RNA–Protein interactions for RNA: ENST00000569080.1

CDH3-209, Transcript of cadherin 3, humanhuman

TSL 5

Gene CDH3, Length 291 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-209ENST00000569080 BRIP1Q9BX63 1249 aa10.3□□□□□ -0.76
CDH3-209ENST00000569080 SLX4Q8IY92 1834 aa10.3□□□□□ -0.76
CDH3-209ENST00000569080 ABCC12Q96J65 1359 aa10.29□□□□□ -0.76
CDH3-209ENST00000569080 CHL1O00533 1208 aa10.29□□□□□ -0.76
CDH3-209ENST00000569080 PRELPP51888 382 aa10.29□□□□□ -0.76
CDH3-209ENST00000569080 C1QTNF8P60827 252 aa10.29□□□□□ -0.76
CDH3-209ENST00000569080 PDIA6Q15084 440 aa10.29□□□□□ -0.76
CDH3-209ENST00000569080 HLFQ16534 295 aa10.29□□□□□ -0.76
CDH3-209ENST00000569080 CCDC184Q52MB2 194 aa10.29□□□□□ -0.76
CDH3-209ENST00000569080 TTLL7Q6ZT98 887 aa10.29□□□□□ -0.76
CDH3-209ENST00000569080 C2CD5Q86YS7 1000 aa10.29□□□□□ -0.76
CDH3-209ENST00000569080 SETDB2Q96T68 719 aa10.29□□□□□ -0.76
CDH3-209ENST00000569080 IBTKQ9P2D0 1353 aaPredicted RBP10.28□□□□□ -0.76
CDH3-209ENST00000569080 RIC1Q4ADV7 1423 aa10.28□□□□□ -0.76
CDH3-209ENST00000569080 KRT24Q2M2I5 525 aa10.28□□□□□ -0.76
CDH3-209ENST00000569080 ARHGAP27Q6ZUM4 889 aa10.28□□□□□ -0.76
CDH3-209ENST00000569080 NPM2Q86SE8 214 aaKnown RBP10.28□□□□□ -0.76
CDH3-209ENST00000569080 ZNF652Q9Y2D9 606 aa10.28□□□□□ -0.76
CDH3-209ENST00000569080 MAP3K15Q6ZN16 1313 aa10.28□□□□□ -0.76
CDH3-209ENST00000569080 UBN2Q6ZU65 1347 aa10.28□□□□□ -0.76
CDH3-209ENST00000569080 SNED1Q8TER0 1413 aa10.27□□□□□ -0.77
CDH3-209ENST00000569080 KLRG2A4D1S0 409 aaPredicted RBP10.27□□□□□ -0.77
CDH3-209ENST00000569080 ERVV-1B6SEH8 477 aa10.27□□□□□ -0.77
CDH3-209ENST00000569080 NFKBIEO00221 500 aa10.27□□□□□ -0.77
CDH3-209ENST00000569080 SRGNP10124 158 aa10.27□□□□□ -0.77
CDH3-209ENST00000569080 PDE6BP35913 854 aa10.27□□□□□ -0.77
CDH3-209ENST00000569080 RASSF7Q02833 373 aa10.27□□□□□ -0.77
CDH3-209ENST00000569080 NEUROD2Q15784 382 aa10.27□□□□□ -0.77
CDH3-209ENST00000569080 PROSER3Q2NL68 480 aa10.27□□□□□ -0.77
CDH3-209ENST00000569080 C9orf131Q5VYM1 1079 aa10.27□□□□□ -0.77
CDH3-209ENST00000569080 TTLL6Q8N841 843 aa10.27□□□□□ -0.77
CDH3-209ENST00000569080 GPBP1L1Q9HC44 474 aaPredicted RBP10.27□□□□□ -0.77
CDH3-209ENST00000569080 PDZRN3Q9UPQ7 1066 aa10.27□□□□□ -0.77
CDH3-209ENST00000569080 CCDC88AQ3V6T2 1871 aa10.27□□□□□ -0.77
CDH3-209ENST00000569080 DICER1Q9UPY3 1922 aaKnown RBP10.27□□□□□ -0.77
CDH3-209ENST00000569080 H0YIN7 160 aa10.26□□□□□ -0.77
CDH3-209ENST00000569080 KIF3CO14782 793 aa10.26□□□□□ -0.77
CDH3-209ENST00000569080 ZNF853P0CG23 659 aa10.26□□□□□ -0.77
CDH3-209ENST00000569080 MYL6BP14649 208 aa10.26□□□□□ -0.77
CDH3-209ENST00000569080 ST5P78524 1137 aa10.26□□□□□ -0.77
CDH3-209ENST00000569080 NBPF5PQ86XG9 351 aaPredicted RBP10.26□□□□□ -0.77
CDH3-209ENST00000569080 ZNF526Q8TF50 670 aaPredicted RBP10.26□□□□□ -0.77
CDH3-209ENST00000569080 NIP7Q9Y221 180 aaKnown RBP eCLIP10.26□□□□□ -0.77
CDH3-209ENST00000569080 LAMB2P55268 1798 aa10.25□□□□□ -0.77
CDH3-209ENST00000569080 ZNF316A6NFI3 1004 aaPredicted RBP10.25□□□□□ -0.77
CDH3-209ENST00000569080 APAF1O14727 1248 aa10.25□□□□□ -0.77
CDH3-209ENST00000569080 ANXA1P04083 346 aa10.25□□□□□ -0.77
CDH3-209ENST00000569080 STYK1Q6J9G0 422 aa10.25□□□□□ -0.77
CDH3-209ENST00000569080 ZBTB3Q9H5J0 574 aa10.25□□□□□ -0.77
CDH3-209ENST00000569080 RNF181Q9P0P0 153 aa10.25□□□□□ -0.77
CDH3-209ENST00000569080 NTSR2O95665 410 aa10.24□□□□□ -0.77
CDH3-209ENST00000569080 CRY2Q49AN0 593 aa10.24□□□□□ -0.77
CDH3-209ENST00000569080 PRPF40BQ6NWY9 871 aaKnown RBP10.24□□□□□ -0.77
CDH3-209ENST00000569080 GIGYF2Q6Y7W6 1299 aaKnown RBP10.24□□□□□ -0.77
CDH3-209ENST00000569080 KIF6Q6ZMV9 814 aa10.24□□□□□ -0.77
CDH3-209ENST00000569080 ZNF34Q8IZ26 560 aa10.24□□□□□ -0.77
CDH3-209ENST00000569080 NGEFQ8N5V2 710 aa10.24□□□□□ -0.77
CDH3-209ENST00000569080 CFAP44Q96MT7 982 aa10.24□□□□□ -0.77
CDH3-209ENST00000569080 LTBP3Q9NS15 1303 aa10.24□□□□□ -0.77
CDH3-209ENST00000569080 ZC3H4Q9UPT8 1303 aaKnown RBP10.24□□□□□ -0.77
CDH3-209ENST00000569080 HOXB7P09629 217 aa10.23□□□□□ -0.77
CDH3-209ENST00000569080 EIF2S2P20042 333 aaKnown RBP10.23□□□□□ -0.77
CDH3-209ENST00000569080 TPTE2Q6XPS3 522 aa10.23□□□□□ -0.77
CDH3-209ENST00000569080 C7orf43Q8WVR3 580 aa10.23□□□□□ -0.77
CDH3-209ENST00000569080 ZNF622Q969S3 477 aaKnown RBP eCLIP10.23□□□□□ -0.77
CDH3-209ENST00000569080 MASTLQ96GX5 879 aa10.23□□□□□ -0.77
CDH3-209ENST00000569080 NMRK2Q9NPI5 230 aa10.23□□□□□ -0.77
CDH3-209ENST00000569080 MBIPQ9NS73 344 aa10.23□□□□□ -0.77
CDH3-209ENST00000569080 DDX60Q8IY21 1712 aaKnown RBP10.23□□□□□ -0.77
CDH3-209ENST00000569080 WDR90Q96KV7 1748 aa10.22□□□□□ -0.77
CDH3-209ENST00000569080 FAM177BA6PVY3 158 aa10.22□□□□□ -0.77
CDH3-209ENST00000569080 C21orf2O43822 256 aa10.22□□□□□ -0.77
CDH3-209ENST00000569080 NPR1P16066 1061 aa10.22□□□□□ -0.77
CDH3-209ENST00000569080 LMNB1P20700 586 aa10.22□□□□□ -0.77
CDH3-209ENST00000569080 GPTP24298 496 aa10.22□□□□□ -0.77
CDH3-209ENST00000569080 SUSD4Q5VX71 490 aa10.22□□□□□ -0.77
CDH3-209ENST00000569080 NUTM1Q86Y26 1132 aa10.22□□□□□ -0.77
CDH3-209ENST00000569080 NECTIN2Q92692 538 aa10.22□□□□□ -0.77
CDH3-209ENST00000569080 CNKSR1Q969H4 720 aa10.22□□□□□ -0.77
CDH3-209ENST00000569080 DDX21Q9NR30 783 aaKnown RBP eCLIP10.22□□□□□ -0.77
CDH3-209ENST00000569080 IFT57Q9NWB7 429 aa10.22□□□□□ -0.77
CDH3-209ENST00000569080 CHPF2Q9P2E5 772 aa10.22□□□□□ -0.77
CDH3-209ENST00000569080 NPHP1O15259 732 aa10.21□□□□□ -0.77
CDH3-209ENST00000569080 ERFEQ4G0M1 354 aa10.21□□□□□ -0.77
CDH3-209ENST00000569080 HDGFL1Q5TGJ6 251 aa10.21□□□□□ -0.77
CDH3-209ENST00000569080 C3orf67Q6ZVT6 689 aa10.21□□□□□ -0.77
CDH3-209ENST00000569080 COPS6Q7L5N1 327 aa10.21□□□□□ -0.77
CDH3-209ENST00000569080 XAGE3Q8WTP9 111 aa10.21□□□□□ -0.77
CDH3-209ENST00000569080 NYXQ9GZU5 481 aa10.21□□□□□ -0.77
CDH3-209ENST00000569080 LAS1LQ9Y4W2 734 aaKnown RBP10.21□□□□□ -0.77
CDH3-209ENST00000569080 SENP3-EIF4A1A0A087X0R7 540 aa10.2□□□□□ -0.78
CDH3-209ENST00000569080 COL4A5P29400 1685 aa10.2□□□□□ -0.78
CDH3-209ENST00000569080 PARP10Q53GL7 1025 aa10.2□□□□□ -0.78
CDH3-209ENST00000569080 DUSP27Q5VZP5 1158 aa10.2□□□□□ -0.78
CDH3-209ENST00000569080 SLC51AQ86UW1 340 aa10.2□□□□□ -0.78
CDH3-209ENST00000569080 TAOK3Q9H2K8 898 aa10.2□□□□□ -0.78
CDH3-209ENST00000569080 LRRC37AA6NMS7 1700 aa10.19□□□□□ -0.78
CDH3-209ENST00000569080 COL4A1P02462 1669 aa10.19□□□□□ -0.78
CDH3-209ENST00000569080 RNF123Q5XPI4 1314 aa10.19□□□□□ -0.78
CDH3-209ENST00000569080 HOXA10P31260 410 aaPredicted RBP10.19□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms