RNA–Protein interactions for RNA: ENST00000594104.1

VRK3-208, Transcript of vaccinia related kinase 3, humanhuman

Gene VRK3, Length 2,197 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-208ENST00000594104 ERBB3P21860 1342 aa14.19□□□□□ -0.14
VRK3-208ENST00000594104 KCNQ3O43525 872 aa14.19□□□□□ -0.14
VRK3-208ENST00000594104 DDX21Q9NR30 783 aaKnown RBP eCLIP14.19□□□□□ -0.14
VRK3-208ENST00000594104 SPG7Q9UQ90 795 aa14.19□□□□□ -0.14
VRK3-208ENST00000594104 UTYO14607 1347 aa14.19□□□□□ -0.14
VRK3-208ENST00000594104 TTC41PQ6P2S7 1318 aa14.19□□□□□ -0.14
VRK3-208ENST00000594104 SRGAP3O43295 1099 aa14.19□□□□□ -0.14
VRK3-208ENST00000594104 RAPGEF4Q8WZA2 1011 aa14.19□□□□□ -0.14
VRK3-208ENST00000594104 MRE11P49959 708 aa14.18□□□□□ -0.14
VRK3-208ENST00000594104 DCAF8Q5TAQ9 597 aa14.18□□□□□ -0.14
VRK3-208ENST00000594104 ALS2Q96Q42 1657 aa14.18□□□□□ -0.14
VRK3-208ENST00000594104 TRIM6-TRIM34B2RNG4 842 aa14.17□□□□□ -0.14
VRK3-208ENST00000594104 CYP2E1P05181 493 aaPredicted RBP14.17□□□□□ -0.14
VRK3-208ENST00000594104 LINS1Q8NG48 757 aa14.17□□□□□ -0.14
VRK3-208ENST00000594104 AXIN2Q9Y2T1 843 aa14.17□□□□□ -0.14
VRK3-208ENST00000594104 NBPF7P0C2Y1 421 aaPredicted RBP14.17□□□□□ -0.14
VRK3-208ENST00000594104 TATP17735 454 aaPredicted RBP14.17□□□□□ -0.14
VRK3-208ENST00000594104 BRPF3Q9ULD4 1205 aa14.17□□□□□ -0.14
VRK3-208ENST00000594104 PXDNQ92626 1479 aa14.17□□□□□ -0.14
VRK3-208ENST00000594104 TUBGCP6Q96RT7 1819 aa14.17□□□□□ -0.14
VRK3-208ENST00000594104 RILPL2Q969X0 211 aa14.16□□□□□ -0.14
VRK3-208ENST00000594104 INTS4Q96HW7 963 aaKnown RBP14.16□□□□□ -0.14
VRK3-208ENST00000594104 NPHP3Q7Z494 1330 aa14.16□□□□□ -0.14
VRK3-208ENST00000594104 GLRX3O76003 335 aaKnown RBP14.16□□□□□ -0.14
VRK3-208ENST00000594104 XPCQ01831 940 aaPredicted RBP14.16□□□□□ -0.14
VRK3-208ENST00000594104 CNTROBQ8N137 903 aa14.16□□□□□ -0.14
VRK3-208ENST00000594104 GPATCH3Q96I76 525 aa14.16□□□□□ -0.14
VRK3-208ENST00000594104 C9orf78Q9NZ63 289 aaPredicted RBP14.16□□□□□ -0.14
VRK3-208ENST00000594104 MAP3K2Q9Y2U5 619 aa14.16□□□□□ -0.14
VRK3-208ENST00000594104 RGPD2P0DJD1 1756 aa14.16□□□□□ -0.14
VRK3-208ENST00000594104 BAG4O95429 457 aaKnown RBP14.15□□□□□ -0.14
VRK3-208ENST00000594104 CUL4AQ13619 759 aa14.15□□□□□ -0.14
VRK3-208ENST00000594104 PI4K2BQ8TCG2 481 aa14.15□□□□□ -0.14
VRK3-208ENST00000594104 SLC52A2Q9HAB3 445 aa14.15□□□□□ -0.14
VRK3-208ENST00000594104 SIPA1L3O60292 1781 aaPredicted RBP14.15□□□□□ -0.14
VRK3-208ENST00000594104 SSFA2P28290 1259 aa14.15□□□□□ -0.15
VRK3-208ENST00000594104 LARP1Q6PKG0 1096 aaKnown RBP14.15□□□□□ -0.15
VRK3-208ENST00000594104 CLASRPQ8N2M8 674 aaKnown RBP14.15□□□□□ -0.15
VRK3-208ENST00000594104 TRAIPQ9BWF2 469 aa14.15□□□□□ -0.15
VRK3-208ENST00000594104 NEK4P51957 841 aa14.14□□□□□ -0.15
VRK3-208ENST00000594104 NUBP1P53384 320 aa14.14□□□□□ -0.15
VRK3-208ENST00000594104 E2F4Q16254 413 aa14.14□□□□□ -0.15
VRK3-208ENST00000594104 ZNF790Q6PG37 636 aa14.14□□□□□ -0.15
VRK3-208ENST00000594104 IFNL2Q8IZJ0 200 aa14.14□□□□□ -0.15
VRK3-208ENST00000594104 RUFY2Q8WXA3 655 aa14.14□□□□□ -0.15
VRK3-208ENST00000594104 PHKG2P15735 406 aa14.13□□□□□ -0.15
VRK3-208ENST00000594104 KLHL40Q2TBA0 621 aa14.13□□□□□ -0.15
VRK3-208ENST00000594104 SGIP1Q9BQI5 828 aa14.13□□□□□ -0.15
VRK3-208ENST00000594104 IL1RAPL2Q9NP60 686 aa14.13□□□□□ -0.15
VRK3-208ENST00000594104 ANO2Q9NQ90 1003 aa14.13□□□□□ -0.15
VRK3-208ENST00000594104 ZBTB12Q9Y330 459 aaPredicted RBP14.13□□□□□ -0.15
VRK3-208ENST00000594104 CPDO75976 1380 aa14.13□□□□□ -0.15
VRK3-208ENST00000594104 GRM8O00222 908 aa14.13□□□□□ -0.15
VRK3-208ENST00000594104 HSPA4P34932 840 aa14.13□□□□□ -0.15
VRK3-208ENST00000594104 FAM43AQ8N2R8 423 aa14.13□□□□□ -0.15
VRK3-208ENST00000594104 DCAF5Q96JK2 942 aa14.13□□□□□ -0.15
VRK3-208ENST00000594104 TMEM94Q12767 1356 aa14.13□□□□□ -0.15
VRK3-208ENST00000594104 SGSM2O43147 1006 aa14.12□□□□□ -0.15
VRK3-208ENST00000594104 XRCC6P12956 609 aaKnown RBP eCLIP14.12□□□□□ -0.15
VRK3-208ENST00000594104 NUTM1Q86Y26 1132 aa14.12□□□□□ -0.15
VRK3-208ENST00000594104 NLRP2Q9NX02 1062 aa14.12□□□□□ -0.15
VRK3-208ENST00000594104 NEXNQ0ZGT2 675 aa14.12□□□□□ -0.15
VRK3-208ENST00000594104 OS9Q13438 667 aaPredicted RBP14.12□□□□□ -0.15
VRK3-208ENST00000594104 PDIA6Q15084 440 aa14.12□□□□□ -0.15
VRK3-208ENST00000594104 FOXD4L5Q5VV16 416 aaPredicted RBP14.12□□□□□ -0.15
VRK3-208ENST00000594104 TSHZ3Q63HK5 1081 aa14.12□□□□□ -0.15
VRK3-208ENST00000594104 FOXD4L4Q8WXT5 416 aaPredicted RBP14.12□□□□□ -0.15
VRK3-208ENST00000594104 TMX3Q96JJ7 454 aa14.12□□□□□ -0.15
VRK3-208ENST00000594104 ECHDC1Q9NTX5 307 aa14.12□□□□□ -0.15
VRK3-208ENST00000594104 SSUH2Q9Y2M2 353 aa14.12□□□□□ -0.15
VRK3-208ENST00000594104 TNS3Q68CZ2 1445 aa14.11□□□□□ -0.15
VRK3-208ENST00000594104 COL15A1P39059 1388 aa14.11□□□□□ -0.15
VRK3-208ENST00000594104 HIP1O00291 1037 aa14.11□□□□□ -0.15
VRK3-208ENST00000594104 ZC3H6P61129 1189 aaKnown RBP14.11□□□□□ -0.15
VRK3-208ENST00000594104 GZF1Q9H116 711 aaPredicted RBP14.11□□□□□ -0.15
VRK3-208ENST00000594104 MRC1P22897 1456 aa14.11□□□□□ -0.15
VRK3-208ENST00000594104 SNRPA1P09661 255 aaKnown RBP14.1□□□□□ -0.15
VRK3-208ENST00000594104 PROSER3Q2NL68 480 aa14.1□□□□□ -0.15
VRK3-208ENST00000594104 KIAA1211Q6ZU35 1233 aa14.1□□□□□ -0.15
VRK3-208ENST00000594104 UNC5CLQ8IV45 518 aa14.1□□□□□ -0.15
VRK3-208ENST00000594104 KRI1Q8N9T8 703 aaKnown RBP14.1□□□□□ -0.15
VRK3-208ENST00000594104 RAD50Q92878 1312 aa14.1□□□□□ -0.15
VRK3-208ENST00000594104 COL18A1P39060 1754 aa14.09□□□□□ -0.15
VRK3-208ENST00000594104 KDM6AO15550 1401 aaPredicted RBP14.09□□□□□ -0.15
VRK3-208ENST00000594104 ANXA1P04083 346 aa14.09□□□□□ -0.15
VRK3-208ENST00000594104 IFIT2P09913 472 aaKnown RBP14.09□□□□□ -0.15
VRK3-208ENST00000594104 FAM117AQ9C073 453 aa14.09□□□□□ -0.15
VRK3-208ENST00000594104 GRPEL1Q9HAV7 217 aa14.09□□□□□ -0.15
VRK3-208ENST00000594104 SPATA31A3Q5VYP0 1347 aa14.09□□□□□ -0.15
VRK3-208ENST00000594104 PDE4DQ08499 809 aa14.09□□□□□ -0.15
VRK3-208ENST00000594104 G3BP1Q13283 466 aaKnown RBP eCLIP14.09□□□□□ -0.15
VRK3-208ENST00000594104 TMCO4Q5TGY1 634 aa14.09□□□□□ -0.15
VRK3-208ENST00000594104 RIC3Q7Z5B4 369 aa14.09□□□□□ -0.15
VRK3-208ENST00000594104 EVI5LQ96CN4 794 aa14.09□□□□□ -0.15
VRK3-208ENST00000594104 METTL22Q9BUU2 404 aaPredicted RBP14.09□□□□□ -0.15
VRK3-208ENST00000594104 ERBB4Q15303 1308 aa14.09□□□□□ -0.15
VRK3-208ENST00000594104 SCN11AQ9UI33 1791 aa14.08□□□□□ -0.16
VRK3-208ENST00000594104 FMNL2Q96PY5 1086 aa14.08□□□□□ -0.16
VRK3-208ENST00000594104 CRYBG1Q9Y4K1 1723 aa14.08□□□□□ -0.16
VRK3-208ENST00000594104 CSB-PGBD3P0DP91 1061 aa14.07□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms