RNA–Protein interactions for RNA: ENST00000565778.6

CLN3-219, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-219ENST00000565778 LAS1LQ9Y4W2 734 aaKnown RBP27.17■■□□□ 1.94
CLN3-219ENST00000565778 HLFQ16534 295 aa27.16■■□□□ 1.94
CLN3-219ENST00000565778 SCN7AQ01118 1682 aa27.16■■□□□ 1.94
CLN3-219ENST00000565778 BRCA1P38398 1863 aaKnown RBP27.16■■□□□ 1.94
CLN3-219ENST00000565778 RGL2O15211 777 aa27.15■■□□□ 1.94
CLN3-219ENST00000565778 EIF2S2P20042 333 aaKnown RBP27.15■■□□□ 1.94
CLN3-219ENST00000565778 TPTE2Q6XPS3 522 aa27.15■■□□□ 1.94
CLN3-219ENST00000565778 TRIM35Q9UPQ4 493 aa27.15■■□□□ 1.94
CLN3-219ENST00000565778 KDM3BQ7LBC6 1761 aa27.14■■□□□ 1.94
CLN3-219ENST00000565778 FAM177BA6PVY3 158 aa27.14■■□□□ 1.94
CLN3-219ENST00000565778 KIF6Q6ZMV9 814 aa27.13■■□□□ 1.93
CLN3-219ENST00000565778 ERVV-1B6SEH8 477 aa27.12■■□□□ 1.93
CLN3-219ENST00000565778 TTLL7Q6ZT98 887 aa27.12■■□□□ 1.93
CLN3-219ENST00000565778 RNF181Q9P0P0 153 aa27.12■■□□□ 1.93
CLN3-219ENST00000565778 ARFGEF1Q9Y6D6 1849 aa27.11■■□□□ 1.93
CLN3-219ENST00000565778 ZNF316A6NFI3 1004 aaPredicted RBP27.11■■□□□ 1.93
CLN3-219ENST00000565778 GTF2E1P29083 439 aaPredicted RBP27.11■■□□□ 1.93
CLN3-219ENST00000565778 ZNF219Q9P2Y4 722 aaPredicted RBP27.11■■□□□ 1.93
CLN3-219ENST00000565778 MAP3K15Q6ZN16 1313 aa27.11■■□□□ 1.93
CLN3-219ENST00000565778 CHL1O00533 1208 aa27.1■■□□□ 1.93
CLN3-219ENST00000565778 ERBB4Q15303 1308 aa27.1■■□□□ 1.93
CLN3-219ENST00000565778 ZBTB3Q9H5J0 574 aa27.09■■□□□ 1.93
CLN3-219ENST00000565778 BCORQ6W2J9 1755 aa27.08■■□□□ 1.93
CLN3-219ENST00000565778 SRGNP10124 158 aa27.08■■□□□ 1.93
CLN3-219ENST00000565778 RASSF7Q02833 373 aa27.08■■□□□ 1.93
CLN3-219ENST00000565778 NECTIN2Q92692 538 aa27.08■■□□□ 1.93
CLN3-219ENST00000565778 CNKSR1Q969H4 720 aa27.08■■□□□ 1.93
CLN3-219ENST00000565778 SENP3-EIF4A1A0A087X0R7 540 aa27.07■■□□□ 1.92
CLN3-219ENST00000565778 APAF1O14727 1248 aa27.07■■□□□ 1.92
CLN3-219ENST00000565778 C21orf2O43822 256 aa27.07■■□□□ 1.92
CLN3-219ENST00000565778 STYK1Q6J9G0 422 aa27.07■■□□□ 1.92
CLN3-219ENST00000565778 MASTLQ96GX5 879 aa27.07■■□□□ 1.92
CLN3-219ENST00000565778 LAMB4A4D0S4 1761 aa27.07■■□□□ 1.92
CLN3-219ENST00000565778 PDIA6Q15084 440 aa27.05■■□□□ 1.92
CLN3-219ENST00000565778 NYXQ9GZU5 481 aa27.05■■□□□ 1.92
CLN3-219ENST00000565778 ANXA1P04083 346 aa27.04■■□□□ 1.92
CLN3-219ENST00000565778 LMNB1P20700 586 aa27.04■■□□□ 1.92
CLN3-219ENST00000565778 GPTP24298 496 aa27.04■■□□□ 1.92
CLN3-219ENST00000565778 KRT24Q2M2I5 525 aa27.04■■□□□ 1.92
CLN3-219ENST00000565778 ANKRD31Q8N7Z5 1873 aa27.04■■□□□ 1.92
CLN3-219ENST00000565778 KIF3CO14782 793 aa27.03■■□□□ 1.92
CLN3-219ENST00000565778 GIGYF2Q6Y7W6 1299 aaKnown RBP27.03■■□□□ 1.92
CLN3-219ENST00000565778 NPR1P16066 1061 aa27.02■■□□□ 1.92
CLN3-219ENST00000565778 PROSER3Q2NL68 480 aa27.02■■□□□ 1.92
CLN3-219ENST00000565778 CCDC184Q52MB2 194 aa27.02■■□□□ 1.92
CLN3-219ENST00000565778 CFAP44Q96MT7 982 aa27.02■■□□□ 1.92
CLN3-219ENST00000565778 AIMP1Q12904 312 aaKnown RBP27.01■■□□□ 1.91
CLN3-219ENST00000565778 PRPF40BQ6NWY9 871 aaKnown RBP27.01■■□□□ 1.91
CLN3-219ENST00000565778 DLEC1Q9Y238 1755 aa27.01■■□□□ 1.91
CLN3-219ENST00000565778 KLRG2A4D1S0 409 aaPredicted RBP27■■□□□ 1.91
CLN3-219ENST00000565778 NFKBIEO00221 500 aa27■■□□□ 1.91
CLN3-219ENST00000565778 COPS6Q7L5N1 327 aa27■■□□□ 1.91
CLN3-219ENST00000565778 LRP10Q7Z4F1 713 aa27■■□□□ 1.91
CLN3-219ENST00000565778 NUTM1Q86Y26 1132 aa27■■□□□ 1.91
CLN3-219ENST00000565778 NMRK2Q9NPI5 230 aa27■■□□□ 1.91
CLN3-219ENST00000565778 KDM2BQ8NHM5 1336 aa26.99■■□□□ 1.91
CLN3-219ENST00000565778 ANP32CO43423 234 aa26.99■■□□□ 1.91
CLN3-219ENST00000565778 PRELPP51888 382 aa26.99■■□□□ 1.91
CLN3-219ENST00000565778 SUSD4Q5VX71 490 aa26.99■■□□□ 1.91
CLN3-219ENST00000565778 ZNF34Q8IZ26 560 aa26.99■■□□□ 1.91
CLN3-219ENST00000565778 CALD1Q05682 793 aaKnown RBP26.98■■□□□ 1.91
CLN3-219ENST00000565778 ERFEQ4G0M1 354 aa26.98■■□□□ 1.91
CLN3-219ENST00000565778 DDX21Q9NR30 783 aaKnown RBP eCLIP26.98■■□□□ 1.91
CLN3-219ENST00000565778 SOGA3Q5TF21 947 aa26.97■■□□□ 1.91
CLN3-219ENST00000565778 HDGFL1Q5TGJ6 251 aa26.97■■□□□ 1.91
CLN3-219ENST00000565778 PPP1R42Q7Z4L9 355 aa26.97■■□□□ 1.91
CLN3-219ENST00000565778 XAGE3Q8WTP9 111 aa26.97■■□□□ 1.91
CLN3-219ENST00000565778 MBIPQ9NS73 344 aa26.97■■□□□ 1.91
CLN3-219ENST00000565778 UBN2Q6ZU65 1347 aa26.96■■□□□ 1.91
CLN3-219ENST00000565778 ALDH1B1P30837 517 aa26.96■■□□□ 1.91
CLN3-219ENST00000565778 GNAI1P63096 354 aa26.95■■□□□ 1.9
CLN3-219ENST00000565778 PARP10Q53GL7 1025 aa26.95■■□□□ 1.9
CLN3-219ENST00000565778 DUSP27Q5VZP5 1158 aa26.95■■□□□ 1.9
CLN3-219ENST00000565778 RRAGCQ9HB90 399 aa26.95■■□□□ 1.9
CLN3-219ENST00000565778 COL11A2P13942 1736 aaPredicted RBP26.94■■□□□ 1.9
CLN3-219ENST00000565778 TOMM70O94826 608 aa26.94■■□□□ 1.9
CLN3-219ENST00000565778 HOXB7P09629 217 aa26.94■■□□□ 1.9
CLN3-219ENST00000565778 ZNF853P0CG23 659 aa26.94■■□□□ 1.9
CLN3-219ENST00000565778 C16orf71Q8IYS4 520 aaPredicted RBP26.94■■□□□ 1.9
CLN3-219ENST00000565778 TAOK3Q9H2K8 898 aa26.94■■□□□ 1.9
CLN3-219ENST00000565778 IFT57Q9NWB7 429 aa26.94■■□□□ 1.9
CLN3-219ENST00000565778 CHPF2Q9P2E5 772 aa26.94■■□□□ 1.9
CLN3-219ENST00000565778 SBF1O95248 1867 aa26.93■■□□□ 1.9
CLN3-219ENST00000565778 ZC3H4Q9UPT8 1303 aaKnown RBP26.93■■□□□ 1.9
CLN3-219ENST00000565778 NUP98P52948 1817 aa26.93■■□□□ 1.9
CLN3-219ENST00000565778 C7orf43Q8WVR3 580 aa26.93■■□□□ 1.9
CLN3-219ENST00000565778 HSP90AB3PQ58FF7 597 aa26.92■■□□□ 1.9
CLN3-219ENST00000565778 UTP14AQ9BVJ6 771 aaKnown RBP26.92■■□□□ 1.9
CLN3-219ENST00000565778 MRS2Q9HD23 443 aa26.92■■□□□ 1.9
CLN3-219ENST00000565778 DBF4Q9UBU7 674 aaPredicted RBP26.92■■□□□ 1.9
CLN3-219ENST00000565778 SLX4Q8IY92 1834 aa26.91■■□□□ 1.9
CLN3-219ENST00000565778 GLTPD2A6NH11 291 aa26.91■■□□□ 1.9
CLN3-219ENST00000565778 NTSR2O95665 410 aa26.91■■□□□ 1.9
CLN3-219ENST00000565778 CCDC93Q567U6 631 aa26.91■■□□□ 1.9
CLN3-219ENST00000565778 RPGRQ92834 1020 aaKnown RBP26.91■■□□□ 1.9
CLN3-219ENST00000565778 ABCC12Q96J65 1359 aa26.91■■□□□ 1.9
CLN3-219ENST00000565778 LTBP3Q9NS15 1303 aa26.9■■□□□ 1.9
CLN3-219ENST00000565778 ELL2O00472 640 aaPredicted RBP26.9■■□□□ 1.9
CLN3-219ENST00000565778 CRY2Q49AN0 593 aa26.9■■□□□ 1.9
CLN3-219ENST00000565778 DPY19L2Q6NUT2 758 aa26.9■■□□□ 1.9
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms