RNA–Protein interactions for RNA: ENST00000582352.1

SHMT1-208, Transcript of serine hydroxymethyltransferase 1, humanhuman

Gene SHMT1, Length 2,756 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-208ENST00000582352 GJB2P29033 226 aa14.62□□□□□ -0.07
SHMT1-208ENST00000582352 HYPKQ9NX55 129 aa14.62□□□□□ -0.07
SHMT1-208ENST00000582352 KLHL34Q8N239 644 aa14.62□□□□□ -0.07
SHMT1-208ENST00000582352 JAKMIP1Q96N16 626 aaKnown RBP14.62□□□□□ -0.07
SHMT1-208ENST00000582352 SH2B1Q9NRF2 756 aaPredicted RBP14.62□□□□□ -0.07
SHMT1-208ENST00000582352 USP42Q9H9J4 1324 aaKnown RBP14.61□□□□□ -0.07
SHMT1-208ENST00000582352 LARGE1O95461 756 aa14.61□□□□□ -0.07
SHMT1-208ENST00000582352 GIMAP6Q6P9H5 292 aa14.61□□□□□ -0.07
SHMT1-208ENST00000582352 DNAAF4Q8WXU2 420 aa14.61□□□□□ -0.07
SHMT1-208ENST00000582352 PDRG1Q9NUG6 133 aa14.61□□□□□ -0.07
SHMT1-208ENST00000582352 AMOTL2Q9Y2J4 779 aa14.61□□□□□ -0.07
SHMT1-208ENST00000582352 DNM1Q05193 864 aaKnown RBP14.61□□□□□ -0.07
SHMT1-208ENST00000582352 VPS53Q5VIR6 699 aa14.61□□□□□ -0.07
SHMT1-208ENST00000582352 NUTM2GQ5VZR2 741 aa14.61□□□□□ -0.07
SHMT1-208ENST00000582352 GPATCH3Q96I76 525 aa14.61□□□□□ -0.07
SHMT1-208ENST00000582352 ZSCAN31Q96LW9 406 aaPredicted RBP14.61□□□□□ -0.07
SHMT1-208ENST00000582352 CYP46A1Q9Y6A2 500 aa14.61□□□□□ -0.07
SHMT1-208ENST00000582352 VPS37CA5D8V6 355 aaPredicted RBP14.6□□□□□ -0.07
SHMT1-208ENST00000582352 CLASRPQ8N2M8 674 aaKnown RBP14.6□□□□□ -0.07
SHMT1-208ENST00000582352 CHMP4AQ9BY43 222 aa14.6□□□□□ -0.07
SHMT1-208ENST00000582352 CHPF2Q9P2E5 772 aa14.6□□□□□ -0.07
SHMT1-208ENST00000582352 PI4KAP2A4QPH2 592 aa14.6□□□□□ -0.07
SHMT1-208ENST00000582352 BEND3Q5T5X7 828 aa14.6□□□□□ -0.07
SHMT1-208ENST00000582352 PRPF40BQ6NWY9 871 aaKnown RBP14.6□□□□□ -0.07
SHMT1-208ENST00000582352 PI4KAP1Q8N8J0 262 aa14.6□□□□□ -0.07
SHMT1-208ENST00000582352 MTMR6Q9Y217 621 aa14.6□□□□□ -0.07
SHMT1-208ENST00000582352 EID1Q9Y6B2 187 aa14.6□□□□□ -0.07
SHMT1-208ENST00000582352 FUCA2Q9BTY2 467 aa14.59□□□□□ -0.07
SHMT1-208ENST00000582352 HOXB7P09629 217 aa14.59□□□□□ -0.07
SHMT1-208ENST00000582352 C17orf53Q8N3J3 647 aaPredicted RBP14.59□□□□□ -0.07
SHMT1-208ENST00000582352 USHBP1Q8N6Y0 703 aa14.59□□□□□ -0.07
SHMT1-208ENST00000582352 SPTLC3Q9NUV7 552 aa14.59□□□□□ -0.07
SHMT1-208ENST00000582352 ZKSCAN1P17029 563 aaPredicted RBP14.58□□□□□ -0.07
SHMT1-208ENST00000582352 PTH1RQ03431 593 aa14.58□□□□□ -0.07
SHMT1-208ENST00000582352 TM6SF1Q9BZW5 370 aa14.58□□□□□ -0.07
SHMT1-208ENST00000582352 ECHDC1Q9NTX5 307 aa14.58□□□□□ -0.07
SHMT1-208ENST00000582352 CEMIPQ8WUJ3 1361 aa14.58□□□□□ -0.08
SHMT1-208ENST00000582352 CCDC192P0DO97 292 aa14.58□□□□□ -0.08
SHMT1-208ENST00000582352 ADCK5Q3MIX3 580 aa14.58□□□□□ -0.08
SHMT1-208ENST00000582352 MARF1Q9Y4F3 1742 aaKnown RBP14.58□□□□□ -0.08
SHMT1-208ENST00000582352 IFIT2P09913 472 aaKnown RBP14.57□□□□□ -0.08
SHMT1-208ENST00000582352 EIF4A1P60842 406 aaKnown RBP14.57□□□□□ -0.08
SHMT1-208ENST00000582352 ZSWIM6Q9HCJ5 1215 aa14.57□□□□□ -0.08
SHMT1-208ENST00000582352 GOLGA6L6A8MZA4 724 aa14.57□□□□□ -0.08
SHMT1-208ENST00000582352 TPM3P06753 285 aa14.57□□□□□ -0.08
SHMT1-208ENST00000582352 KCNJ4P48050 445 aa14.57□□□□□ -0.08
SHMT1-208ENST00000582352 GTF2F1P35269 517 aaKnown RBP eCLIP14.56□□□□□ -0.08
SHMT1-208ENST00000582352 ABTB2Q8N961 1025 aa14.56□□□□□ -0.08
SHMT1-208ENST00000582352 CCDC171Q6TFL3 1326 aa14.56□□□□□ -0.08
SHMT1-208ENST00000582352 MED1Q15648 1581 aaPredicted RBP14.56□□□□□ -0.08
SHMT1-208ENST00000582352 KDM3BQ7LBC6 1761 aa14.56□□□□□ -0.08
SHMT1-208ENST00000582352 KRT85P78386 507 aa14.56□□□□□ -0.08
SHMT1-208ENST00000582352 ERC1Q8IUD2 1116 aa14.56□□□□□ -0.08
SHMT1-208ENST00000582352 CCDC94Q9BW85 323 aaPredicted RBP14.56□□□□□ -0.08
SHMT1-208ENST00000582352 CHD2O14647 1828 aaKnown RBP14.56□□□□□ -0.08
SHMT1-208ENST00000582352 CHAF1AQ13111 956 aaPredicted RBP14.56□□□□□ -0.08
SHMT1-208ENST00000582352 MTX1Q13505 466 aa14.56□□□□□ -0.08
SHMT1-208ENST00000582352 EVI5LQ96CN4 794 aa14.56□□□□□ -0.08
SHMT1-208ENST00000582352 KIF3AQ9Y496 699 aa14.56□□□□□ -0.08
SHMT1-208ENST00000582352 ADCY9O60503 1353 aa14.55□□□□□ -0.08
SHMT1-208ENST00000582352 USP54Q70EL1 1684 aa14.55□□□□□ -0.08
SHMT1-208ENST00000582352 DTNBO60941 627 aa14.55□□□□□ -0.08
SHMT1-208ENST00000582352 ME3Q16798 604 aa14.55□□□□□ -0.08
SHMT1-208ENST00000582352 C14orf37Q86TY3 774 aa14.55□□□□□ -0.08
SHMT1-208ENST00000582352 C9orf78Q9NZ63 289 aaPredicted RBP14.55□□□□□ -0.08
SHMT1-208ENST00000582352 ANKARQ7Z5J8 1434 aa14.55□□□□□ -0.08
SHMT1-208ENST00000582352 ANXA1P04083 346 aa14.55□□□□□ -0.08
SHMT1-208ENST00000582352 PDIA4P13667 645 aaKnown RBP14.55□□□□□ -0.08
SHMT1-208ENST00000582352 NECAB1Q8N987 351 aa14.55□□□□□ -0.08
SHMT1-208ENST00000582352 KCNB2Q92953 911 aa14.55□□□□□ -0.08
SHMT1-208ENST00000582352 LARP1BQ659C4 914 aaKnown RBP14.54□□□□□ -0.08
SHMT1-208ENST00000582352 SMAP1Q8IYB5 467 aaPredicted RBP14.54□□□□□ -0.08
SHMT1-208ENST00000582352 SPC24Q8NBT2 197 aa14.54□□□□□ -0.08
SHMT1-208ENST00000582352 RBM8AQ9Y5S9 174 aaKnown RBP14.54□□□□□ -0.08
SHMT1-208ENST00000582352 LTN1O94822 1766 aa14.54□□□□□ -0.08
SHMT1-208ENST00000582352 HIP1O00291 1037 aa14.54□□□□□ -0.08
SHMT1-208ENST00000582352 PDCP20941 246 aa14.54□□□□□ -0.08
SHMT1-208ENST00000582352 TEFQ10587 303 aa14.54□□□□□ -0.08
SHMT1-208ENST00000582352 ST3GAL1Q11201 340 aa14.54□□□□□ -0.08
SHMT1-208ENST00000582352 NECTIN1Q15223 517 aa14.54□□□□□ -0.08
SHMT1-208ENST00000582352 MAP3K11Q16584 847 aa14.54□□□□□ -0.08
SHMT1-208ENST00000582352 AACSQ86V21 672 aa14.54□□□□□ -0.08
SHMT1-208ENST00000582352 FAM200AQ8TCP9 573 aa14.54□□□□□ -0.08
SHMT1-208ENST00000582352 DDX54Q8TDD1 881 aaKnown RBP14.54□□□□□ -0.08
SHMT1-208ENST00000582352 NUP62CLQ9H1M0 184 aa14.54□□□□□ -0.08
SHMT1-208ENST00000582352 HDAC5Q9UQL6 1122 aa14.54□□□□□ -0.08
SHMT1-208ENST00000582352 PSMA5P28066 241 aa14.53□□□□□ -0.08
SHMT1-208ENST00000582352 CREB3L3Q68CJ9 461 aa14.53□□□□□ -0.08
SHMT1-208ENST00000582352 KIAA1524Q8TCG1 905 aa14.53□□□□□ -0.08
SHMT1-208ENST00000582352 TSC1Q92574 1164 aa14.53□□□□□ -0.08
SHMT1-208ENST00000582352 JARID2Q92833 1246 aaPredicted RBP14.53□□□□□ -0.08
SHMT1-208ENST00000582352 TPCN1Q9ULQ1 816 aa14.53□□□□□ -0.08
SHMT1-208ENST00000582352 AP5Z1O43299 807 aa14.53□□□□□ -0.08
SHMT1-208ENST00000582352 KCNF1Q9H3M0 494 aa14.53□□□□□ -0.08
SHMT1-208ENST00000582352 CHMP3Q9Y3E7 222 aa14.53□□□□□ -0.08
SHMT1-208ENST00000582352 TBX22Q9Y458 520 aa14.53□□□□□ -0.08
SHMT1-208ENST00000582352 ELP1O95163 1332 aa14.52□□□□□ -0.08
SHMT1-208ENST00000582352 CDC37L1Q7L3B6 337 aa14.52□□□□□ -0.08
SHMT1-208ENST00000582352 TTC6Q86TZ1 520 aa14.52□□□□□ -0.08
SHMT1-208ENST00000582352 FERMT3Q86UX7 667 aa14.52□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms