RNA–Protein interactions for RNA: ENST00000577085.1

SF3B3-215, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 4

Gene SF3B3, Length 529 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-215ENST00000577085 ZNF622Q969S3 477 aaKnown RBP eCLIP20.29■□□□□ 0.84
SF3B3-215ENST00000577085 BCORQ6W2J9 1755 aa20.29■□□□□ 0.84
SF3B3-215ENST00000577085 ZNF316A6NFI3 1004 aaPredicted RBP20.28■□□□□ 0.84
SF3B3-215ENST00000577085 CCDC24Q8N4L8 307 aa20.28■□□□□ 0.84
SF3B3-215ENST00000577085 NIP7Q9Y221 180 aaKnown RBP eCLIP20.28■□□□□ 0.84
SF3B3-215ENST00000577085 ADCY9O60503 1353 aa20.27■□□□□ 0.84
SF3B3-215ENST00000577085 RGL2O15211 777 aa20.27■□□□□ 0.84
SF3B3-215ENST00000577085 EIF2S2P20042 333 aaKnown RBP20.27■□□□□ 0.84
SF3B3-215ENST00000577085 ARFGEF1Q9Y6D6 1849 aa20.26■□□□□ 0.83
SF3B3-215ENST00000577085 GTF2E1P29083 439 aaPredicted RBP20.26■□□□□ 0.83
SF3B3-215ENST00000577085 C1QTNF8P60827 252 aa20.26■□□□□ 0.83
SF3B3-215ENST00000577085 TPTE2Q6XPS3 522 aa20.26■□□□□ 0.83
SF3B3-215ENST00000577085 ERBB4Q15303 1308 aa20.26■□□□□ 0.83
SF3B3-215ENST00000577085 FAM177BA6PVY3 158 aa20.25■□□□□ 0.83
SF3B3-215ENST00000577085 ERVV-1B6SEH8 477 aa20.24■□□□□ 0.83
SF3B3-215ENST00000577085 C9orf131Q5VYM1 1079 aa20.24■□□□□ 0.83
SF3B3-215ENST00000577085 TRIM35Q9UPQ4 493 aa20.24■□□□□ 0.83
SF3B3-215ENST00000577085 ANP32CO43423 234 aa20.23■□□□□ 0.83
SF3B3-215ENST00000577085 HLFQ16534 295 aa20.23■□□□□ 0.83
SF3B3-215ENST00000577085 MAP3K15Q6ZN16 1313 aa20.23■□□□□ 0.83
SF3B3-215ENST00000577085 CALD1Q05682 793 aaKnown RBP20.22■□□□□ 0.83
SF3B3-215ENST00000577085 ZBTB3Q9H5J0 574 aa20.22■□□□□ 0.83
SF3B3-215ENST00000577085 RNF181Q9P0P0 153 aa20.22■□□□□ 0.83
SF3B3-215ENST00000577085 DLEC1Q9Y238 1755 aa20.21■□□□□ 0.83
SF3B3-215ENST00000577085 CHL1O00533 1208 aa20.21■□□□□ 0.83
SF3B3-215ENST00000577085 APAF1O14727 1248 aa20.21■□□□□ 0.83
SF3B3-215ENST00000577085 TTLL7Q6ZT98 887 aa20.21■□□□□ 0.83
SF3B3-215ENST00000577085 NECTIN2Q92692 538 aa20.21■□□□□ 0.83
SF3B3-215ENST00000577085 CNKSR1Q969H4 720 aa20.21■□□□□ 0.83
SF3B3-215ENST00000577085 NYXQ9GZU5 481 aa20.21■□□□□ 0.83
SF3B3-215ENST00000577085 MASTLQ96GX5 879 aa20.2■□□□□ 0.82
SF3B3-215ENST00000577085 ZNF219Q9P2Y4 722 aaPredicted RBP20.2■□□□□ 0.82
SF3B3-215ENST00000577085 STYK1Q6J9G0 422 aa20.19■□□□□ 0.82
SF3B3-215ENST00000577085 ANKRD31Q8N7Z5 1873 aa20.18■□□□□ 0.82
SF3B3-215ENST00000577085 C21orf2O43822 256 aa20.18■□□□□ 0.82
SF3B3-215ENST00000577085 SRGNP10124 158 aa20.18■□□□□ 0.82
SF3B3-215ENST00000577085 RASSF7Q02833 373 aa20.18■□□□□ 0.82
SF3B3-215ENST00000577085 CFAP44Q96MT7 982 aa20.18■□□□□ 0.82
SF3B3-215ENST00000577085 SENP3-EIF4A1A0A087X0R7 540 aa20.17■□□□□ 0.82
SF3B3-215ENST00000577085 LMNB1P20700 586 aa20.17■□□□□ 0.82
SF3B3-215ENST00000577085 GPTP24298 496 aa20.17■□□□□ 0.82
SF3B3-215ENST00000577085 NPR1P16066 1061 aa20.16■□□□□ 0.82
SF3B3-215ENST00000577085 AIMP1Q12904 312 aaKnown RBP20.16■□□□□ 0.82
SF3B3-215ENST00000577085 SOGA3Q5TF21 947 aa20.16■□□□□ 0.82
SF3B3-215ENST00000577085 HDGFL1Q5TGJ6 251 aa20.16■□□□□ 0.82
SF3B3-215ENST00000577085 PRPF40BQ6NWY9 871 aaKnown RBP20.16■□□□□ 0.82
SF3B3-215ENST00000577085 MRS2Q9HD23 443 aa20.16■□□□□ 0.82
SF3B3-215ENST00000577085 KDM2BQ8NHM5 1336 aa20.16■□□□□ 0.82
SF3B3-215ENST00000577085 ANXA1P04083 346 aa20.15■□□□□ 0.82
SF3B3-215ENST00000577085 GNAI1P63096 354 aa20.15■□□□□ 0.82
SF3B3-215ENST00000577085 KRT24Q2M2I5 525 aa20.15■□□□□ 0.82
SF3B3-215ENST00000577085 PROSER3Q2NL68 480 aa20.15■□□□□ 0.82
SF3B3-215ENST00000577085 GIGYF2Q6Y7W6 1299 aaKnown RBP20.15■□□□□ 0.82
SF3B3-215ENST00000577085 COL11A2P13942 1736 aaPredicted RBP20.15■□□□□ 0.82
SF3B3-215ENST00000577085 HOXB7P09629 217 aa20.14■□□□□ 0.81
SF3B3-215ENST00000577085 PDIA6Q15084 440 aa20.14■□□□□ 0.81
SF3B3-215ENST00000577085 COPS6Q7L5N1 327 aa20.14■□□□□ 0.81
SF3B3-215ENST00000577085 PPP1R42Q7Z4L9 355 aa20.14■□□□□ 0.81
SF3B3-215ENST00000577085 NUTM1Q86Y26 1132 aa20.14■□□□□ 0.81
SF3B3-215ENST00000577085 DDX21Q9NR30 783 aaKnown RBP eCLIP20.14■□□□□ 0.81
SF3B3-215ENST00000577085 MBIPQ9NS73 344 aa20.14■□□□□ 0.81
SF3B3-215ENST00000577085 IFT57Q9NWB7 429 aa20.14■□□□□ 0.81
SF3B3-215ENST00000577085 PARP10Q53GL7 1025 aa20.13■□□□□ 0.81
SF3B3-215ENST00000577085 C16orf71Q8IYS4 520 aaPredicted RBP20.13■□□□□ 0.81
SF3B3-215ENST00000577085 XAGE3Q8WTP9 111 aa20.13■□□□□ 0.81
SF3B3-215ENST00000577085 ZC3H4Q9UPT8 1303 aaKnown RBP20.12■□□□□ 0.81
SF3B3-215ENST00000577085 NUP98P52948 1817 aa20.12■□□□□ 0.81
SF3B3-215ENST00000577085 ALDH1B1P30837 517 aa20.12■□□□□ 0.81
SF3B3-215ENST00000577085 ERFEQ4G0M1 354 aa20.12■□□□□ 0.81
SF3B3-215ENST00000577085 CCDC184Q52MB2 194 aa20.12■□□□□ 0.81
SF3B3-215ENST00000577085 HSP90AB3PQ58FF7 597 aa20.12■□□□□ 0.81
SF3B3-215ENST00000577085 DUSP27Q5VZP5 1158 aa20.12■□□□□ 0.81
SF3B3-215ENST00000577085 ZNF34Q8IZ26 560 aa20.12■□□□□ 0.81
SF3B3-215ENST00000577085 RPGRQ92834 1020 aaKnown RBP20.12■□□□□ 0.81
SF3B3-215ENST00000577085 TAOK3Q9H2K8 898 aa20.12■□□□□ 0.81
SF3B3-215ENST00000577085 CHPF2Q9P2E5 772 aa20.12■□□□□ 0.81
SF3B3-215ENST00000577085 DBF4Q9UBU7 674 aaPredicted RBP20.12■□□□□ 0.81
SF3B3-215ENST00000577085 IBTKQ9P2D0 1353 aaPredicted RBP20.11■□□□□ 0.81
SF3B3-215ENST00000577085 UBN2Q6ZU65 1347 aa20.11■□□□□ 0.81
SF3B3-215ENST00000577085 NFKBIEO00221 500 aa20.11■□□□□ 0.81
SF3B3-215ENST00000577085 SUSD4Q5VX71 490 aa20.11■□□□□ 0.81
SF3B3-215ENST00000577085 KLRG2A4D1S0 409 aaPredicted RBP20.1■□□□□ 0.81
SF3B3-215ENST00000577085 KIF3CO14782 793 aa20.1■□□□□ 0.81
SF3B3-215ENST00000577085 LRP10Q7Z4F1 713 aa20.1■□□□□ 0.81
SF3B3-215ENST00000577085 UTP14AQ9BVJ6 771 aaKnown RBP20.1■□□□□ 0.81
SF3B3-215ENST00000577085 NMRK2Q9NPI5 230 aa20.1■□□□□ 0.81
SF3B3-215ENST00000577085 CCDC93Q567U6 631 aa20.09■□□□□ 0.81
SF3B3-215ENST00000577085 ABCC12Q96J65 1359 aa20.08■□□□□ 0.81
SF3B3-215ENST00000577085 CACNA1SQ13698 1873 aa20.08■□□□□ 0.81
SF3B3-215ENST00000577085 ZNF853P0CG23 659 aa20.08■□□□□ 0.81
SF3B3-215ENST00000577085 CHMP4AQ9BY43 222 aa20.08■□□□□ 0.81
SF3B3-215ENST00000577085 HYPKQ9NX55 129 aa20.08■□□□□ 0.81
SF3B3-215ENST00000577085 SBF1O95248 1867 aa20.07■□□□□ 0.8
SF3B3-215ENST00000577085 ELL2O00472 640 aaPredicted RBP20.07■□□□□ 0.8
SF3B3-215ENST00000577085 TOMM70O94826 608 aa20.07■□□□□ 0.8
SF3B3-215ENST00000577085 NTSR2O95665 410 aa20.07■□□□□ 0.8
SF3B3-215ENST00000577085 DPY19L2Q6NUT2 758 aa20.07■□□□□ 0.8
SF3B3-215ENST00000577085 NLRP3Q96P20 1036 aa20.07■□□□□ 0.8
SF3B3-215ENST00000577085 SLX4Q8IY92 1834 aa20.06■□□□□ 0.8
SF3B3-215ENST00000577085 LTBP3Q9NS15 1303 aa20.06■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms