RNA–Protein interactions for RNA: ENST00000566756.5

CMTM3-213, Transcript of CKLF like MARVEL transmembrane domain containing 3, humanhuman

TSL 2

Gene CMTM3, Length 1,950 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CMTM3-213ENST00000566756 NEK4P51957 841 aa20.37■□□□□ 0.85
CMTM3-213ENST00000566756 NKX1-1Q15270 411 aaPredicted RBP20.37■□□□□ 0.85
CMTM3-213ENST00000566756 ZNF790Q6PG37 636 aa20.37■□□□□ 0.85
CMTM3-213ENST00000566756 ANP32BQ92688 251 aaKnown RBP20.37■□□□□ 0.85
CMTM3-213ENST00000566756 TMX3Q96JJ7 454 aa20.37■□□□□ 0.85
CMTM3-213ENST00000566756 ZDHHC9Q9Y397 364 aa20.37■□□□□ 0.85
CMTM3-213ENST00000566756 NFATC2IPQ8NCF5 419 aa20.36■□□□□ 0.85
CMTM3-213ENST00000566756 PLCH1Q4KWH8 1693 aa20.36■□□□□ 0.85
CMTM3-213ENST00000566756 PKP1Q13835 747 aa20.35■□□□□ 0.85
CMTM3-213ENST00000566756 ZSCAN23Q3MJ62 389 aa20.34■□□□□ 0.85
CMTM3-213ENST00000566756 NECTIN2Q92692 538 aa20.34■□□□□ 0.85
CMTM3-213ENST00000566756 EIF2S2P20042 333 aaKnown RBP20.34■□□□□ 0.85
CMTM3-213ENST00000566756 DBF4Q9UBU7 674 aaPredicted RBP20.34■□□□□ 0.85
CMTM3-213ENST00000566756 TRIM6-TRIM34B2RNG4 842 aa20.33■□□□□ 0.84
CMTM3-213ENST00000566756 ERVV-2B6SEH9 535 aa20.33■□□□□ 0.84
CMTM3-213ENST00000566756 BRD1O95696 1058 aa20.33■□□□□ 0.84
CMTM3-213ENST00000566756 MBD3O95983 291 aa20.32■□□□□ 0.84
CMTM3-213ENST00000566756 HSP90AB4PQ58FF6 505 aa20.32■□□□□ 0.84
CMTM3-213ENST00000566756 CAVIN1Q6NZI2 390 aaKnown RBP20.32■□□□□ 0.84
CMTM3-213ENST00000566756 RILPL2Q969X0 211 aa20.32■□□□□ 0.84
CMTM3-213ENST00000566756 KIF1BPQ96EK5 621 aa20.32■□□□□ 0.84
CMTM3-213ENST00000566756 ANO2Q9NQ90 1003 aa20.32■□□□□ 0.84
CMTM3-213ENST00000566756 CHPF2Q9P2E5 772 aa20.32■□□□□ 0.84
CMTM3-213ENST00000566756 DISP2A7MBM2 1401 aa20.31■□□□□ 0.84
CMTM3-213ENST00000566756 C5P01031 1676 aa20.31■□□□□ 0.84
CMTM3-213ENST00000566756 WNK3Q9BYP7 1800 aa20.31■□□□□ 0.84
CMTM3-213ENST00000566756 CABP4P57796 275 aa20.31■□□□□ 0.84
CMTM3-213ENST00000566756 HS1BP3Q53T59 392 aa20.31■□□□□ 0.84
CMTM3-213ENST00000566756 USP42Q9H9J4 1324 aaKnown RBP20.31■□□□□ 0.84
CMTM3-213ENST00000566756 HSPA4P34932 840 aa20.3■□□□□ 0.84
CMTM3-213ENST00000566756 TSHZ3Q63HK5 1081 aa20.3■□□□□ 0.84
CMTM3-213ENST00000566756 NRAPQ86VF7 1730 aa20.3■□□□□ 0.84
CMTM3-213ENST00000566756 PHAXQ9H814 394 aaKnown RBP20.3■□□□□ 0.84
CMTM3-213ENST00000566756 PRPF40AO75400 957 aaKnown RBP20.3■□□□□ 0.84
CMTM3-213ENST00000566756 PPP1R42Q7Z4L9 355 aa20.3■□□□□ 0.84
CMTM3-213ENST00000566756 PALD1Q9ULE6 856 aa20.3■□□□□ 0.84
CMTM3-213ENST00000566756 NWD2Q9ULI1 1742 aa20.29■□□□□ 0.84
CMTM3-213ENST00000566756 UBR2Q8IWV8 1755 aa20.29■□□□□ 0.84
CMTM3-213ENST00000566756 SLC39A6Q13433 755 aa20.29■□□□□ 0.84
CMTM3-213ENST00000566756 RHPN1Q8TCX5 695 aa20.29■□□□□ 0.84
CMTM3-213ENST00000566756 GPT2Q8TD30 523 aa20.29■□□□□ 0.84
CMTM3-213ENST00000566756 ERBB4Q15303 1308 aa20.29■□□□□ 0.84
CMTM3-213ENST00000566756 PAPPAQ13219 1627 aa20.29■□□□□ 0.84
CMTM3-213ENST00000566756 PIP4K2BP78356 416 aa20.28■□□□□ 0.84
CMTM3-213ENST00000566756 BEND3Q5T5X7 828 aa20.28■□□□□ 0.84
CMTM3-213ENST00000566756 TTC5Q8N0Z6 440 aa20.28■□□□□ 0.84
CMTM3-213ENST00000566756 PI4K2BQ8TCG2 481 aa20.28■□□□□ 0.84
CMTM3-213ENST00000566756 MTX1Q13505 466 aa20.28■□□□□ 0.84
CMTM3-213ENST00000566756 DNAAF4Q8WXU2 420 aa20.28■□□□□ 0.84
CMTM3-213ENST00000566756 HYPKQ9NX55 129 aa20.28■□□□□ 0.84
CMTM3-213ENST00000566756 LAMB4A4D0S4 1761 aa20.27■□□□□ 0.84
CMTM3-213ENST00000566756 SURF6O75683 361 aaKnown RBP20.27■□□□□ 0.84
CMTM3-213ENST00000566756 UNC5CLQ8IV45 518 aa20.27■□□□□ 0.84
CMTM3-213ENST00000566756 FMNL2Q96PY5 1086 aa20.27■□□□□ 0.84
CMTM3-213ENST00000566756 HDAC5Q9UQL6 1122 aa20.27■□□□□ 0.84
CMTM3-213ENST00000566756 UBAP1LF5GYI3 381 aa20.26■□□□□ 0.83
CMTM3-213ENST00000566756 NCLP19338 710 aaKnown RBP20.26■□□□□ 0.83
CMTM3-213ENST00000566756 ZNF496Q96IT1 587 aaPredicted RBP20.26■□□□□ 0.83
CMTM3-213ENST00000566756 DDX21Q9NR30 783 aaKnown RBP eCLIP20.26■□□□□ 0.83
CMTM3-213ENST00000566756 TTC41PQ6P2S7 1318 aa20.26■□□□□ 0.83
CMTM3-213ENST00000566756 RAD50Q92878 1312 aa20.26■□□□□ 0.83
CMTM3-213ENST00000566756 GLI3P10071 1580 aa20.26■□□□□ 0.83
CMTM3-213ENST00000566756 SGSM2O43147 1006 aa20.26■□□□□ 0.83
CMTM3-213ENST00000566756 SNRPA1P09661 255 aaKnown RBP20.26■□□□□ 0.83
CMTM3-213ENST00000566756 LRSAM1Q6UWE0 723 aa20.26■□□□□ 0.83
CMTM3-213ENST00000566756 ZSCAN30Q86W11 494 aa20.26■□□□□ 0.83
CMTM3-213ENST00000566756 CNTROBQ8N137 903 aa20.26■□□□□ 0.83
CMTM3-213ENST00000566756 TOGARAM1Q9Y4F4 1720 aa20.26■□□□□ 0.83
CMTM3-213ENST00000566756 PRAMEF22A3QJZ6 481 aa20.25■□□□□ 0.83
CMTM3-213ENST00000566756 PDLIM2Q96JY6 352 aa20.25■□□□□ 0.83
CMTM3-213ENST00000566756 SRGAP3O43295 1099 aa20.25■□□□□ 0.83
CMTM3-213ENST00000566756 DDX54Q8TDD1 881 aaKnown RBP20.25■□□□□ 0.83
CMTM3-213ENST00000566756 IL1RAPL2Q9NP60 686 aa20.25■□□□□ 0.83
CMTM3-213ENST00000566756 CDCA7Q9BWT1 371 aaPredicted RBP20.24■□□□□ 0.83
CMTM3-213ENST00000566756 THRAP3Q9Y2W1 955 aaKnown RBP20.24■□□□□ 0.83
CMTM3-213ENST00000566756 WDR33Q9C0J8 1336 aaKnown RBP20.23■□□□□ 0.83
CMTM3-213ENST00000566756 ALDH1L1O75891 902 aa20.23■□□□□ 0.83
CMTM3-213ENST00000566756 PDIA6Q15084 440 aa20.23■□□□□ 0.83
CMTM3-213ENST00000566756 LRP6O75581 1613 aa20.23■□□□□ 0.83
CMTM3-213ENST00000566756 PI4KAP2A4QPH2 592 aa20.23■□□□□ 0.83
CMTM3-213ENST00000566756 NUTM1Q86Y26 1132 aa20.23■□□□□ 0.83
CMTM3-213ENST00000566756 PI4KAP1Q8N8J0 262 aa20.23■□□□□ 0.83
CMTM3-213ENST00000566756 ADCY9O60503 1353 aa20.22■□□□□ 0.83
CMTM3-213ENST00000566756 GLRX3O76003 335 aaKnown RBP20.22■□□□□ 0.83
CMTM3-213ENST00000566756 ADAMTS2O95450 1211 aa20.22■□□□□ 0.83
CMTM3-213ENST00000566756 NBPF7P0C2Y1 421 aaPredicted RBP20.22■□□□□ 0.83
CMTM3-213ENST00000566756 PRIM1P49642 420 aaKnown RBP20.22■□□□□ 0.83
CMTM3-213ENST00000566756 KLHL34Q8N239 644 aa20.22■□□□□ 0.83
CMTM3-213ENST00000566756 SYAP1Q96A49 352 aaPredicted RBP20.22■□□□□ 0.83
CMTM3-213ENST00000566756 RBSNQ9H1K0 784 aa20.22■□□□□ 0.83
CMTM3-213ENST00000566756 TMEM63CQ9P1W3 806 aa20.22■□□□□ 0.83
CMTM3-213ENST00000566756 ITGB4P16144 1822 aa20.22■□□□□ 0.83
CMTM3-213ENST00000566756 SLIT2O94813 1529 aa20.22■□□□□ 0.83
CMTM3-213ENST00000566756 ANXA1P04083 346 aa20.21■□□□□ 0.83
CMTM3-213ENST00000566756 KSR2Q6VAB6 950 aa20.21■□□□□ 0.83
CMTM3-213ENST00000566756 NAP1L5Q96NT1 182 aaPredicted RBP20.21■□□□□ 0.83
CMTM3-213ENST00000566756 TNS2Q63HR2 1409 aa20.21■□□□□ 0.83
CMTM3-213ENST00000566756 KCPQ6ZWJ8 1503 aa20.21■□□□□ 0.83
CMTM3-213ENST00000566756 PROSER3Q2NL68 480 aa20.21■□□□□ 0.83
CMTM3-213ENST00000566756 LSG1Q9H089 658 aaKnown RBP20.21■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 10.8 ms