RNA–Protein interactions for RNA: ENST00000560070.5

USP3-217, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 4

Gene USP3, Length 545 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-217ENST00000560070 CAPN15O75808 1086 aa11.05□□□□□ -0.64
USP3-217ENST00000560070 TWISTNBQ3B726 338 aaPredicted RBP11.05□□□□□ -0.64
USP3-217ENST00000560070 NCBP3Q53F19 620 aaKnown RBP11.05□□□□□ -0.64
USP3-217ENST00000560070 CDCA7LQ96GN5 454 aa11.05□□□□□ -0.64
USP3-217ENST00000560070 PHAXQ9H814 394 aaKnown RBP11.05□□□□□ -0.64
USP3-217ENST00000560070 DDX21Q9NR30 783 aaKnown RBP eCLIP11.05□□□□□ -0.64
USP3-217ENST00000560070 NIP7Q9Y221 180 aaKnown RBP eCLIP11.05□□□□□ -0.64
USP3-217ENST00000560070 CD2APQ9Y5K6 639 aa11.05□□□□□ -0.64
USP3-217ENST00000560070 DPEP1P16444 411 aa11.04□□□□□ -0.64
USP3-217ENST00000560070 CHRNA5P30532 468 aa11.04□□□□□ -0.64
USP3-217ENST00000560070 CCDC30Q5VVM6 783 aa11.04□□□□□ -0.64
USP3-217ENST00000560070 MYH16Q9H6N6 1097 aa11.04□□□□□ -0.64
USP3-217ENST00000560070 DBF4Q9UBU7 674 aaPredicted RBP11.04□□□□□ -0.64
USP3-217ENST00000560070 ZNF652Q9Y2D9 606 aa11.04□□□□□ -0.64
USP3-217ENST00000560070 C5P01031 1676 aa11.04□□□□□ -0.64
USP3-217ENST00000560070 MAP3K15Q6ZN16 1313 aa11.04□□□□□ -0.64
USP3-217ENST00000560070 FANCIQ9NVI1 1328 aa11.04□□□□□ -0.64
USP3-217ENST00000560070 HOXB7P09629 217 aa11.03□□□□□ -0.64
USP3-217ENST00000560070 GTF2E1P29083 439 aaPredicted RBP11.03□□□□□ -0.64
USP3-217ENST00000560070 CLEC4GQ6UXB4 293 aa11.03□□□□□ -0.64
USP3-217ENST00000560070 LRP10Q7Z4F1 713 aa11.03□□□□□ -0.64
USP3-217ENST00000560070 NBPF5PQ86XG9 351 aaPredicted RBP11.03□□□□□ -0.64
USP3-217ENST00000560070 ERVV-1B6SEH8 477 aa11.02□□□□□ -0.65
USP3-217ENST00000560070 VAMP4O75379 141 aa11.02□□□□□ -0.65
USP3-217ENST00000560070 SLC4A2P04920 1241 aa11.02□□□□□ -0.65
USP3-217ENST00000560070 HNRNPUQ00839 825 aaKnown RBP eCLIP11.02□□□□□ -0.65
USP3-217ENST00000560070 HYPKQ9NX55 129 aa11.02□□□□□ -0.65
USP3-217ENST00000560070 CASZ1Q86V15 1759 aa11.02□□□□□ -0.65
USP3-217ENST00000560070 ERBB4Q15303 1308 aa11.02□□□□□ -0.65
USP3-217ENST00000560070 SRCAPQ6ZRS2 3230 aa11.01□□□□□ -0.65
USP3-217ENST00000560070 ATP5J2-PTCD1G3V325 749 aa11.01□□□□□ -0.65
USP3-217ENST00000560070 TGFB2P61812 414 aa11.01□□□□□ -0.65
USP3-217ENST00000560070 SUSD4Q5VX71 490 aa11.01□□□□□ -0.65
USP3-217ENST00000560070 PRR5LQ6MZQ0 368 aa11.01□□□□□ -0.65
USP3-217ENST00000560070 TPTE2Q6XPS3 522 aa11.01□□□□□ -0.65
USP3-217ENST00000560070 GIGYF2Q6Y7W6 1299 aaKnown RBP11.01□□□□□ -0.65
USP3-217ENST00000560070 ANKRD13DQ6ZTN6 518 aa11.01□□□□□ -0.65
USP3-217ENST00000560070 RIC3Q7Z5B4 369 aa11.01□□□□□ -0.65
USP3-217ENST00000560070 NUTM1Q86Y26 1132 aa11.01□□□□□ -0.65
USP3-217ENST00000560070 C2CD5Q86YS7 1000 aa11.01□□□□□ -0.65
USP3-217ENST00000560070 STK31Q9BXU1 1019 aa11.01□□□□□ -0.65
USP3-217ENST00000560070 ZNF219Q9P2Y4 722 aaPredicted RBP11.01□□□□□ -0.65
USP3-217ENST00000560070 TJP1Q07157 1748 aa11.01□□□□□ -0.65
USP3-217ENST00000560070 E9PSI1 815 aa11□□□□□ -0.65
USP3-217ENST00000560070 YBX3P16989 372 aaKnown RBP eCLIP11□□□□□ -0.65
USP3-217ENST00000560070 SLFN5Q08AF3 891 aa11□□□□□ -0.65
USP3-217ENST00000560070 G2E3Q7L622 706 aa11□□□□□ -0.65
USP3-217ENST00000560070 CNBD1Q8NA66 436 aa11□□□□□ -0.65
USP3-217ENST00000560070 ZNF622Q969S3 477 aaKnown RBP eCLIP11□□□□□ -0.65
USP3-217ENST00000560070 BCS1LQ9Y276 419 aa11□□□□□ -0.65
USP3-217ENST00000560070 ZNF521Q96K83 1311 aa11□□□□□ -0.65
USP3-217ENST00000560070 KCNA3P22001 575 aa10.99□□□□□ -0.65
USP3-217ENST00000560070 ST5P78524 1137 aa10.99□□□□□ -0.65
USP3-217ENST00000560070 TCIRG1Q13488 830 aa10.99□□□□□ -0.65
USP3-217ENST00000560070 ERFEQ4G0M1 354 aa10.99□□□□□ -0.65
USP3-217ENST00000560070 RTL5Q5HYW3 569 aaPredicted RBP10.99□□□□□ -0.65
USP3-217ENST00000560070 ZNF34Q8IZ26 560 aa10.99□□□□□ -0.65
USP3-217ENST00000560070 PLBD2Q8NHP8 589 aa10.99□□□□□ -0.65
USP3-217ENST00000560070 CHMP4AQ9BY43 222 aa10.99□□□□□ -0.65
USP3-217ENST00000560070 U3KPZ7 1027 aaPredicted RBP10.99□□□□□ -0.65
USP3-217ENST00000560070 H0YIN7 160 aa10.98□□□□□ -0.65
USP3-217ENST00000560070 SYNE4Q8N205 404 aa10.98□□□□□ -0.65
USP3-217ENST00000560070 JARID2Q92833 1246 aaPredicted RBP10.98□□□□□ -0.65
USP3-217ENST00000560070 MYD88Q99836 296 aa10.98□□□□□ -0.65
USP3-217ENST00000560070 BRIP1Q9BX63 1249 aa10.98□□□□□ -0.65
USP3-217ENST00000560070 PIM2Q9P1W9 311 aa10.98□□□□□ -0.65
USP3-217ENST00000560070 CARMIL3Q8ND23 1372 aa10.98□□□□□ -0.65
USP3-217ENST00000560070 DDX58O95786 925 aaKnown RBP10.97□□□□□ -0.65
USP3-217ENST00000560070 PDE6BP35913 854 aa10.97□□□□□ -0.65
USP3-217ENST00000560070 ARHGAP27Q6ZUM4 889 aa10.97□□□□□ -0.65
USP3-217ENST00000560070 PPP1R42Q7Z4L9 355 aa10.97□□□□□ -0.65
USP3-217ENST00000560070 NLRP10Q86W26 655 aa10.97□□□□□ -0.65
USP3-217ENST00000560070 UTP14AQ9BVJ6 771 aaKnown RBP10.97□□□□□ -0.65
USP3-217ENST00000560070 TRMT112Q9UI30 125 aaKnown RBP10.97□□□□□ -0.65
USP3-217ENST00000560070 MAP3K2Q9Y2U5 619 aa10.97□□□□□ -0.65
USP3-217ENST00000560070 UBN2Q6ZU65 1347 aa10.97□□□□□ -0.65
USP3-217ENST00000560070 LRP5O75197 1615 aa10.97□□□□□ -0.65
USP3-217ENST00000560070 TAF1LQ8IZX4 1826 aa10.96□□□□□ -0.65
USP3-217ENST00000560070 SIPA1L3O60292 1781 aaPredicted RBP10.96□□□□□ -0.65
USP3-217ENST00000560070 PI4KAP2A4QPH2 592 aa10.96□□□□□ -0.65
USP3-217ENST00000560070 HCLS1P14317 486 aaPredicted RBP10.96□□□□□ -0.65
USP3-217ENST00000560070 PARP10Q53GL7 1025 aa10.96□□□□□ -0.65
USP3-217ENST00000560070 HSP90AB3PQ58FF7 597 aa10.96□□□□□ -0.65
USP3-217ENST00000560070 DALRD3Q5D0E6 543 aaKnown RBP10.96□□□□□ -0.65
USP3-217ENST00000560070 PI4KAP1Q8N8J0 262 aa10.96□□□□□ -0.65
USP3-217ENST00000560070 BCL2L13Q9BXK5 485 aa10.96□□□□□ -0.65
USP3-217ENST00000560070 NYXQ9GZU5 481 aa10.96□□□□□ -0.65
USP3-217ENST00000560070 MYH14Q7Z406 1995 aaKnown RBP10.96□□□□□ -0.66
USP3-217ENST00000560070 ZNF831Q5JPB2 1677 aa10.95□□□□□ -0.66
USP3-217ENST00000560070 CICQ96RK0 1608 aaPredicted RBP10.95□□□□□ -0.66
USP3-217ENST00000560070 GRIN3BO60391 1043 aa10.95□□□□□ -0.66
USP3-217ENST00000560070 NTSR2O95665 410 aa10.95□□□□□ -0.66
USP3-217ENST00000560070 FLIIQ13045 1269 aa10.95□□□□□ -0.66
USP3-217ENST00000560070 FKBP5Q13451 457 aaPredicted RBP10.95□□□□□ -0.66
USP3-217ENST00000560070 KSR2Q6VAB6 950 aa10.95□□□□□ -0.66
USP3-217ENST00000560070 FAM89AQ96GI7 184 aa10.95□□□□□ -0.66
USP3-217ENST00000560070 UBR3Q6ZT12 1888 aa10.95□□□□□ -0.66
USP3-217ENST00000560070 UBR2Q8IWV8 1755 aa10.95□□□□□ -0.66
USP3-217ENST00000560070 COL5A3P25940 1745 aaPredicted RBP10.95□□□□□ -0.66
USP3-217ENST00000560070 C10orf71Q711Q0 1435 aa10.94□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms