RNA–Protein interactions for RNA: ENST00000562078.5

CLK3-206, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,455 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-206ENST00000562078 CTNNA3Q9UI47 895 aa16.01■□□□□ 0.15
CLK3-206ENST00000562078 AHDC1Q5TGY3 1603 aaPredicted RBP16.01■□□□□ 0.15
CLK3-206ENST00000562078 TRIM6-TRIM34B2RNG4 842 aa16.01■□□□□ 0.15
CLK3-206ENST00000562078 HTATSF1O43719 755 aaKnown RBP16.01■□□□□ 0.15
CLK3-206ENST00000562078 NCBP1Q09161 790 aaKnown RBP16.01■□□□□ 0.15
CLK3-206ENST00000562078 TRIM34Q9BYJ4 488 aa16.01■□□□□ 0.15
CLK3-206ENST00000562078 LMO7Q8WWI1 1683 aa16■□□□□ 0.15
CLK3-206ENST00000562078 ERICH4A6NGS2 130 aa16■□□□□ 0.15
CLK3-206ENST00000562078 TERF2Q15554 542 aa16■□□□□ 0.15
CLK3-206ENST00000562078 TEX2Q8IWB9 1127 aa16■□□□□ 0.15
CLK3-206ENST00000562078 SIRT2Q8IXJ6 389 aa16■□□□□ 0.15
CLK3-206ENST00000562078 SECISBP2LQ93073 1101 aaKnown RBP16■□□□□ 0.15
CLK3-206ENST00000562078 DIAPH3Q9NSV4 1193 aa16■□□□□ 0.15
CLK3-206ENST00000562078 ERBB3P21860 1342 aa16■□□□□ 0.15
CLK3-206ENST00000562078 SLC4A2P04920 1241 aa16■□□□□ 0.15
CLK3-206ENST00000562078 INTS3Q68E01 1043 aaKnown RBP16■□□□□ 0.15
CLK3-206ENST00000562078 CHD1LQ86WJ1 897 aa16■□□□□ 0.15
CLK3-206ENST00000562078 RGS22Q8NE09 1264 aa16■□□□□ 0.15
CLK3-206ENST00000562078 ZBTB9Q96C00 473 aa16■□□□□ 0.15
CLK3-206ENST00000562078 CPDO75976 1380 aa15.99■□□□□ 0.15
CLK3-206ENST00000562078 PTPRCP08575 1304 aa15.99■□□□□ 0.15
CLK3-206ENST00000562078 CHAF1AQ13111 956 aaPredicted RBP15.99■□□□□ 0.15
CLK3-206ENST00000562078 TRERF1Q96PN7 1200 aa15.99■□□□□ 0.15
CLK3-206ENST00000562078 PHLPP1O60346 1717 aa15.99■□□□□ 0.15
CLK3-206ENST00000562078 ABCC6O95255 1503 aa15.99■□□□□ 0.15
CLK3-206ENST00000562078 CAMTA1Q9Y6Y1 1673 aa15.99■□□□□ 0.15
CLK3-206ENST00000562078 ADCY5O95622 1261 aa15.99■□□□□ 0.15
CLK3-206ENST00000562078 CSB-PGBD3P0DP91 1061 aa15.99■□□□□ 0.15
CLK3-206ENST00000562078 IL17REQ8NFR9 667 aa15.99■□□□□ 0.15
CLK3-206ENST00000562078 PRDM11Q9NQV5 511 aa15.99■□□□□ 0.15
CLK3-206ENST00000562078 N4BP2Q86UW6 1770 aaPredicted RBP15.98■□□□□ 0.15
CLK3-206ENST00000562078 TULP2O00295 520 aa15.98■□□□□ 0.15
CLK3-206ENST00000562078 TOM1O60784 492 aa15.98■□□□□ 0.15
CLK3-206ENST00000562078 PIP4K2BP78356 416 aa15.98■□□□□ 0.15
CLK3-206ENST00000562078 DDX41Q9UJV9 622 aaKnown RBP15.98■□□□□ 0.15
CLK3-206ENST00000562078 KDM3BQ7LBC6 1761 aa15.98■□□□□ 0.15
CLK3-206ENST00000562078 G2E3Q7L622 706 aa15.97■□□□□ 0.15
CLK3-206ENST00000562078 DHX37Q8IY37 1157 aaKnown RBP15.97■□□□□ 0.15
CLK3-206ENST00000562078 GCC1Q96CN9 775 aa15.97■□□□□ 0.15
CLK3-206ENST00000562078 PYCARDQ9ULZ3 195 aa15.97■□□□□ 0.15
CLK3-206ENST00000562078 ATP10DQ9P241 1426 aa15.97■□□□□ 0.15
CLK3-206ENST00000562078 ANKRD45Q5TZF3 282 aa15.96■□□□□ 0.15
CLK3-206ENST00000562078 NLRP2Q9NX02 1062 aa15.96■□□□□ 0.15
CLK3-206ENST00000562078 MBD3O95983 291 aa15.96■□□□□ 0.15
CLK3-206ENST00000562078 CHRM1P11229 460 aaPredicted RBP15.96■□□□□ 0.15
CLK3-206ENST00000562078 NAA30Q147X3 362 aaPredicted RBP15.96■□□□□ 0.15
CLK3-206ENST00000562078 RABEP1Q15276 862 aa15.96■□□□□ 0.15
CLK3-206ENST00000562078 KIAA1524Q8TCG1 905 aa15.95■□□□□ 0.14
CLK3-206ENST00000562078 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP15.95■□□□□ 0.14
CLK3-206ENST00000562078 CWC22Q9HCG8 908 aaKnown RBP15.95■□□□□ 0.14
CLK3-206ENST00000562078 NECTIN2Q92692 538 aa15.94■□□□□ 0.14
CLK3-206ENST00000562078 STK31Q9BXU1 1019 aa15.94■□□□□ 0.14
CLK3-206ENST00000562078 MORC2Q9Y6X9 1032 aaPredicted RBP15.94■□□□□ 0.14
CLK3-206ENST00000562078 UBAP1LF5GYI3 381 aa15.94■□□□□ 0.14
CLK3-206ENST00000562078 F6X3S4 739 aa15.94■□□□□ 0.14
CLK3-206ENST00000562078 NCAPD2Q15021 1401 aa15.94■□□□□ 0.14
CLK3-206ENST00000562078 TAF7Q15545 349 aaPredicted RBP15.94■□□□□ 0.14
CLK3-206ENST00000562078 MEIS3Q99687 375 aa15.94■□□□□ 0.14
CLK3-206ENST00000562078 KCNF1Q9H3M0 494 aa15.94■□□□□ 0.14
CLK3-206ENST00000562078 SLC4A10Q6U841 1118 aa15.93■□□□□ 0.14
CLK3-206ENST00000562078 COL16A1Q07092 1604 aaPredicted RBP15.93■□□□□ 0.14
CLK3-206ENST00000562078 CEMIPQ8WUJ3 1361 aa15.93■□□□□ 0.14
CLK3-206ENST00000562078 COL22A1Q8NFW1 1626 aaPredicted RBP15.93■□□□□ 0.14
CLK3-206ENST00000562078 KIF18AQ8NI77 898 aa15.92■□□□□ 0.14
CLK3-206ENST00000562078 CALCOCO1Q9P1Z2 691 aa15.92■□□□□ 0.14
CLK3-206ENST00000562078 PLEKHO1Q53GL0 409 aaPredicted RBP15.92■□□□□ 0.14
CLK3-206ENST00000562078 CHMP4CQ96CF2 233 aa15.92■□□□□ 0.14
CLK3-206ENST00000562078 PLCB2Q00722 1185 aa15.91■□□□□ 0.14
CLK3-206ENST00000562078 CCDC30Q5VVM6 783 aa15.91■□□□□ 0.14
CLK3-206ENST00000562078 ANKRD44Q8N8A2 993 aa15.91■□□□□ 0.14
CLK3-206ENST00000562078 RAPGEF4Q8WZA2 1011 aa15.91■□□□□ 0.14
CLK3-206ENST00000562078 ZNF530Q6P9A1 599 aaPredicted RBP15.91■□□□□ 0.14
CLK3-206ENST00000562078 LGR6Q9HBX8 967 aa15.91■□□□□ 0.14
CLK3-206ENST00000562078 SIPA1L3O60292 1781 aaPredicted RBP15.9■□□□□ 0.14
CLK3-206ENST00000562078 FLIIQ13045 1269 aa15.9■□□□□ 0.14
CLK3-206ENST00000562078 UVSSAQ2YD98 709 aa15.9■□□□□ 0.14
CLK3-206ENST00000562078 CEP85Q6P2H3 762 aa15.9■□□□□ 0.14
CLK3-206ENST00000562078 HCLS1P14317 486 aaPredicted RBP15.9■□□□□ 0.14
CLK3-206ENST00000562078 FOXD4L6Q3SYB3 417 aaPredicted RBP15.9■□□□□ 0.14
CLK3-206ENST00000562078 AMOTQ4VCS5 1084 aa15.9■□□□□ 0.14
CLK3-206ENST00000562078 FOXD4L3Q6VB84 417 aaPredicted RBP15.9■□□□□ 0.14
CLK3-206ENST00000562078 KRT222Q8N1A0 295 aa15.9■□□□□ 0.14
CLK3-206ENST00000562078 BABAM1Q9NWV8 329 aa15.9■□□□□ 0.14
CLK3-206ENST00000562078 COL5A2P05997 1499 aaPredicted RBP15.9■□□□□ 0.14
CLK3-206ENST00000562078 GADD45BO75293 160 aaPredicted RBP15.89■□□□□ 0.13
CLK3-206ENST00000562078 CDC45O75419 566 aa15.89■□□□□ 0.13
CLK3-206ENST00000562078 FAM184AQ8NB25 1140 aa15.89■□□□□ 0.13
CLK3-206ENST00000562078 SYAP1Q96A49 352 aaPredicted RBP15.89■□□□□ 0.13
CLK3-206ENST00000562078 GDPD2Q9HCC8 539 aa15.89■□□□□ 0.13
CLK3-206ENST00000562078 ST7Q9NRC1 585 aa15.89■□□□□ 0.13
CLK3-206ENST00000562078 CCT4P50991 539 aaKnown RBP15.89■□□□□ 0.13
CLK3-206ENST00000562078 TOM1L2Q6ZVM7 507 aa15.89■□□□□ 0.13
CLK3-206ENST00000562078 DCTPP1Q9H773 170 aa15.89■□□□□ 0.13
CLK3-206ENST00000562078 STRN4Q9NRL3 753 aa15.89■□□□□ 0.13
CLK3-206ENST00000562078 WDR17Q8IZU2 1322 aa15.88■□□□□ 0.13
CLK3-206ENST00000562078 TATP17735 454 aaPredicted RBP15.88■□□□□ 0.13
CLK3-206ENST00000562078 C1orf141Q5JVX7 400 aa15.88■□□□□ 0.13
CLK3-206ENST00000562078 FEZ2Q9UHY8 353 aaPredicted RBP15.88■□□□□ 0.13
CLK3-206ENST00000562078 SOS1Q07889 1333 aaPredicted RBP15.88■□□□□ 0.13
CLK3-206ENST00000562078 EVA1CP58658 441 aa15.88■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms