RNA–Protein interactions for RNA: ENST00000573936.5

CHD3-216, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 3

Gene CHD3, Length 749 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-216ENST00000573936 TBC1D2BQ9UPU7 963 aa14.24□□□□□ -0.13
CHD3-216ENST00000573936 E9PSI1 815 aa14.23□□□□□ -0.13
CHD3-216ENST00000573936 RGL2O15211 777 aa14.23□□□□□ -0.13
CHD3-216ENST00000573936 MYL6BP14649 208 aa14.23□□□□□ -0.13
CHD3-216ENST00000573936 C8orf58Q8NAV2 365 aa14.23□□□□□ -0.13
CHD3-216ENST00000573936 DDX21Q9NR30 783 aaKnown RBP eCLIP14.23□□□□□ -0.13
CHD3-216ENST00000573936 FANCIQ9NVI1 1328 aa14.22□□□□□ -0.13
CHD3-216ENST00000573936 ELL2O00472 640 aaPredicted RBP14.22□□□□□ -0.13
CHD3-216ENST00000573936 KIF3CO14782 793 aa14.22□□□□□ -0.13
CHD3-216ENST00000573936 TOMM70O94826 608 aa14.22□□□□□ -0.13
CHD3-216ENST00000573936 FKBP8Q14318 412 aa14.22□□□□□ -0.13
CHD3-216ENST00000573936 PDIA6Q15084 440 aa14.22□□□□□ -0.13
CHD3-216ENST00000573936 CCDC30Q5VVM6 783 aa14.22□□□□□ -0.13
CHD3-216ENST00000573936 CLEC4GQ6UXB4 293 aa14.22□□□□□ -0.13
CHD3-216ENST00000573936 KIF6Q6ZMV9 814 aa14.22□□□□□ -0.13
CHD3-216ENST00000573936 NECTIN2Q92692 538 aa14.22□□□□□ -0.13
CHD3-216ENST00000573936 DBF4Q9UBU7 674 aaPredicted RBP14.22□□□□□ -0.13
CHD3-216ENST00000573936 BCS1LQ9Y276 419 aa14.22□□□□□ -0.13
CHD3-216ENST00000573936 ZNF652Q9Y2D9 606 aa14.22□□□□□ -0.13
CHD3-216ENST00000573936 PARP3Q9Y6F1 533 aa14.22□□□□□ -0.13
CHD3-216ENST00000573936 ERVV-1B6SEH8 477 aa14.21□□□□□ -0.13
CHD3-216ENST00000573936 CAMTA2O94983 1202 aa14.21□□□□□ -0.13
CHD3-216ENST00000573936 TM4SF1P30408 202 aa14.21□□□□□ -0.13
CHD3-216ENST00000573936 TGFB2P61812 414 aa14.21□□□□□ -0.13
CHD3-216ENST00000573936 TWISTNBQ3B726 338 aaPredicted RBP14.21□□□□□ -0.13
CHD3-216ENST00000573936 ARHGAP27Q6ZUM4 889 aa14.21□□□□□ -0.13
CHD3-216ENST00000573936 C16orf71Q8IYS4 520 aaPredicted RBP14.21□□□□□ -0.13
CHD3-216ENST00000573936 HYPKQ9NX55 129 aa14.21□□□□□ -0.13
CHD3-216ENST00000573936 BRCA1P38398 1863 aaKnown RBP14.21□□□□□ -0.14
CHD3-216ENST00000573936 TSPYL6Q8N831 410 aa14.2□□□□□ -0.14
CHD3-216ENST00000573936 BCL2L12Q9HB09 334 aa14.2□□□□□ -0.14
CHD3-216ENST00000573936 SPINK5Q9NQ38 1064 aaPredicted RBP14.2□□□□□ -0.14
CHD3-216ENST00000573936 MAP3K15Q6ZN16 1313 aa14.19□□□□□ -0.14
CHD3-216ENST00000573936 A0A0G2JLW4 131 aa14.19□□□□□ -0.14
CHD3-216ENST00000573936 HNRNPUQ00839 825 aaKnown RBP eCLIP14.19□□□□□ -0.14
CHD3-216ENST00000573936 EXOSC9Q06265 439 aaKnown RBP14.19□□□□□ -0.14
CHD3-216ENST00000573936 SLFN5Q08AF3 891 aa14.19□□□□□ -0.14
CHD3-216ENST00000573936 STK31Q9BXU1 1019 aa14.19□□□□□ -0.14
CHD3-216ENST00000573936 CHPF2Q9P2E5 772 aa14.19□□□□□ -0.14
CHD3-216ENST00000573936 NFIXQ14938 502 aa14.18□□□□□ -0.14
CHD3-216ENST00000573936 PROSER3Q2NL68 480 aa14.18□□□□□ -0.14
CHD3-216ENST00000573936 COPS6Q7L5N1 327 aa14.18□□□□□ -0.14
CHD3-216ENST00000573936 LRP10Q7Z4F1 713 aa14.18□□□□□ -0.14
CHD3-216ENST00000573936 SETDB2Q96T68 719 aa14.18□□□□□ -0.14
CHD3-216ENST00000573936 POLRMTO00411 1230 aaKnown RBP14.17□□□□□ -0.14
CHD3-216ENST00000573936 VAMP4O75379 141 aa14.17□□□□□ -0.14
CHD3-216ENST00000573936 ANXA1P04083 346 aa14.17□□□□□ -0.14
CHD3-216ENST00000573936 DPEP1P16444 411 aa14.17□□□□□ -0.14
CHD3-216ENST00000573936 AIMP1Q12904 312 aaKnown RBP14.17□□□□□ -0.14
CHD3-216ENST00000573936 TBC1D9BQ66K14 1250 aa14.17□□□□□ -0.14
CHD3-216ENST00000573936 TTLL7Q6ZT98 887 aa14.17□□□□□ -0.14
CHD3-216ENST00000573936 XAGE3Q8WTP9 111 aa14.17□□□□□ -0.14
CHD3-216ENST00000573936 SERPINB2P05120 415 aa14.16□□□□□ -0.14
CHD3-216ENST00000573936 GIGYF2Q6Y7W6 1299 aaKnown RBP14.16□□□□□ -0.14
CHD3-216ENST00000573936 BICDL1Q6ZP65 573 aa14.16□□□□□ -0.14
CHD3-216ENST00000573936 ARFGEF1Q9Y6D6 1849 aa14.15□□□□□ -0.14
CHD3-216ENST00000573936 SCN7AQ01118 1682 aa14.15□□□□□ -0.14
CHD3-216ENST00000573936 CARMIL3Q8ND23 1372 aa14.15□□□□□ -0.14
CHD3-216ENST00000573936 DDR1Q08345 913 aa14.15□□□□□ -0.14
CHD3-216ENST00000573936 HLFQ16534 295 aa14.15□□□□□ -0.14
CHD3-216ENST00000573936 HSP90AB3PQ58FF7 597 aa14.15□□□□□ -0.14
CHD3-216ENST00000573936 TRMT2AQ8IZ69 625 aaKnown RBP14.15□□□□□ -0.14
CHD3-216ENST00000573936 ZBTB3Q9H5J0 574 aa14.15□□□□□ -0.14
CHD3-216ENST00000573936 DDX58O95786 925 aaKnown RBP14.14□□□□□ -0.15
CHD3-216ENST00000573936 ANKRD13DQ6ZTN6 518 aa14.14□□□□□ -0.15
CHD3-216ENST00000573936 PLBD2Q8NHP8 589 aa14.14□□□□□ -0.15
CHD3-216ENST00000573936 ZNF428Q96B54 188 aa14.14□□□□□ -0.15
CHD3-216ENST00000573936 CDCA7LQ96GN5 454 aa14.14□□□□□ -0.15
CHD3-216ENST00000573936 NIP7Q9Y221 180 aaKnown RBP eCLIP14.14□□□□□ -0.15
CHD3-216ENST00000573936 NPHP1O15259 732 aa14.13□□□□□ -0.15
CHD3-216ENST00000573936 SLC4A2P04920 1241 aa14.13□□□□□ -0.15
CHD3-216ENST00000573936 CT47B1P0C2W7 299 aaPredicted RBP14.13□□□□□ -0.15
CHD3-216ENST00000573936 DNAJC5GQ8N7S2 189 aa14.13□□□□□ -0.15
CHD3-216ENST00000573936 NMRK2Q9NPI5 230 aa14.13□□□□□ -0.15
CHD3-216ENST00000573936 BCORQ6W2J9 1755 aa14.13□□□□□ -0.15
CHD3-216ENST00000573936 ZBED9Q6R2W3 1325 aa14.13□□□□□ -0.15
CHD3-216ENST00000573936 KDM2BQ8NHM5 1336 aa14.13□□□□□ -0.15
CHD3-216ENST00000573936 KCNA3P22001 575 aa14.12□□□□□ -0.15
CHD3-216ENST00000573936 PARP10Q53GL7 1025 aa14.12□□□□□ -0.15
CHD3-216ENST00000573936 C9orf131Q5VYM1 1079 aa14.12□□□□□ -0.15
CHD3-216ENST00000573936 TPTE2Q6XPS3 522 aa14.12□□□□□ -0.15
CHD3-216ENST00000573936 RIC3Q7Z5B4 369 aa14.12□□□□□ -0.15
CHD3-216ENST00000573936 NBPF5PQ86XG9 351 aaPredicted RBP14.12□□□□□ -0.15
CHD3-216ENST00000573936 RBM46Q8TBY0 533 aaKnown RBP14.12□□□□□ -0.15
CHD3-216ENST00000573936 NYXQ9GZU5 481 aa14.12□□□□□ -0.15
CHD3-216ENST00000573936 PHAXQ9H814 394 aaKnown RBP14.12□□□□□ -0.15
CHD3-216ENST00000573936 PIM2Q9P1W9 311 aa14.12□□□□□ -0.15
CHD3-216ENST00000573936 AFDNP55196 1824 aaKnown RBP14.11□□□□□ -0.15
CHD3-216ENST00000573936 ST5P78524 1137 aa14.11□□□□□ -0.15
CHD3-216ENST00000573936 TCIRG1Q13488 830 aa14.11□□□□□ -0.15
CHD3-216ENST00000573936 PPP1R42Q7Z4L9 355 aa14.11□□□□□ -0.15
CHD3-216ENST00000573936 ZNF34Q8IZ26 560 aa14.11□□□□□ -0.15
CHD3-216ENST00000573936 CNBD1Q8NA66 436 aa14.11□□□□□ -0.15
CHD3-216ENST00000573936 PDZRN3Q9UPQ7 1066 aa14.11□□□□□ -0.15
CHD3-216ENST00000573936 TCERG1O14776 1098 aaKnown RBP14.1□□□□□ -0.15
CHD3-216ENST00000573936 GTF2E1P29083 439 aaPredicted RBP14.1□□□□□ -0.15
CHD3-216ENST00000573936 CHRNA5P30532 468 aa14.1□□□□□ -0.15
CHD3-216ENST00000573936 FSTL1Q12841 308 aa14.1□□□□□ -0.15
CHD3-216ENST00000573936 DALRD3Q5D0E6 543 aaKnown RBP14.1□□□□□ -0.15
CHD3-216ENST00000573936 GPTP24298 496 aa14.09□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 87.2 ms