RNA–Protein interactions for RNA: ENST00000571545.1

CIITA-207, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 3

Gene CIITA, Length 567 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-207ENST00000571545 C9orf131Q5VYM1 1079 aa12.83□□□□□ -0.36
CIITA-207ENST00000571545 ARFGEF2Q9Y6D5 1785 aa12.83□□□□□ -0.36
CIITA-207ENST00000571545 SOGA3Q5TF21 947 aa12.82□□□□□ -0.36
CIITA-207ENST00000571545 PRR5LQ6MZQ0 368 aa12.82□□□□□ -0.36
CIITA-207ENST00000571545 BABAM1Q9NWV8 329 aa12.82□□□□□ -0.36
CIITA-207ENST00000571545 RNF181Q9P0P0 153 aa12.82□□□□□ -0.36
CIITA-207ENST00000571545 ERBB4Q15303 1308 aa12.82□□□□□ -0.36
CIITA-207ENST00000571545 COL11A2P13942 1736 aaPredicted RBP12.82□□□□□ -0.36
CIITA-207ENST00000571545 LMNB1P20700 586 aa12.81□□□□□ -0.36
CIITA-207ENST00000571545 WDR43Q15061 677 aaKnown RBP eCLIP12.81□□□□□ -0.36
CIITA-207ENST00000571545 NBPF5PQ86XG9 351 aaPredicted RBP12.81□□□□□ -0.36
CIITA-207ENST00000571545 C16orf71Q8IYS4 520 aaPredicted RBP12.81□□□□□ -0.36
CIITA-207ENST00000571545 CNKSR1Q969H4 720 aa12.81□□□□□ -0.36
CIITA-207ENST00000571545 TIAM2Q8IVF5 1701 aa12.81□□□□□ -0.36
CIITA-207ENST00000571545 KIF3CO14782 793 aa12.8□□□□□ -0.36
CIITA-207ENST00000571545 DDX10Q13206 875 aaKnown RBP12.8□□□□□ -0.36
CIITA-207ENST00000571545 STYK1Q6J9G0 422 aa12.8□□□□□ -0.36
CIITA-207ENST00000571545 TPTE2Q6XPS3 522 aa12.8□□□□□ -0.36
CIITA-207ENST00000571545 ZNF622Q969S3 477 aaKnown RBP eCLIP12.8□□□□□ -0.36
CIITA-207ENST00000571545 PRAMEF22A3QJZ6 481 aa12.79□□□□□ -0.36
CIITA-207ENST00000571545 ERVV-1B6SEH8 477 aa12.79□□□□□ -0.36
CIITA-207ENST00000571545 TOMM70O94826 608 aa12.79□□□□□ -0.36
CIITA-207ENST00000571545 HSPA6P17066 643 aa12.79□□□□□ -0.36
CIITA-207ENST00000571545 RIPK4P57078 832 aa12.79□□□□□ -0.36
CIITA-207ENST00000571545 EIF4A1P60842 406 aaKnown RBP12.79□□□□□ -0.36
CIITA-207ENST00000571545 KIF6Q6ZMV9 814 aa12.79□□□□□ -0.36
CIITA-207ENST00000571545 MASTLQ96GX5 879 aa12.79□□□□□ -0.36
CIITA-207ENST00000571545 NYXQ9GZU5 481 aa12.79□□□□□ -0.36
CIITA-207ENST00000571545 TSPYL4Q9UJ04 414 aa12.79□□□□□ -0.36
CIITA-207ENST00000571545 CACNA1SQ13698 1873 aa12.78□□□□□ -0.36
CIITA-207ENST00000571545 FER1L6Q2WGJ9 1857 aa12.78□□□□□ -0.36
CIITA-207ENST00000571545 DICER1Q9UPY3 1922 aaKnown RBP12.78□□□□□ -0.36
CIITA-207ENST00000571545 NIP7Q9Y221 180 aaKnown RBP eCLIP12.78□□□□□ -0.36
CIITA-207ENST00000571545 LTBP3Q9NS15 1303 aa12.78□□□□□ -0.36
CIITA-207ENST00000571545 NUP98P52948 1817 aa12.78□□□□□ -0.36
CIITA-207ENST00000571545 IBTKQ9P2D0 1353 aaPredicted RBP12.78□□□□□ -0.36
CIITA-207ENST00000571545 CCDC88AQ3V6T2 1871 aa12.77□□□□□ -0.37
CIITA-207ENST00000571545 NBPF26B4DH59 902 aa12.77□□□□□ -0.37
CIITA-207ENST00000571545 SRGNP10124 158 aa12.77□□□□□ -0.37
CIITA-207ENST00000571545 GTF2E1P29083 439 aaPredicted RBP12.77□□□□□ -0.37
CIITA-207ENST00000571545 TMPOP42166 694 aaKnown RBP12.77□□□□□ -0.37
CIITA-207ENST00000571545 PIP4K2AP48426 406 aaPredicted RBP12.77□□□□□ -0.37
CIITA-207ENST00000571545 NBPF10Q6P3W6 841 aaKnown RBP12.77□□□□□ -0.37
CIITA-207ENST00000571545 NBPF15Q8N660 670 aa12.77□□□□□ -0.37
CIITA-207ENST00000571545 RBM46Q8TBY0 533 aaKnown RBP12.77□□□□□ -0.37
CIITA-207ENST00000571545 MIS18AQ9NYP9 233 aa12.77□□□□□ -0.37
CIITA-207ENST00000571545 MAP3K15Q6ZN16 1313 aa12.77□□□□□ -0.37
CIITA-207ENST00000571545 NPR1P16066 1061 aa12.76□□□□□ -0.37
CIITA-207ENST00000571545 RASSF7Q02833 373 aa12.76□□□□□ -0.37
CIITA-207ENST00000571545 RUNDC1Q96C34 613 aa12.76□□□□□ -0.37
CIITA-207ENST00000571545 THUMPD2Q9BTF0 503 aaKnown RBP12.76□□□□□ -0.37
CIITA-207ENST00000571545 TAOK3Q9H2K8 898 aa12.76□□□□□ -0.37
CIITA-207ENST00000571545 RIC1Q4ADV7 1423 aa12.76□□□□□ -0.37
CIITA-207ENST00000571545 APLP1P51693 650 aa12.75□□□□□ -0.37
CIITA-207ENST00000571545 DPY19L2Q6NUT2 758 aa12.75□□□□□ -0.37
CIITA-207ENST00000571545 PRPF40BQ6NWY9 871 aaKnown RBP12.75□□□□□ -0.37
CIITA-207ENST00000571545 NMRK2Q9NPI5 230 aa12.75□□□□□ -0.37
CIITA-207ENST00000571545 SLX4Q8IY92 1834 aa12.74□□□□□ -0.37
CIITA-207ENST00000571545 GLTPD2A6NH11 291 aa12.74□□□□□ -0.37
CIITA-207ENST00000571545 NFKBIEO00221 500 aa12.74□□□□□ -0.37
CIITA-207ENST00000571545 C21orf2O43822 256 aa12.74□□□□□ -0.37
CIITA-207ENST00000571545 ALDH1B1P30837 517 aa12.74□□□□□ -0.37
CIITA-207ENST00000571545 ZEB1P37275 1124 aaPredicted RBP12.74□□□□□ -0.37
CIITA-207ENST00000571545 FSTL1Q12841 308 aa12.74□□□□□ -0.37
CIITA-207ENST00000571545 CCDC93Q567U6 631 aa12.74□□□□□ -0.37
CIITA-207ENST00000571545 RRP7AQ9Y3A4 280 aaKnown RBP12.74□□□□□ -0.37
CIITA-207ENST00000571545 RNF123Q5XPI4 1314 aa12.73□□□□□ -0.37
CIITA-207ENST00000571545 KLRG2A4D1S0 409 aaPredicted RBP12.73□□□□□ -0.37
CIITA-207ENST00000571545 MYL6BP14649 208 aa12.73□□□□□ -0.37
CIITA-207ENST00000571545 CALD1Q05682 793 aaKnown RBP12.73□□□□□ -0.37
CIITA-207ENST00000571545 PARP10Q53GL7 1025 aa12.73□□□□□ -0.37
CIITA-207ENST00000571545 PRKRIP1Q9H875 184 aaPredicted RBP12.73□□□□□ -0.37
CIITA-207ENST00000571545 ANKRD36CQ5JPF3 1778 aa12.72□□□□□ -0.37
CIITA-207ENST00000571545 WDR90Q96KV7 1748 aa12.72□□□□□ -0.37
CIITA-207ENST00000571545 HOXB7P09629 217 aa12.72□□□□□ -0.37
CIITA-207ENST00000571545 ERFEQ4G0M1 354 aa12.72□□□□□ -0.37
CIITA-207ENST00000571545 GRIPAP1Q4V328 841 aa12.72□□□□□ -0.37
CIITA-207ENST00000571545 HSP90AB3PQ58FF7 597 aa12.72□□□□□ -0.37
CIITA-207ENST00000571545 GIGYF2Q6Y7W6 1299 aaKnown RBP12.72□□□□□ -0.37
CIITA-207ENST00000571545 PPP1R42Q7Z4L9 355 aa12.72□□□□□ -0.37
CIITA-207ENST00000571545 CCDC24Q8N4L8 307 aa12.72□□□□□ -0.37
CIITA-207ENST00000571545 NGEFQ8N5V2 710 aa12.72□□□□□ -0.37
CIITA-207ENST00000571545 VEGFAP15692 232 aaPredicted RBP12.71□□□□□ -0.37
CIITA-207ENST00000571545 HLFQ16534 295 aa12.71□□□□□ -0.37
CIITA-207ENST00000571545 RTKN2Q8IZC4 609 aa12.71□□□□□ -0.37
CIITA-207ENST00000571545 SMC1BQ8NDV3 1235 aa12.71□□□□□ -0.37
CIITA-207ENST00000571545 SPINK5Q9NQ38 1064 aaPredicted RBP12.71□□□□□ -0.37
CIITA-207ENST00000571545 CAPN15O75808 1086 aa12.7□□□□□ -0.38
CIITA-207ENST00000571545 EIF2S2P20042 333 aaKnown RBP12.7□□□□□ -0.38
CIITA-207ENST00000571545 NEUROD2Q15784 382 aa12.7□□□□□ -0.38
CIITA-207ENST00000571545 CRY2Q49AN0 593 aa12.7□□□□□ -0.38
CIITA-207ENST00000571545 CC2D2BQ6DHV5 1058 aa12.7□□□□□ -0.38
CIITA-207ENST00000571545 CCDC146Q8IYE0 955 aa12.7□□□□□ -0.38
CIITA-207ENST00000571545 RPGRQ92834 1020 aaKnown RBP12.7□□□□□ -0.38
CIITA-207ENST00000571545 CHMP4AQ9BY43 222 aa12.7□□□□□ -0.38
CIITA-207ENST00000571545 ZBTB3Q9H5J0 574 aa12.7□□□□□ -0.38
CIITA-207ENST00000571545 RRAGCQ9HB90 399 aa12.7□□□□□ -0.38
CIITA-207ENST00000571545 ZNF219Q9P2Y4 722 aaPredicted RBP12.7□□□□□ -0.38
CIITA-207ENST00000571545 FAM177BA6PVY3 158 aa12.69□□□□□ -0.38
CIITA-207ENST00000571545 CHL1O00533 1208 aa12.69□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms