RNA–Protein interactions for RNA: ENST00000560462.1

HERC1-208, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase family member 1, humanhuman

TSL 2

Gene HERC1, Length 647 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC1-208ENST00000560462 RBM27Q9P2N5 1060 aaKnown RBP9.45□□□□□ -0.9
HERC1-208ENST00000560462 HDAC9Q9UKV0 1011 aa9.45□□□□□ -0.9
HERC1-208ENST00000560462 CGNL1Q0VF96 1302 aa9.45□□□□□ -0.9
HERC1-208ENST00000560462 FAM208AQ9UK61 1670 aaKnown RBP9.45□□□□□ -0.9
HERC1-208ENST00000560462 DLEC1Q9Y238 1755 aa9.45□□□□□ -0.9
HERC1-208ENST00000560462 POTEFA5A3E0 1075 aa9.44□□□□□ -0.9
HERC1-208ENST00000560462 RPS6KA4O75676 772 aa9.44□□□□□ -0.9
HERC1-208ENST00000560462 FBXO46Q6PJ61 603 aaPredicted RBP9.44□□□□□ -0.9
HERC1-208ENST00000560462 RASEFQ8IZ41 740 aa9.44□□□□□ -0.9
HERC1-208ENST00000560462 SNX27Q96L92 541 aa9.44□□□□□ -0.9
HERC1-208ENST00000560462 PCDH11XQ9BZA7 1347 aa9.44□□□□□ -0.9
HERC1-208ENST00000560462 PCDH11YQ9BZA8 1340 aa9.44□□□□□ -0.9
HERC1-208ENST00000560462 CEP290O15078 2479 aa9.43□□□□□ -0.9
HERC1-208ENST00000560462 TRPM7Q96QT4 1865 aa9.43□□□□□ -0.9
HERC1-208ENST00000560462 LTN1O94822 1766 aa9.43□□□□□ -0.9
HERC1-208ENST00000560462 PRR29P0C7W0 189 aa9.43□□□□□ -0.9
HERC1-208ENST00000560462 RC3H1Q5TC82 1133 aaKnown RBP9.43□□□□□ -0.9
HERC1-208ENST00000560462 PHF6Q8IWS0 365 aaKnown RBP eCLIP9.43□□□□□ -0.9
HERC1-208ENST00000560462 SYNE4Q8N205 404 aa9.43□□□□□ -0.9
HERC1-208ENST00000560462 CCDC24Q8N4L8 307 aa9.43□□□□□ -0.9
HERC1-208ENST00000560462 WDR70Q9NW82 654 aa9.43□□□□□ -0.9
HERC1-208ENST00000560462 SRP68Q9UHB9 627 aaKnown RBP9.43□□□□□ -0.9
HERC1-208ENST00000560462 SPTBN5Q9NRC6 3674 aaKnown RBP9.43□□□□□ -0.9
HERC1-208ENST00000560462 FER1L6Q2WGJ9 1857 aa9.42□□□□□ -0.9
HERC1-208ENST00000560462 USP42Q9H9J4 1324 aaKnown RBP9.42□□□□□ -0.9
HERC1-208ENST00000560462 TM4SF1P30408 202 aa9.42□□□□□ -0.9
HERC1-208ENST00000560462 DHX30Q7L2E3 1194 aaKnown RBP eCLIP9.42□□□□□ -0.9
HERC1-208ENST00000560462 RAPGEF4Q8WZA2 1011 aa9.42□□□□□ -0.9
HERC1-208ENST00000560462 ASAP1Q9ULH1 1129 aa9.42□□□□□ -0.9
HERC1-208ENST00000560462 CD163L1Q9NR16 1453 aa9.41□□□□□ -0.9
HERC1-208ENST00000560462 CNTNAP4Q9C0A0 1308 aa9.41□□□□□ -0.9
HERC1-208ENST00000560462 INTS3Q68E01 1043 aaKnown RBP9.41□□□□□ -0.9
HERC1-208ENST00000560462 IP6K1Q92551 441 aa9.41□□□□□ -0.9
HERC1-208ENST00000560462 ZNF622Q969S3 477 aaKnown RBP eCLIP9.41□□□□□ -0.9
HERC1-208ENST00000560462 RAPGEFL1Q9UHV5 662 aa9.41□□□□□ -0.9
HERC1-208ENST00000560462 LMOD1P29536 600 aaPredicted RBP9.4□□□□□ -0.9
HERC1-208ENST00000560462 KIF23Q02241 960 aaPredicted RBP9.4□□□□□ -0.9
HERC1-208ENST00000560462 POTEHQ6S545 545 aa9.4□□□□□ -0.9
HERC1-208ENST00000560462 ANKRD13DQ6ZTN6 518 aa9.4□□□□□ -0.9
HERC1-208ENST00000560462 GPC2Q8N158 579 aa9.4□□□□□ -0.9
HERC1-208ENST00000560462 ZNF408Q9H9D4 720 aa9.4□□□□□ -0.9
HERC1-208ENST00000560462 STXBP5LQ9Y2K9 1186 aa9.4□□□□□ -0.9
HERC1-208ENST00000560462 ITGB4P16144 1822 aa9.4□□□□□ -0.91
HERC1-208ENST00000560462 ERBB4Q15303 1308 aa9.39□□□□□ -0.91
HERC1-208ENST00000560462 MAP3K19Q56UN5 1328 aa9.39□□□□□ -0.91
HERC1-208ENST00000560462 CYP27B1O15528 508 aa9.39□□□□□ -0.91
HERC1-208ENST00000560462 HUNKP57058 714 aa9.39□□□□□ -0.91
HERC1-208ENST00000560462 SOGA3Q5TF21 947 aa9.39□□□□□ -0.91
HERC1-208ENST00000560462 KCNV2Q8TDN2 545 aa9.39□□□□□ -0.91
HERC1-208ENST00000560462 TMOD3Q9NYL9 352 aa9.39□□□□□ -0.91
HERC1-208ENST00000560462 HTTP42858 3142 aa9.38□□□□□ -0.91
HERC1-208ENST00000560462 FAM155AB1AL88 458 aaPredicted RBP9.38□□□□□ -0.91
HERC1-208ENST00000560462 PYGBP11216 843 aa9.38□□□□□ -0.91
HERC1-208ENST00000560462 TATP17735 454 aaPredicted RBP9.38□□□□□ -0.91
HERC1-208ENST00000560462 EN2P19622 333 aaPredicted RBP9.38□□□□□ -0.91
HERC1-208ENST00000560462 USP50Q70EL3 339 aaPredicted RBP9.38□□□□□ -0.91
HERC1-208ENST00000560462 ZNF296Q8WUU4 475 aaPredicted RBP9.38□□□□□ -0.91
HERC1-208ENST00000560462 LAMA3Q16787 3333 aa9.38□□□□□ -0.91
HERC1-208ENST00000560462 KDRP35968 1356 aa9.37□□□□□ -0.91
HERC1-208ENST00000560462 SCN11AQ9UI33 1791 aa9.37□□□□□ -0.91
HERC1-208ENST00000560462 CCDC102AQ96A19 550 aa9.37□□□□□ -0.91
HERC1-208ENST00000560462 ATG3Q9NT62 314 aa9.37□□□□□ -0.91
HERC1-208ENST00000560462 CENPFP49454 3210 aa9.37□□□□□ -0.91
HERC1-208ENST00000560462 KTN1Q86UP2 1357 aaKnown RBP9.37□□□□□ -0.91
HERC1-208ENST00000560462 SOX1O00570 391 aaPredicted RBP9.36□□□□□ -0.91
HERC1-208ENST00000560462 SERPINB2P05120 415 aa9.36□□□□□ -0.91
HERC1-208ENST00000560462 EPS15P42566 896 aa9.36□□□□□ -0.91
HERC1-208ENST00000560462 RGMBQ6NW40 437 aa9.36□□□□□ -0.91
HERC1-208ENST00000560462 SUGP2Q8IX01 1082 aaKnown RBP eCLIP9.36□□□□□ -0.91
HERC1-208ENST00000560462 LRCH3Q96II8 777 aa9.36□□□□□ -0.91
HERC1-208ENST00000560462 CARMIL3Q8ND23 1372 aa9.36□□□□□ -0.91
HERC1-208ENST00000560462 FZD9O00144 591 aa9.35□□□□□ -0.91
HERC1-208ENST00000560462 ZPR1O75312 459 aa9.35□□□□□ -0.91
HERC1-208ENST00000560462 NFIXQ14938 502 aa9.35□□□□□ -0.91
HERC1-208ENST00000560462 ZNF467Q7Z7K2 595 aaPredicted RBP9.35□□□□□ -0.91
HERC1-208ENST00000560462 DEFB123Q8N688 67 aa9.35□□□□□ -0.91
HERC1-208ENST00000560462 USHBP1Q8N6Y0 703 aa9.35□□□□□ -0.91
HERC1-208ENST00000560462 SLC4A9Q96Q91 983 aa9.35□□□□□ -0.91
HERC1-208ENST00000560462 CSRNP1Q96S65 589 aa9.35□□□□□ -0.91
HERC1-208ENST00000560462 GLIS2Q9BZE0 524 aaPredicted RBP9.35□□□□□ -0.91
HERC1-208ENST00000560462 PDZRN3Q9UPQ7 1066 aa9.35□□□□□ -0.91
HERC1-208ENST00000560462 GJA3Q9Y6H8 435 aa9.35□□□□□ -0.91
HERC1-208ENST00000560462 PAPPA2Q9BXP8 1791 aa9.35□□□□□ -0.91
HERC1-208ENST00000560462 NBPF6Q5VWK0 638 aa9.34□□□□□ -0.91
HERC1-208ENST00000560462 USPL1Q5W0Q7 1092 aa9.34□□□□□ -0.91
HERC1-208ENST00000560462 NME9Q86XW9 330 aa9.34□□□□□ -0.91
HERC1-208ENST00000560462 NBPF4Q96M43 638 aa9.34□□□□□ -0.91
HERC1-208ENST00000560462 ZNF277Q9NRM2 450 aaPredicted RBP9.34□□□□□ -0.91
HERC1-208ENST00000560462 NRXN2Q9P2S2 1712 aa9.34□□□□□ -0.92
HERC1-208ENST00000560462 RBBP6Q7Z6E9 1792 aaKnown RBP9.33□□□□□ -0.92
HERC1-208ENST00000560462 PDE6BP35913 854 aa9.33□□□□□ -0.92
HERC1-208ENST00000560462 SCNN1DP51172 638 aa9.33□□□□□ -0.92
HERC1-208ENST00000560462 ZNF157P51786 506 aaPredicted RBP9.33□□□□□ -0.92
HERC1-208ENST00000560462 PRPF40BQ6NWY9 871 aaKnown RBP9.33□□□□□ -0.92
HERC1-208ENST00000560462 REM2Q8IYK8 340 aaPredicted RBP9.33□□□□□ -0.92
HERC1-208ENST00000560462 DCAF11Q8TEB1 546 aa9.33□□□□□ -0.92
HERC1-208ENST00000560462 CNKSR1Q969H4 720 aa9.33□□□□□ -0.92
HERC1-208ENST00000560462 PRO3102Q9H379 93 aa9.33□□□□□ -0.92
HERC1-208ENST00000560462 DAXXQ9UER7 740 aaPredicted RBP9.33□□□□□ -0.92
HERC1-208ENST00000560462 COL5A3P25940 1745 aaPredicted RBP9.33□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms