RNA–Protein interactions for RNA: ENST00000561976.5

VPS9D1-202, Transcript of VPS9 domain containing 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS9D1, Length 2,791 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-202ENST00000561976 CCDC94Q9BW85 323 aaPredicted RBP16.7■□□□□ 0.26
VPS9D1-202ENST00000561976 CYP46A1Q9Y6A2 500 aa16.7■□□□□ 0.26
VPS9D1-202ENST00000561976 TNRQ92752 1358 aa16.7■□□□□ 0.26
VPS9D1-202ENST00000561976 TSPOAP1O95153 1857 aa16.7■□□□□ 0.26
VPS9D1-202ENST00000561976 PTH1RQ03431 593 aa16.7■□□□□ 0.26
VPS9D1-202ENST00000561976 ADCK5Q3MIX3 580 aa16.7■□□□□ 0.26
VPS9D1-202ENST00000561976 ZSCAN31Q96LW9 406 aaPredicted RBP16.7■□□□□ 0.26
VPS9D1-202ENST00000561976 ADAMTS13Q76LX8 1427 aa16.69■□□□□ 0.26
VPS9D1-202ENST00000561976 VPS53Q5VIR6 699 aa16.69■□□□□ 0.26
VPS9D1-202ENST00000561976 FUCA2Q9BTY2 467 aa16.69■□□□□ 0.26
VPS9D1-202ENST00000561976 BABAM1Q9NWV8 329 aa16.69■□□□□ 0.26
VPS9D1-202ENST00000561976 CHMP3Q9Y3E7 222 aa16.69■□□□□ 0.26
VPS9D1-202ENST00000561976 PI4KAP2A4QPH2 592 aa16.69■□□□□ 0.26
VPS9D1-202ENST00000561976 FAM177BA6PVY3 158 aa16.69■□□□□ 0.26
VPS9D1-202ENST00000561976 HOXC9P31274 260 aa16.69■□□□□ 0.26
VPS9D1-202ENST00000561976 CLASRPQ8N2M8 674 aaKnown RBP16.69■□□□□ 0.26
VPS9D1-202ENST00000561976 PI4KAP1Q8N8J0 262 aa16.69■□□□□ 0.26
VPS9D1-202ENST00000561976 DNAAF4Q8WXU2 420 aa16.69■□□□□ 0.26
VPS9D1-202ENST00000561976 SPTLC3Q9NUV7 552 aa16.69■□□□□ 0.26
VPS9D1-202ENST00000561976 KIF3AQ9Y496 699 aa16.69■□□□□ 0.26
VPS9D1-202ENST00000561976 CCDC192P0DO97 292 aa16.68■□□□□ 0.26
VPS9D1-202ENST00000561976 KCNJ4P48050 445 aa16.68■□□□□ 0.26
VPS9D1-202ENST00000561976 USHBP1Q8N6Y0 703 aa16.68■□□□□ 0.26
VPS9D1-202ENST00000561976 SH2B1Q9NRF2 756 aaPredicted RBP16.68■□□□□ 0.26
VPS9D1-202ENST00000561976 TTC41PQ6P2S7 1318 aa16.68■□□□□ 0.26
VPS9D1-202ENST00000561976 SMAP1Q8IYB5 467 aaPredicted RBP16.68■□□□□ 0.26
VPS9D1-202ENST00000561976 NECAB1Q8N987 351 aa16.68■□□□□ 0.26
VPS9D1-202ENST00000561976 PRDM10Q9NQV6 1147 aa16.68■□□□□ 0.26
VPS9D1-202ENST00000561976 CHPF2Q9P2E5 772 aa16.68■□□□□ 0.26
VPS9D1-202ENST00000561976 AP5Z1O43299 807 aa16.67■□□□□ 0.26
VPS9D1-202ENST00000561976 CACNA1FO60840 1977 aa16.67■□□□□ 0.26
VPS9D1-202ENST00000561976 GOLGA6L6A8MZA4 724 aa16.67■□□□□ 0.26
VPS9D1-202ENST00000561976 ZKSCAN1P17029 563 aaPredicted RBP16.67■□□□□ 0.26
VPS9D1-202ENST00000561976 LTKP29376 864 aa16.67■□□□□ 0.26
VPS9D1-202ENST00000561976 CHAF1AQ13111 956 aaPredicted RBP16.67■□□□□ 0.26
VPS9D1-202ENST00000561976 BEND3Q5T5X7 828 aa16.67■□□□□ 0.26
VPS9D1-202ENST00000561976 ANXA1P04083 346 aa16.66■□□□□ 0.26
VPS9D1-202ENST00000561976 GTF2F1P35269 517 aaKnown RBP eCLIP16.66■□□□□ 0.262e-6■■■□□ 18.3
VPS9D1-202ENST00000561976 GPATCH3Q96I76 525 aa16.66■□□□□ 0.26
VPS9D1-202ENST00000561976 ZSWIM6Q9HCJ5 1215 aa16.66■□□□□ 0.26
VPS9D1-202ENST00000561976 LRRC37A3O60309 1634 aa16.66■□□□□ 0.26
VPS9D1-202ENST00000561976 TPM3P06753 285 aa16.66■□□□□ 0.26
VPS9D1-202ENST00000561976 IFIT2P09913 472 aaKnown RBP16.66■□□□□ 0.26
VPS9D1-202ENST00000561976 ME3Q16798 604 aa16.66■□□□□ 0.26
VPS9D1-202ENST00000561976 LARP1BQ659C4 914 aaKnown RBP16.66■□□□□ 0.26
VPS9D1-202ENST00000561976 ZNF710Q8N1W2 664 aa16.66■□□□□ 0.26
VPS9D1-202ENST00000561976 ECHDC1Q9NTX5 307 aa16.66■□□□□ 0.26
VPS9D1-202ENST00000561976 AMOTL2Q9Y2J4 779 aa16.66■□□□□ 0.26
VPS9D1-202ENST00000561976 FERMT3Q86UX7 667 aa16.66■□□□□ 0.26
VPS9D1-202ENST00000561976 PYCARDQ9ULZ3 195 aa16.66■□□□□ 0.26
VPS9D1-202ENST00000561976 KIAA1524Q8TCG1 905 aa16.65■□□□□ 0.26
VPS9D1-202ENST00000561976 PRDM4Q9UKN5 801 aa16.65■□□□□ 0.26
VPS9D1-202ENST00000561976 KRT85P78386 507 aa16.65■□□□□ 0.26
VPS9D1-202ENST00000561976 CAMK4Q16566 473 aa16.65■□□□□ 0.26
VPS9D1-202ENST00000561976 TM6SF1Q9BZW5 370 aa16.65■□□□□ 0.26
VPS9D1-202ENST00000561976 KCNF1Q9H3M0 494 aa16.65■□□□□ 0.26
VPS9D1-202ENST00000561976 C14orf37Q86TY3 774 aa16.64■□□□□ 0.25
VPS9D1-202ENST00000561976 USP42Q9H9J4 1324 aaKnown RBP16.64■□□□□ 0.25
VPS9D1-202ENST00000561976 PTPRUQ92729 1446 aa16.64■□□□□ 0.25
VPS9D1-202ENST00000561976 NUP62CLQ9H1M0 184 aa16.64■□□□□ 0.25
VPS9D1-202ENST00000561976 C9orf78Q9NZ63 289 aaPredicted RBP16.64■□□□□ 0.25
VPS9D1-202ENST00000561976 EIF4A1P60842 406 aaKnown RBP16.63■□□□□ 0.25
VPS9D1-202ENST00000561976 MAP3K11Q16584 847 aa16.63■□□□□ 0.25
VPS9D1-202ENST00000561976 KLHL34Q8N239 644 aa16.63■□□□□ 0.25
VPS9D1-202ENST00000561976 RBM8AQ9Y5S9 174 aaKnown RBP16.63■□□□□ 0.25
VPS9D1-202ENST00000561976 CCDC171Q6TFL3 1326 aa16.63■□□□□ 0.25
VPS9D1-202ENST00000561976 GOLGA6L4A6NEF3 574 aa16.63■□□□□ 0.25
VPS9D1-202ENST00000561976 ST3GAL1Q11201 340 aa16.63■□□□□ 0.25
VPS9D1-202ENST00000561976 FAM173BQ6P4H8 233 aa16.63■□□□□ 0.25
VPS9D1-202ENST00000561976 TTC6Q86TZ1 520 aa16.63■□□□□ 0.25
VPS9D1-202ENST00000561976 BCL2L12Q9HB09 334 aa16.63■□□□□ 0.25
VPS9D1-202ENST00000561976 TPCN1Q9ULQ1 816 aa16.63■□□□□ 0.25
VPS9D1-202ENST00000561976 PA2G4Q9UQ80 394 aaKnown RBP16.63■□□□□ 0.25
VPS9D1-202ENST00000561976 N4BP2Q86UW6 1770 aaPredicted RBP16.63■□□□□ 0.25
VPS9D1-202ENST00000561976 PLEKHG1Q9ULL1 1385 aa16.62■□□□□ 0.25
VPS9D1-202ENST00000561976 NECTIN1Q15223 517 aa16.62■□□□□ 0.25
VPS9D1-202ENST00000561976 CREB3L3Q68CJ9 461 aa16.62■□□□□ 0.25
VPS9D1-202ENST00000561976 AACSQ86V21 672 aa16.62■□□□□ 0.25
VPS9D1-202ENST00000561976 ABTB2Q8N961 1025 aa16.62■□□□□ 0.25
VPS9D1-202ENST00000561976 FAM200AQ8TCP9 573 aa16.62■□□□□ 0.25
VPS9D1-202ENST00000561976 EVI5LQ96CN4 794 aa16.62■□□□□ 0.25
VPS9D1-202ENST00000561976 PPP4R3BQ5MIZ7 849 aa16.62■□□□□ 0.25
VPS9D1-202ENST00000561976 CDC37L1Q7L3B6 337 aa16.62■□□□□ 0.25
VPS9D1-202ENST00000561976 CHMP4AQ9BY43 222 aa16.62■□□□□ 0.25
VPS9D1-202ENST00000561976 LGR6Q9HBX8 967 aa16.62■□□□□ 0.25
VPS9D1-202ENST00000561976 LIG1P18858 919 aa16.61■□□□□ 0.25
VPS9D1-202ENST00000561976 DRC7Q8IY82 874 aa16.61■□□□□ 0.25
VPS9D1-202ENST00000561976 KCNQ3O43525 872 aa16.61■□□□□ 0.25
VPS9D1-202ENST00000561976 CBX1P83916 185 aa16.61■□□□□ 0.25
VPS9D1-202ENST00000561976 TYRO3Q06418 890 aa16.61■□□□□ 0.25
VPS9D1-202ENST00000561976 LUZP1Q86V48 1076 aa16.61■□□□□ 0.25
VPS9D1-202ENST00000561976 CKAP2LQ8IYA6 745 aa16.61■□□□□ 0.25
VPS9D1-202ENST00000561976 EID1Q9Y6B2 187 aa16.61■□□□□ 0.25
VPS9D1-202ENST00000561976 RIOK3O14730 519 aaKnown RBP16.6■□□□□ 0.25
VPS9D1-202ENST00000561976 PDCP20941 246 aa16.6■□□□□ 0.25
VPS9D1-202ENST00000561976 PTGS1P23219 599 aa16.6■□□□□ 0.25
VPS9D1-202ENST00000561976 PSMA5P28066 241 aa16.6■□□□□ 0.25
VPS9D1-202ENST00000561976 ERC1Q8IUD2 1116 aa16.6■□□□□ 0.25
VPS9D1-202ENST00000561976 FAM227BQ96M60 508 aa16.6■□□□□ 0.25
VPS9D1-202ENST00000561976 TCEANC2Q96MN5 208 aa16.6■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms