RNA–Protein interactions for RNA: ENST00000567992.1

CLK3-220, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 603 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-220ENST00000567992 RGL2O15211 777 aa12.74□□□□□ -0.37
CLK3-220ENST00000567992 ANXA1P04083 346 aa12.74□□□□□ -0.37
CLK3-220ENST00000567992 MYL6BP14649 208 aa12.74□□□□□ -0.37
CLK3-220ENST00000567992 TBC1D9BQ66K14 1250 aa12.74□□□□□ -0.37
CLK3-220ENST00000567992 TTLL7Q6ZT98 887 aa12.74□□□□□ -0.37
CLK3-220ENST00000567992 NGEFQ8N5V2 710 aa12.74□□□□□ -0.37
CLK3-220ENST00000567992 COL11A2P13942 1736 aaPredicted RBP12.74□□□□□ -0.37
CLK3-220ENST00000567992 CARMIL3Q8ND23 1372 aa12.73□□□□□ -0.37
CLK3-220ENST00000567992 HDGFL1Q5TGJ6 251 aa12.73□□□□□ -0.37
CLK3-220ENST00000567992 TSPYL6Q8N831 410 aa12.73□□□□□ -0.37
CLK3-220ENST00000567992 NECTIN2Q92692 538 aa12.73□□□□□ -0.37
CLK3-220ENST00000567992 CHPF2Q9P2E5 772 aa12.73□□□□□ -0.37
CLK3-220ENST00000567992 PARP3Q9Y6F1 533 aa12.73□□□□□ -0.37
CLK3-220ENST00000567992 ATP10DQ9P241 1426 aa12.72□□□□□ -0.37
CLK3-220ENST00000567992 ARFGEF2Q9Y6D5 1785 aa12.72□□□□□ -0.37
CLK3-220ENST00000567992 MAP3K15Q6ZN16 1313 aa12.72□□□□□ -0.37
CLK3-220ENST00000567992 HLFQ16534 295 aa12.72□□□□□ -0.37
CLK3-220ENST00000567992 CLEC4GQ6UXB4 293 aa12.72□□□□□ -0.37
CLK3-220ENST00000567992 DDX21Q9NR30 783 aaKnown RBP eCLIP12.72□□□□□ -0.37
CLK3-220ENST00000567992 ERVV-1B6SEH8 477 aa12.71□□□□□ -0.37
CLK3-220ENST00000567992 ELL2O00472 640 aaPredicted RBP12.71□□□□□ -0.37
CLK3-220ENST00000567992 BICDL1Q6ZP65 573 aa12.71□□□□□ -0.37
CLK3-220ENST00000567992 NPM2Q86SE8 214 aaKnown RBP12.71□□□□□ -0.37
CLK3-220ENST00000567992 TNRC6CQ9HCJ0 1690 aaKnown RBP12.7□□□□□ -0.38
CLK3-220ENST00000567992 SERPINB2P05120 415 aa12.7□□□□□ -0.38
CLK3-220ENST00000567992 KIF6Q6ZMV9 814 aa12.7□□□□□ -0.38
CLK3-220ENST00000567992 ZBTB3Q9H5J0 574 aa12.7□□□□□ -0.38
CLK3-220ENST00000567992 PRR5LQ6MZQ0 368 aa12.69□□□□□ -0.38
CLK3-220ENST00000567992 COPS6Q7L5N1 327 aa12.69□□□□□ -0.38
CLK3-220ENST00000567992 XAGE3Q8WTP9 111 aa12.69□□□□□ -0.38
CLK3-220ENST00000567992 DBF4Q9UBU7 674 aaPredicted RBP12.69□□□□□ -0.38
CLK3-220ENST00000567992 ZNF652Q9Y2D9 606 aa12.69□□□□□ -0.38
CLK3-220ENST00000567992 UBN2Q6ZU65 1347 aa12.68□□□□□ -0.38
CLK3-220ENST00000567992 ARFGEF1Q9Y6D6 1849 aa12.68□□□□□ -0.38
CLK3-220ENST00000567992 YBX3P16989 372 aaKnown RBP eCLIP12.68□□□□□ -0.38
CLK3-220ENST00000567992 TWISTNBQ3B726 338 aaPredicted RBP12.68□□□□□ -0.38
CLK3-220ENST00000567992 SETDB2Q96T68 719 aa12.68□□□□□ -0.38
CLK3-220ENST00000567992 IBTKQ9P2D0 1353 aaPredicted RBP12.68□□□□□ -0.38
CLK3-220ENST00000567992 CACNA1FO60840 1977 aa12.67□□□□□ -0.38
CLK3-220ENST00000567992 DPEP1P16444 411 aa12.67□□□□□ -0.38
CLK3-220ENST00000567992 KCNA3P22001 575 aa12.67□□□□□ -0.38
CLK3-220ENST00000567992 TGFB2P61812 414 aa12.67□□□□□ -0.38
CLK3-220ENST00000567992 EXOSC9Q06265 439 aaKnown RBP12.67□□□□□ -0.38
CLK3-220ENST00000567992 GIGYF2Q6Y7W6 1299 aaKnown RBP12.67□□□□□ -0.38
CLK3-220ENST00000567992 ZNF34Q8IZ26 560 aa12.67□□□□□ -0.38
CLK3-220ENST00000567992 NIP7Q9Y221 180 aaKnown RBP eCLIP12.67□□□□□ -0.38
CLK3-220ENST00000567992 A0A0G2JLW4 131 aa12.66□□□□□ -0.38
CLK3-220ENST00000567992 VAMP4O75379 141 aa12.66□□□□□ -0.38
CLK3-220ENST00000567992 GOLGA2Q08379 1002 aa12.66□□□□□ -0.38
CLK3-220ENST00000567992 AIMP1Q12904 312 aaKnown RBP12.66□□□□□ -0.38
CLK3-220ENST00000567992 CNBD1Q8NA66 436 aa12.66□□□□□ -0.38
CLK3-220ENST00000567992 MYH16Q9H6N6 1097 aa12.66□□□□□ -0.38
CLK3-220ENST00000567992 PHAXQ9H814 394 aaKnown RBP12.66□□□□□ -0.38
CLK3-220ENST00000567992 HYPKQ9NX55 129 aa12.66□□□□□ -0.38
CLK3-220ENST00000567992 ABCC12Q96J65 1359 aa12.66□□□□□ -0.38
CLK3-220ENST00000567992 CHRNA5P30532 468 aa12.65□□□□□ -0.38
CLK3-220ENST00000567992 SLFN5Q08AF3 891 aa12.65□□□□□ -0.38
CLK3-220ENST00000567992 CCDC30Q5VVM6 783 aa12.65□□□□□ -0.38
CLK3-220ENST00000567992 CCDC24Q8N4L8 307 aa12.65□□□□□ -0.38
CLK3-220ENST00000567992 CHD4Q14839 1912 aa12.64□□□□□ -0.39
CLK3-220ENST00000567992 RIC1Q4ADV7 1423 aa12.64□□□□□ -0.39
CLK3-220ENST00000567992 LAMB2P55268 1798 aa12.64□□□□□ -0.39
CLK3-220ENST00000567992 CACNA1SQ13698 1873 aa12.64□□□□□ -0.39
CLK3-220ENST00000567992 TCERG1O14776 1098 aaKnown RBP12.64□□□□□ -0.39
CLK3-220ENST00000567992 NTSR2O95665 410 aa12.64□□□□□ -0.39
CLK3-220ENST00000567992 GPTP24298 496 aa12.64□□□□□ -0.39
CLK3-220ENST00000567992 NBPF5PQ86XG9 351 aaPredicted RBP12.64□□□□□ -0.39
CLK3-220ENST00000567992 TRMT2AQ8IZ69 625 aaKnown RBP12.64□□□□□ -0.39
CLK3-220ENST00000567992 PLBD2Q8NHP8 589 aa12.64□□□□□ -0.39
CLK3-220ENST00000567992 CDCA7LQ96GN5 454 aa12.64□□□□□ -0.39
CLK3-220ENST00000567992 BRIP1Q9BX63 1249 aa12.64□□□□□ -0.39
CLK3-220ENST00000567992 WWC3Q9ULE0 1092 aa12.64□□□□□ -0.39
CLK3-220ENST00000567992 DDX60Q8IY21 1712 aaKnown RBP12.64□□□□□ -0.39
CLK3-220ENST00000567992 E9PSI1 815 aa12.63□□□□□ -0.39
CLK3-220ENST00000567992 GPR162Q16538 588 aa12.63□□□□□ -0.39
CLK3-220ENST00000567992 SUSD4Q5VX71 490 aa12.63□□□□□ -0.39
CLK3-220ENST00000567992 ANKRD13DQ6ZTN6 518 aa12.63□□□□□ -0.39
CLK3-220ENST00000567992 G2E3Q7L622 706 aa12.63□□□□□ -0.39
CLK3-220ENST00000567992 ADCY9O60503 1353 aa12.63□□□□□ -0.39
CLK3-220ENST00000567992 FAM177BA6PVY3 158 aa12.62□□□□□ -0.39
CLK3-220ENST00000567992 ST5P78524 1137 aa12.62□□□□□ -0.39
CLK3-220ENST00000567992 TCIRG1Q13488 830 aa12.62□□□□□ -0.39
CLK3-220ENST00000567992 HSP90AB3PQ58FF7 597 aa12.62□□□□□ -0.39
CLK3-220ENST00000567992 NLRP10Q86W26 655 aa12.62□□□□□ -0.39
CLK3-220ENST00000567992 C2CD5Q86YS7 1000 aa12.62□□□□□ -0.39
CLK3-220ENST00000567992 PELP1Q8IZL8 1130 aaKnown RBP12.62□□□□□ -0.39
CLK3-220ENST00000567992 ISCA1Q9BUE6 129 aa12.62□□□□□ -0.39
CLK3-220ENST00000567992 KLRG2A4D1S0 409 aaPredicted RBP12.61□□□□□ -0.39
CLK3-220ENST00000567992 ERFEQ4G0M1 354 aa12.61□□□□□ -0.39
CLK3-220ENST00000567992 PARP10Q53GL7 1025 aa12.61□□□□□ -0.39
CLK3-220ENST00000567992 TPTE2Q6XPS3 522 aa12.61□□□□□ -0.39
CLK3-220ENST00000567992 NUTM1Q86Y26 1132 aa12.61□□□□□ -0.39
CLK3-220ENST00000567992 STK31Q9BXU1 1019 aa12.61□□□□□ -0.39
CLK3-220ENST00000567992 CHMP4AQ9BY43 222 aa12.61□□□□□ -0.39
CLK3-220ENST00000567992 SLX4Q8IY92 1834 aa12.6□□□□□ -0.39
CLK3-220ENST00000567992 SLC4A2P04920 1241 aa12.6□□□□□ -0.39
CLK3-220ENST00000567992 PDE6BP35913 854 aa12.6□□□□□ -0.39
CLK3-220ENST00000567992 NYXQ9GZU5 481 aa12.6□□□□□ -0.39
CLK3-220ENST00000567992 PIM2Q9P1W9 311 aa12.6□□□□□ -0.39
CLK3-220ENST00000567992 DCAF8L1A6NGE4 600 aa12.59□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms