RNA–Protein interactions for RNA: ENST00000567223.6

SMPD3-209, Transcript of sphingomyelin phosphodiesterase 3, humanhuman

TSL 2

Gene SMPD3, Length 530 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD3-209ENST00000567223 ADAMTS8Q9UP79 889 aa24.48■■□□□ 1.51
SMPD3-209ENST00000567223 KLRG2A4D1S0 409 aaPredicted RBP24.47■■□□□ 1.51
SMPD3-209ENST00000567223 SBF1O95248 1867 aa24.47■■□□□ 1.51
SMPD3-209ENST00000567223 C9orf131Q5VYM1 1079 aa24.46■■□□□ 1.51
SMPD3-209ENST00000567223 ARFGEF2Q9Y6D5 1785 aa24.46■■□□□ 1.51
SMPD3-209ENST00000567223 IBTKQ9P2D0 1353 aaPredicted RBP24.45■■□□□ 1.5
SMPD3-209ENST00000567223 MAP3K15Q6ZN16 1313 aa24.45■■□□□ 1.5
SMPD3-209ENST00000567223 CHL1O00533 1208 aa24.45■■□□□ 1.5
SMPD3-209ENST00000567223 SRGNP10124 158 aa24.45■■□□□ 1.5
SMPD3-209ENST00000567223 STYK1Q6J9G0 422 aa24.45■■□□□ 1.5
SMPD3-209ENST00000567223 TPTE2Q6XPS3 522 aa24.45■■□□□ 1.5
SMPD3-209ENST00000567223 NBPF5PQ86XG9 351 aaPredicted RBP24.45■■□□□ 1.5
SMPD3-209ENST00000567223 TRIM35Q9UPQ4 493 aa24.45■■□□□ 1.5
SMPD3-209ENST00000567223 LRP10Q7Z4F1 713 aa24.44■■□□□ 1.5
SMPD3-209ENST00000567223 NIP7Q9Y221 180 aaKnown RBP eCLIP24.44■■□□□ 1.5
SMPD3-209ENST00000567223 KIF3CO14782 793 aa24.43■■□□□ 1.5
SMPD3-209ENST00000567223 CCDC146Q8IYE0 955 aa24.43■■□□□ 1.5
SMPD3-209ENST00000567223 CNKSR1Q969H4 720 aa24.43■■□□□ 1.5
SMPD3-209ENST00000567223 RIC1Q4ADV7 1423 aa24.43■■□□□ 1.5
SMPD3-209ENST00000567223 NPHP1O15259 732 aa24.42■■□□□ 1.5
SMPD3-209ENST00000567223 HLFQ16534 295 aa24.42■■□□□ 1.5
SMPD3-209ENST00000567223 MASTLQ96GX5 879 aa24.42■■□□□ 1.5
SMPD3-209ENST00000567223 NUP98P52948 1817 aa24.42■■□□□ 1.5
SMPD3-209ENST00000567223 LMNB1P20700 586 aa24.41■■□□□ 1.5
SMPD3-209ENST00000567223 KIF6Q6ZMV9 814 aa24.41■■□□□ 1.5
SMPD3-209ENST00000567223 ZNF526Q8TF50 670 aaPredicted RBP24.41■■□□□ 1.5
SMPD3-209ENST00000567223 RNF181Q9P0P0 153 aa24.41■■□□□ 1.5
SMPD3-209ENST00000567223 LTBP3Q9NS15 1303 aa24.4■■□□□ 1.5
SMPD3-209ENST00000567223 HOXB7P09629 217 aa24.4■■□□□ 1.5
SMPD3-209ENST00000567223 PDIA6Q15084 440 aa24.4■■□□□ 1.5
SMPD3-209ENST00000567223 NYXQ9GZU5 481 aa24.4■■□□□ 1.5
SMPD3-209ENST00000567223 RRP7AQ9Y3A4 280 aaKnown RBP24.4■■□□□ 1.5
SMPD3-209ENST00000567223 FER1L6Q2WGJ9 1857 aa24.39■■□□□ 1.5
SMPD3-209ENST00000567223 NFKBIEO00221 500 aa24.39■■□□□ 1.49
SMPD3-209ENST00000567223 SOGA3Q5TF21 947 aa24.39■■□□□ 1.49
SMPD3-209ENST00000567223 ZNF622Q969S3 477 aaKnown RBP eCLIP24.39■■□□□ 1.49
SMPD3-209ENST00000567223 GIGYF2Q6Y7W6 1299 aaKnown RBP24.38■■□□□ 1.49
SMPD3-209ENST00000567223 TTLL7Q6ZT98 887 aa24.38■■□□□ 1.49
SMPD3-209ENST00000567223 CFAP44Q96MT7 982 aa24.38■■□□□ 1.49
SMPD3-209ENST00000567223 KDM2BQ8NHM5 1336 aa24.37■■□□□ 1.49
SMPD3-209ENST00000567223 CEP350Q5VT06 3117 aa24.37■■□□□ 1.49
SMPD3-209ENST00000567223 MYL6BP14649 208 aa24.37■■□□□ 1.49
SMPD3-209ENST00000567223 NPR1P16066 1061 aa24.37■■□□□ 1.49
SMPD3-209ENST00000567223 NEUROD2Q15784 382 aa24.37■■□□□ 1.49
SMPD3-209ENST00000567223 CCDC24Q8N4L8 307 aa24.37■■□□□ 1.49
SMPD3-209ENST00000567223 TNRC6CQ9HCJ0 1690 aaKnown RBP24.37■■□□□ 1.49
SMPD3-209ENST00000567223 PRPF40BQ6NWY9 871 aaKnown RBP24.36■■□□□ 1.49
SMPD3-209ENST00000567223 ZNF34Q8IZ26 560 aa24.36■■□□□ 1.49
SMPD3-209ENST00000567223 SENP3-EIF4A1A0A087X0R7 540 aa24.35■■□□□ 1.49
SMPD3-209ENST00000567223 PRELPP51888 382 aa24.35■■□□□ 1.49
SMPD3-209ENST00000567223 RASSF7Q02833 373 aa24.35■■□□□ 1.49
SMPD3-209ENST00000567223 CRY2Q49AN0 593 aa24.35■■□□□ 1.49
SMPD3-209ENST00000567223 SLX4Q8IY92 1834 aa24.35■■□□□ 1.49
SMPD3-209ENST00000567223 C21orf2O43822 256 aa24.34■■□□□ 1.49
SMPD3-209ENST00000567223 TOMM70O94826 608 aa24.34■■□□□ 1.49
SMPD3-209ENST00000567223 C7orf43Q8WVR3 580 aa24.34■■□□□ 1.49
SMPD3-209ENST00000567223 UBN2Q6ZU65 1347 aa24.34■■□□□ 1.49
SMPD3-209ENST00000567223 TIAM2Q8IVF5 1701 aa24.33■■□□□ 1.49
SMPD3-209ENST00000567223 ZNF853P0CG23 659 aa24.33■■□□□ 1.49
SMPD3-209ENST00000567223 CALD1Q05682 793 aaKnown RBP24.33■■□□□ 1.49
SMPD3-209ENST00000567223 PARP10Q53GL7 1025 aa24.33■■□□□ 1.49
SMPD3-209ENST00000567223 NGEFQ8N5V2 710 aa24.33■■□□□ 1.49
SMPD3-209ENST00000567223 DDX21Q9NR30 783 aaKnown RBP eCLIP24.33■■□□□ 1.49
SMPD3-209ENST00000567223 RNF123Q5XPI4 1314 aa24.33■■□□□ 1.48
SMPD3-209ENST00000567223 EIF2S2P20042 333 aaKnown RBP24.32■■□□□ 1.48
SMPD3-209ENST00000567223 ZBTB3Q9H5J0 574 aa24.32■■□□□ 1.48
SMPD3-209ENST00000567223 DICER1Q9UPY3 1922 aaKnown RBP24.31■■□□□ 1.48
SMPD3-209ENST00000567223 ALDH1B1P30837 517 aa24.31■■□□□ 1.48
SMPD3-209ENST00000567223 NMRK2Q9NPI5 230 aa24.31■■□□□ 1.48
SMPD3-209ENST00000567223 ABCC12Q96J65 1359 aa24.3■■□□□ 1.48
SMPD3-209ENST00000567223 GLTPD2A6NH11 291 aa24.3■■□□□ 1.48
SMPD3-209ENST00000567223 APAF1O14727 1248 aa24.3■■□□□ 1.48
SMPD3-209ENST00000567223 NTSR2O95665 410 aa24.3■■□□□ 1.48
SMPD3-209ENST00000567223 GTF2E1P29083 439 aaPredicted RBP24.3■■□□□ 1.48
SMPD3-209ENST00000567223 PROSER3Q2NL68 480 aa24.3■■□□□ 1.48
SMPD3-209ENST00000567223 NCBP3Q53F19 620 aaKnown RBP24.3■■□□□ 1.48
SMPD3-209ENST00000567223 TAOK3Q9H2K8 898 aa24.3■■□□□ 1.48
SMPD3-209ENST00000567223 IFT57Q9NWB7 429 aa24.3■■□□□ 1.48
SMPD3-209ENST00000567223 ANKRD36CQ5JPF3 1778 aa24.29■■□□□ 1.48
SMPD3-209ENST00000567223 ZNF316A6NFI3 1004 aaPredicted RBP24.29■■□□□ 1.48
SMPD3-209ENST00000567223 HSPA6P17066 643 aa24.29■■□□□ 1.48
SMPD3-209ENST00000567223 HSP90AB3PQ58FF7 597 aa24.29■■□□□ 1.48
SMPD3-209ENST00000567223 PPP1R42Q7Z4L9 355 aa24.29■■□□□ 1.48
SMPD3-209ENST00000567223 CACNA1SQ13698 1873 aa24.29■■□□□ 1.48
SMPD3-209ENST00000567223 HOXA10P31260 410 aaPredicted RBP24.28■■□□□ 1.48
SMPD3-209ENST00000567223 CCDC93Q567U6 631 aa24.28■■□□□ 1.48
SMPD3-209ENST00000567223 SUSD4Q5VX71 490 aa24.28■■□□□ 1.48
SMPD3-209ENST00000567223 RBM46Q8TBY0 533 aaKnown RBP24.28■■□□□ 1.48
SMPD3-209ENST00000567223 CCDC88AQ3V6T2 1871 aa24.28■■□□□ 1.48
SMPD3-209ENST00000567223 SNED1Q8TER0 1413 aa24.27■■□□□ 1.48
SMPD3-209ENST00000567223 GNAI1P63096 354 aa24.27■■□□□ 1.48
SMPD3-209ENST00000567223 KRT24Q2M2I5 525 aa24.27■■□□□ 1.48
SMPD3-209ENST00000567223 COPS6Q7L5N1 327 aa24.27■■□□□ 1.48
SMPD3-209ENST00000567223 MBIPQ9NS73 344 aa24.27■■□□□ 1.48
SMPD3-209ENST00000567223 DBF4Q9UBU7 674 aaPredicted RBP24.27■■□□□ 1.48
SMPD3-209ENST00000567223 ERFEQ4G0M1 354 aa24.26■■□□□ 1.47
SMPD3-209ENST00000567223 SLC10A5Q5PT55 438 aa24.26■■□□□ 1.47
SMPD3-209ENST00000567223 HDGFL1Q5TGJ6 251 aa24.26■■□□□ 1.47
SMPD3-209ENST00000567223 LAS1LQ9Y4W2 734 aaKnown RBP24.26■■□□□ 1.47
SMPD3-209ENST00000567223 WDR90Q96KV7 1748 aa24.25■■□□□ 1.47
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms