aa19.31■□□□□ 0.68
UPF1-202ENST00000594243 PHAXQ9H814 394 aaKnown RBP19.31■□□□□ 0.68
UPF1-202ENST00000594243 SLFN5Q08AF3 891 aa19.3■□□□□ 0.68
UPF1-202ENST00000594243 RIC3Q7Z5B4 369 aa19.3■□□□□ 0.68
UPF1-202ENST00000594243 CCDC24Q8N4L8 307 aa19.3■□□□□ 0.68
UPF1-202ENST00000594243 NUP98P52948 1817 aa19.3■□□□□ 0.68
UPF1-202ENST00000594243 SLC4A2P04920 1241 aa19.29■□□□□ 0.68
UPF1-202ENST00000594243 YBX3P16989 372 aaKnown RBP eCLIP19.29■□□□□ 0.681e-11■■□□□ 12.2
UPF1-202ENST00000594243 CHRNA5P30532 468 aa19.29■□□□□ 0.68
UPF1-202ENST00000594243 C2CD5Q86YS7 1000 aa19.29■□□□□ 0.68
UPF1-202ENST00000594243 UBN2Q6ZU65 1347 aa19.28■□□□□ 0.68
UPF1-202ENST00000594243 TCERG1O14776 1098 aaKnown RBP19.28■□□□□ 0.68
UPF1-202ENST00000594243 SUSD4Q5VX71 490 aa19.28■□□□□ 0.68
UPF1-202ENST00000594243 WWC3Q9ULE0 1092 aa19.28■□□□□ 0.68
UPF1-202ENST00000594243 BCS1LQ9Y276 419 aa19.28■□□□□ 0.68
UPF1-202ENST00000594243 N4BP2Q86UW6 1770 aaPredicted RBP19.27■□□□□ 0.68
UPF1-202ENST00000594243 DALRD3Q5D0E6 543 aaKnown RBP19.27■□□□□ 0.68
UPF1-202ENST00000594243 UTP14AQ9BVJ6 771 aaKnown RBP19.27■□□□□ 0.68
UPF1-202ENST00000594243 KIAA1551Q9HCM1 1747 aa19.27■□□□□ 0.68
UPF1-202ENST00000594243 IBTKQ9P2D0 1353 aaPredicted RBP19.27■□□□□ 0.68
UPF1-202ENST00000594243 CDCA7LQ96GN5 454 aa19.26■□□□□ 0.67
UPF1-202ENST00000594243 NLRP10Q86W26 655 aa19.25■□□□□ 0.67
UPF1-202ENST00000594243 NUTM1Q86Y26 1132 aa19.25■□□□□ 0.67
UPF1-202ENST00000594243 TRMT2AQ8IZ69 625 aaKnown RBP19.25■□□□□ 0.67
UPF1-202ENST00000594243 RNF123Q5XPI4 1314 aa19.25■□□□□ 0.67
UPF1-202ENST00000594243 KLRG2A4D1S0 409 aaPredicted RBP19.24■□□□□ 0.67
UPF1-202ENST00000594243 NTSR2O95665 410 aa19.24■□□□□ 0.67
UPF1-202ENST00000594243 HNRNPUQ00839 825 aaKnown RBP eCLIP19.24■□□□□ 0.67
UPF1-202ENST00000594243 TRIM28Q13263 835 aaKnown RBP19.24■□□□□ 0.67
UPF1-202ENST00000594243 ERFEQ4G0M1 354 aa19.24■□□□□ 0.67
UPF1-202ENST00000594243 KSR2Q6VAB6 950 aa19.24■□□□□ 0.67
UPF1-202ENST00000594243 TTLL6Q8N841 843 aa19.24■□□□□ 0.67
UPF1-202ENST00000594243 ZNF622Q969S3 477 aaKnown RBP eCLIP19.24■□□□□ 0.67
UPF1-202ENST00000594243 ISCA1Q9BUE6 129 aa19.24■□□□□ 0.67
UPF1-202ENST00000594243 SRGNP10124 158 aa19.23■□□□□ 0.67
UPF1-202ENST00000594243 MASTLQ96GX5 879 aa19.23■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms