RNA–Protein interactions for RNA: ENST00000594090.5

VRK3-206, Transcript of vaccinia related kinase 3, humanhuman

TSL 1 (best)

Gene VRK3, Length 1,448 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-206ENST00000594090 N4BP2Q86UW6 1770 aaPredicted RBP18.88■□□□□ 0.61
VRK3-206ENST00000594090 DCAF8L1A6NGE4 600 aa18.88■□□□□ 0.61
VRK3-206ENST00000594090 SERPINB2P05120 415 aa18.88■□□□□ 0.61
VRK3-206ENST00000594090 KIF6Q6ZMV9 814 aa18.88■□□□□ 0.61
VRK3-206ENST00000594090 MAP3K15Q6ZN16 1313 aa18.87■□□□□ 0.61
VRK3-206ENST00000594090 C8orf58Q8NAV2 365 aa18.87■□□□□ 0.61
VRK3-206ENST00000594090 DDX21Q9NR30 783 aaKnown RBP eCLIP18.87■□□□□ 0.61
VRK3-206ENST00000594090 CHPF2Q9P2E5 772 aa18.87■□□□□ 0.61
VRK3-206ENST00000594090 NUP98P52948 1817 aa18.87■□□□□ 0.61
VRK3-206ENST00000594090 ERVV-1B6SEH8 477 aa18.86■□□□□ 0.61
VRK3-206ENST00000594090 HLFQ16534 295 aa18.86■□□□□ 0.61
VRK3-206ENST00000594090 SETDB2Q96T68 719 aa18.86■□□□□ 0.61
VRK3-206ENST00000594090 FANCIQ9NVI1 1328 aa18.86■□□□□ 0.61
VRK3-206ENST00000594090 ELL2O00472 640 aaPredicted RBP18.85■□□□□ 0.61
VRK3-206ENST00000594090 TGFB2P61812 414 aa18.85■□□□□ 0.61
VRK3-206ENST00000594090 GOLGB1Q14789 3259 aaKnown RBP18.85■□□□□ 0.61
VRK3-206ENST00000594090 ZNF521Q96K83 1311 aa18.85■□□□□ 0.61
VRK3-206ENST00000594090 ATP10DQ9P241 1426 aa18.85■□□□□ 0.61
VRK3-206ENST00000594090 TSPYL6Q8N831 410 aa18.84■□□□□ 0.61
VRK3-206ENST00000594090 ZBTB3Q9H5J0 574 aa18.84■□□□□ 0.61
VRK3-206ENST00000594090 DBF4Q9UBU7 674 aaPredicted RBP18.84■□□□□ 0.61
VRK3-206ENST00000594090 BRCA1P38398 1863 aaKnown RBP18.84■□□□□ 0.61
VRK3-206ENST00000594090 GPR162Q16538 588 aa18.83■□□□□ 0.61
VRK3-206ENST00000594090 PELP1Q8IZL8 1130 aaKnown RBP18.83■□□□□ 0.61
VRK3-206ENST00000594090 SPINK5Q9NQ38 1064 aaPredicted RBP18.83■□□□□ 0.61
VRK3-206ENST00000594090 ANKRD31Q8N7Z5 1873 aa18.83■□□□□ 0.61
VRK3-206ENST00000594090 COPS6Q7L5N1 327 aa18.83■□□□□ 0.6
VRK3-206ENST00000594090 XAGE3Q8WTP9 111 aa18.83■□□□□ 0.6
VRK3-206ENST00000594090 NIP7Q9Y221 180 aaKnown RBP eCLIP18.83■□□□□ 0.6
VRK3-206ENST00000594090 ANKRD36CQ5JPF3 1778 aa18.82■□□□□ 0.6
VRK3-206ENST00000594090 DLEC1Q9Y238 1755 aa18.82■□□□□ 0.6
VRK3-206ENST00000594090 A0A0G2JLW4 131 aa18.82■□□□□ 0.6
VRK3-206ENST00000594090 DPEP1P16444 411 aa18.82■□□□□ 0.6
VRK3-206ENST00000594090 YBX3P16989 372 aaKnown RBP eCLIP18.82■□□□□ 0.64e-7■■□□□ 11.9
VRK3-206ENST00000594090 AIMP1Q12904 312 aaKnown RBP18.82■□□□□ 0.6
VRK3-206ENST00000594090 PRR5LQ6MZQ0 368 aa18.82■□□□□ 0.6
VRK3-206ENST00000594090 CNBD1Q8NA66 436 aa18.82■□□□□ 0.6
VRK3-206ENST00000594090 GIGYF2Q6Y7W6 1299 aaKnown RBP18.81■□□□□ 0.6
VRK3-206ENST00000594090 HYPKQ9NX55 129 aa18.81■□□□□ 0.6
VRK3-206ENST00000594090 WWC3Q9ULE0 1092 aa18.81■□□□□ 0.6
VRK3-206ENST00000594090 UTRNP46939 3433 aa18.8■□□□□ 0.6
VRK3-206ENST00000594090 KCNA3P22001 575 aa18.8■□□□□ 0.6
VRK3-206ENST00000594090 GOLGA2Q08379 1002 aa18.8■□□□□ 0.6
VRK3-206ENST00000594090 TWISTNBQ3B726 338 aaPredicted RBP18.8■□□□□ 0.6
VRK3-206ENST00000594090 CCDC30Q5VVM6 783 aa18.8■□□□□ 0.6
VRK3-206ENST00000594090 NBPF5PQ86XG9 351 aaPredicted RBP18.8■□□□□ 0.6
VRK3-206ENST00000594090 CHMP4AQ9BY43 222 aa18.8■□□□□ 0.6
VRK3-206ENST00000594090 MYH16Q9H6N6 1097 aa18.8■□□□□ 0.6
VRK3-206ENST00000594090 NPHP1O15259 732 aa18.79■□□□□ 0.6
VRK3-206ENST00000594090 CHRNA5P30532 468 aa18.79■□□□□ 0.6
VRK3-206ENST00000594090 COL11A2P13942 1736 aaPredicted RBP18.79■□□□□ 0.6
VRK3-206ENST00000594090 UBN2Q6ZU65 1347 aa18.79■□□□□ 0.6
VRK3-206ENST00000594090 ARFGEF2Q9Y6D5 1785 aa18.79■□□□□ 0.6
VRK3-206ENST00000594090 ST5P78524 1137 aa18.78■□□□□ 0.6
VRK3-206ENST00000594090 CCDC24Q8N4L8 307 aa18.78■□□□□ 0.6
VRK3-206ENST00000594090 IBTKQ9P2D0 1353 aaPredicted RBP18.78■□□□□ 0.6
VRK3-206ENST00000594090 GPTP24298 496 aa18.77■□□□□ 0.6
VRK3-206ENST00000594090 EXOSC9Q06265 439 aaKnown RBP18.77■□□□□ 0.6
VRK3-206ENST00000594090 ZNF34Q8IZ26 560 aa18.77■□□□□ 0.6
VRK3-206ENST00000594090 BRIP1Q9BX63 1249 aa18.77■□□□□ 0.6
VRK3-206ENST00000594090 FAM177BA6PVY3 158 aa18.76■□□□□ 0.59
VRK3-206ENST00000594090 TPTE2Q6XPS3 522 aa18.76■□□□□ 0.59
VRK3-206ENST00000594090 PLBD2Q8NHP8 589 aa18.76■□□□□ 0.59
VRK3-206ENST00000594090 GRIN3BO60391 1043 aa18.75■□□□□ 0.59
VRK3-206ENST00000594090 HSP90AB3PQ58FF7 597 aa18.75■□□□□ 0.59
VRK3-206ENST00000594090 ANKRD13DQ6ZTN6 518 aa18.75■□□□□ 0.59
VRK3-206ENST00000594090 NYXQ9GZU5 481 aa18.75■□□□□ 0.59
VRK3-206ENST00000594090 PHAXQ9H814 394 aaKnown RBP18.75■□□□□ 0.59
VRK3-206ENST00000594090 PIM2Q9P1W9 311 aa18.75■□□□□ 0.59
VRK3-206ENST00000594090 ARFGEF1Q9Y6D6 1849 aa18.75■□□□□ 0.59
VRK3-206ENST00000594090 PDE6BP35913 854 aa18.74■□□□□ 0.59
VRK3-206ENST00000594090 C2CD5Q86YS7 1000 aa18.74■□□□□ 0.59
VRK3-206ENST00000594090 STK31Q9BXU1 1019 aa18.74■□□□□ 0.59
VRK3-206ENST00000594090 BCS1LQ9Y276 419 aa18.74■□□□□ 0.59
VRK3-206ENST00000594090 TNRC6CQ9HCJ0 1690 aaKnown RBP18.74■□□□□ 0.59
VRK3-206ENST00000594090 CHD4Q14839 1912 aa18.74■□□□□ 0.59
VRK3-206ENST00000594090 E9PSI1 815 aa18.74■□□□□ 0.59
VRK3-206ENST00000594090 H0YIN7 160 aa18.74■□□□□ 0.59
VRK3-206ENST00000594090 TCERG1O14776 1098 aaKnown RBP18.74■□□□□ 0.59
VRK3-206ENST00000594090 VAMP4O75379 141 aa18.74■□□□□ 0.59
VRK3-206ENST00000594090 TCIRG1Q13488 830 aa18.74■□□□□ 0.59
VRK3-206ENST00000594090 PARP10Q53GL7 1025 aa18.74■□□□□ 0.59
VRK3-206ENST00000594090 SUSD4Q5VX71 490 aa18.74■□□□□ 0.59
VRK3-206ENST00000594090 PDZRN3Q9UPQ7 1066 aa18.74■□□□□ 0.59
VRK3-206ENST00000594090 ABCC12Q96J65 1359 aa18.73■□□□□ 0.59
VRK3-206ENST00000594090 NTSR2O95665 410 aa18.73■□□□□ 0.59
VRK3-206ENST00000594090 GTF2E1P29083 439 aaPredicted RBP18.72■□□□□ 0.59
VRK3-206ENST00000594090 DALRD3Q5D0E6 543 aaKnown RBP18.72■□□□□ 0.59
VRK3-206ENST00000594090 PPP1R42Q7Z4L9 355 aa18.72■□□□□ 0.59
VRK3-206ENST00000594090 NUTM1Q86Y26 1132 aa18.72■□□□□ 0.59
VRK3-206ENST00000594090 RIC1Q4ADV7 1423 aa18.72■□□□□ 0.59
VRK3-206ENST00000594090 CACNA1FO60840 1977 aa18.71■□□□□ 0.59
VRK3-206ENST00000594090 SLFN5Q08AF3 891 aa18.71■□□□□ 0.59
VRK3-206ENST00000594090 ERFEQ4G0M1 354 aa18.71■□□□□ 0.59
VRK3-206ENST00000594090 RIC3Q7Z5B4 369 aa18.71■□□□□ 0.59
VRK3-206ENST00000594090 NLRP10Q86W26 655 aa18.71■□□□□ 0.59
VRK3-206ENST00000594090 DDX58O95786 925 aaKnown RBP18.7■□□□□ 0.58
VRK3-206ENST00000594090 KLRG2A4D1S0 409 aaPredicted RBP18.69■□□□□ 0.58
VRK3-206ENST00000594090 SLC4A2P04920 1241 aa18.69■□□□□ 0.58
VRK3-206ENST00000594090 SRGNP10124 158 aa18.69■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms