RNA–Protein interactions for RNA: ENST00000586457.1

CLIP3-203, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

TSL 1 (best)

Gene CLIP3, Length 433 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-203ENST00000586457 HDGFL1Q5TGJ6 251 aa14.1□□□□□ -0.15
CLIP3-203ENST00000586457 C2CD5Q86YS7 1000 aa14.1□□□□□ -0.15
CLIP3-203ENST00000586457 KDM3BQ7LBC6 1761 aa14.09□□□□□ -0.15
CLIP3-203ENST00000586457 RGL2O15211 777 aa14.09□□□□□ -0.15
CLIP3-203ENST00000586457 CHRNA5P30532 468 aa14.09□□□□□ -0.15
CLIP3-203ENST00000586457 AIMP1Q12904 312 aaKnown RBP14.09□□□□□ -0.15
CLIP3-203ENST00000586457 ZNF622Q969S3 477 aaKnown RBP eCLIP14.09□□□□□ -0.15
CLIP3-203ENST00000586457 BRIP1Q9BX63 1249 aa14.09□□□□□ -0.15
CLIP3-203ENST00000586457 ZBTB3Q9H5J0 574 aa14.09□□□□□ -0.15
CLIP3-203ENST00000586457 MBIPQ9NS73 344 aa14.09□□□□□ -0.15
CLIP3-203ENST00000586457 HOXB7P09629 217 aa14.08□□□□□ -0.16
CLIP3-203ENST00000586457 DUSP27Q5VZP5 1158 aa14.08□□□□□ -0.16
CLIP3-203ENST00000586457 NYXQ9GZU5 481 aa14.08□□□□□ -0.16
CLIP3-203ENST00000586457 DBF4Q9UBU7 674 aaPredicted RBP14.08□□□□□ -0.16
CLIP3-203ENST00000586457 MAP3K15Q6ZN16 1313 aa14.08□□□□□ -0.16
CLIP3-203ENST00000586457 ELL2O00472 640 aaPredicted RBP14.07□□□□□ -0.16
CLIP3-203ENST00000586457 HLFQ16534 295 aa14.07□□□□□ -0.16
CLIP3-203ENST00000586457 CCDC27Q2M243 656 aa14.07□□□□□ -0.16
CLIP3-203ENST00000586457 PRR5LQ6MZQ0 368 aa14.07□□□□□ -0.16
CLIP3-203ENST00000586457 CCDC24Q8N4L8 307 aa14.07□□□□□ -0.16
CLIP3-203ENST00000586457 DDX21Q9NR30 783 aaKnown RBP eCLIP14.07□□□□□ -0.16
CLIP3-203ENST00000586457 PXDNLA1KZ92 1463 aa14.06□□□□□ -0.16
CLIP3-203ENST00000586457 KRT24Q2M2I5 525 aa14.06□□□□□ -0.16
CLIP3-203ENST00000586457 HSP90AB3PQ58FF7 597 aa14.06□□□□□ -0.16
CLIP3-203ENST00000586457 TTLL7Q6ZT98 887 aa14.06□□□□□ -0.16
CLIP3-203ENST00000586457 COPS6Q7L5N1 327 aa14.06□□□□□ -0.16
CLIP3-203ENST00000586457 PPP1R42Q7Z4L9 355 aa14.06□□□□□ -0.16
CLIP3-203ENST00000586457 WWC1Q8IX03 1113 aa14.06□□□□□ -0.16
CLIP3-203ENST00000586457 TTLL6Q8N841 843 aa14.06□□□□□ -0.16
CLIP3-203ENST00000586457 HYPKQ9NX55 129 aa14.06□□□□□ -0.16
CLIP3-203ENST00000586457 LAMB4A4D0S4 1761 aa14.06□□□□□ -0.16
CLIP3-203ENST00000586457 ANXA1P04083 346 aa14.05□□□□□ -0.16
CLIP3-203ENST00000586457 GPTP24298 496 aa14.05□□□□□ -0.16
CLIP3-203ENST00000586457 CHPF2Q9P2E5 772 aa14.05□□□□□ -0.16
CLIP3-203ENST00000586457 N4BP2Q86UW6 1770 aaPredicted RBP14.04□□□□□ -0.16
CLIP3-203ENST00000586457 ZNF853P0CG23 659 aa14.04□□□□□ -0.16
CLIP3-203ENST00000586457 KCNA3P22001 575 aa14.04□□□□□ -0.16
CLIP3-203ENST00000586457 NCBP3Q53F19 620 aaKnown RBP14.04□□□□□ -0.16
CLIP3-203ENST00000586457 CCDC30Q5VVM6 783 aa14.04□□□□□ -0.16
CLIP3-203ENST00000586457 GIGYF2Q6Y7W6 1299 aaKnown RBP14.04□□□□□ -0.16
CLIP3-203ENST00000586457 XAGE3Q8WTP9 111 aa14.04□□□□□ -0.16
CLIP3-203ENST00000586457 CNKSR1Q969H4 720 aa14.04□□□□□ -0.16
CLIP3-203ENST00000586457 STK31Q9BXU1 1019 aa14.04□□□□□ -0.16
CLIP3-203ENST00000586457 PARP10Q53GL7 1025 aa14.03□□□□□ -0.16
CLIP3-203ENST00000586457 ANKRD13DQ6ZTN6 518 aa14.03□□□□□ -0.16
CLIP3-203ENST00000586457 WDR63Q8IWG1 891 aa14.03□□□□□ -0.16
CLIP3-203ENST00000586457 KIF13BQ9NQT8 1826 aa14.03□□□□□ -0.16
CLIP3-203ENST00000586457 CHD4Q14839 1912 aa14.03□□□□□ -0.16
CLIP3-203ENST00000586457 SCN7AQ01118 1682 aa14.02□□□□□ -0.16
CLIP3-203ENST00000586457 IL16Q14005 1332 aa14.02□□□□□ -0.17
CLIP3-203ENST00000586457 DDX58O95786 925 aaKnown RBP14.02□□□□□ -0.17
CLIP3-203ENST00000586457 GOLGA2Q08379 1002 aa14.02□□□□□ -0.17
CLIP3-203ENST00000586457 PDIA6Q15084 440 aa14.02□□□□□ -0.17
CLIP3-203ENST00000586457 PROSER3Q2NL68 480 aa14.02□□□□□ -0.17
CLIP3-203ENST00000586457 RIC3Q7Z5B4 369 aa14.02□□□□□ -0.17
CLIP3-203ENST00000586457 TSR2Q969E8 191 aaKnown RBP14.02□□□□□ -0.17
CLIP3-203ENST00000586457 MASTLQ96GX5 879 aa14.02□□□□□ -0.17
CLIP3-203ENST00000586457 TMX4Q9H1E5 349 aaPredicted RBP14.02□□□□□ -0.17
CLIP3-203ENST00000586457 ZNF219Q9P2Y4 722 aaPredicted RBP14.02□□□□□ -0.17
CLIP3-203ENST00000586457 STYK1Q6J9G0 422 aa14.01□□□□□ -0.17
CLIP3-203ENST00000586457 C8orf58Q8NAV2 365 aa14.01□□□□□ -0.17
CLIP3-203ENST00000586457 ZNF784Q8NCA9 323 aaPredicted RBP14.01□□□□□ -0.17
CLIP3-203ENST00000586457 RPGRQ92834 1020 aaKnown RBP14.01□□□□□ -0.17
CLIP3-203ENST00000586457 UTP14AQ9BVJ6 771 aaKnown RBP14.01□□□□□ -0.17
CLIP3-203ENST00000586457 MYH16Q9H6N6 1097 aa14.01□□□□□ -0.17
CLIP3-203ENST00000586457 AFDNP55196 1824 aaKnown RBP14.01□□□□□ -0.17
CLIP3-203ENST00000586457 NPR1P16066 1061 aa14□□□□□ -0.17
CLIP3-203ENST00000586457 ALDH1B1P30837 517 aa14□□□□□ -0.17
CLIP3-203ENST00000586457 TWISTNBQ3B726 338 aaPredicted RBP14□□□□□ -0.17
CLIP3-203ENST00000586457 NUTM1Q86Y26 1132 aa14□□□□□ -0.17
CLIP3-203ENST00000586457 ZNF34Q8IZ26 560 aa14□□□□□ -0.17
CLIP3-203ENST00000586457 PLBD2Q8NHP8 589 aa14□□□□□ -0.17
CLIP3-203ENST00000586457 CCER2I3L3R5 266 aa13.99□□□□□ -0.17
CLIP3-203ENST00000586457 SRGNP10124 158 aa13.99□□□□□ -0.17
CLIP3-203ENST00000586457 TCIRG1Q13488 830 aa13.99□□□□□ -0.17
CLIP3-203ENST00000586457 ERFEQ4G0M1 354 aa13.99□□□□□ -0.17
CLIP3-203ENST00000586457 SOGA3Q5TF21 947 aa13.99□□□□□ -0.17
CLIP3-203ENST00000586457 SUSD4Q5VX71 490 aa13.99□□□□□ -0.17
CLIP3-203ENST00000586457 DIEXFQ68CQ4 756 aaKnown RBP13.99□□□□□ -0.17
CLIP3-203ENST00000586457 ZNF526Q8TF50 670 aaPredicted RBP13.99□□□□□ -0.17
CLIP3-203ENST00000586457 NLRP3Q96P20 1036 aa13.99□□□□□ -0.17
CLIP3-203ENST00000586457 TRMT112Q9UI30 125 aaKnown RBP13.99□□□□□ -0.17
CLIP3-203ENST00000586457 BCORQ6W2J9 1755 aa13.99□□□□□ -0.17
CLIP3-203ENST00000586457 C21orf2O43822 256 aa13.98□□□□□ -0.17
CLIP3-203ENST00000586457 GPBP1L1Q9HC44 474 aaPredicted RBP13.98□□□□□ -0.17
CLIP3-203ENST00000586457 ATP10DQ9P241 1426 aa13.98□□□□□ -0.17
CLIP3-203ENST00000586457 C9orf131Q5VYM1 1079 aa13.97□□□□□ -0.17
CLIP3-203ENST00000586457 RBM17Q96I25 401 aaKnown RBP13.97□□□□□ -0.17
CLIP3-203ENST00000586457 RNF181Q9P0P0 153 aa13.97□□□□□ -0.17
CLIP3-203ENST00000586457 NRXN2Q9P2S2 1712 aa13.97□□□□□ -0.17
CLIP3-203ENST00000586457 HSP90B1P14625 803 aaKnown RBP13.96□□□□□ -0.17
CLIP3-203ENST00000586457 PRPF40BQ6NWY9 871 aaKnown RBP13.96□□□□□ -0.17
CLIP3-203ENST00000586457 LRP10Q7Z4F1 713 aa13.96□□□□□ -0.17
CLIP3-203ENST00000586457 NUP98P52948 1817 aa13.96□□□□□ -0.17
CLIP3-203ENST00000586457 RNF123Q5XPI4 1314 aa13.95□□□□□ -0.18
CLIP3-203ENST00000586457 UBN2Q6ZU65 1347 aa13.95□□□□□ -0.18
CLIP3-203ENST00000586457 ATP5J2-PTCD1G3V325 749 aa13.95□□□□□ -0.18
CLIP3-203ENST00000586457 TCERG1O14776 1098 aaKnown RBP13.95□□□□□ -0.18
CLIP3-203ENST00000586457 SLC4A2P04920 1241 aa13.95□□□□□ -0.18
CLIP3-203ENST00000586457 LMNB1P20700 586 aa13.95□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms