RNA–Protein interactions for RNA: ENST00000556929.5

TMEM260-213, Transcript of transmembrane protein 260, humanhuman

TSL 4

Gene TMEM260, Length 547 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-213ENST00000556929 PROSER3Q2NL68 480 aa12.4□□□□□ -0.42
TMEM260-213ENST00000556929 CHRDL2Q6WN34 429 aa12.4□□□□□ -0.42
TMEM260-213ENST00000556929 COPS6Q7L5N1 327 aa12.4□□□□□ -0.42
TMEM260-213ENST00000556929 FRAT1Q92837 279 aaPredicted RBP12.4□□□□□ -0.42
TMEM260-213ENST00000556929 STK32BQ9NY57 414 aa12.4□□□□□ -0.42
TMEM260-213ENST00000556929 NOB1Q9ULX3 412 aaKnown RBP12.4□□□□□ -0.42
TMEM260-213ENST00000556929 BCORQ6W2J9 1755 aa12.4□□□□□ -0.42
TMEM260-213ENST00000556929 C4AP0C0L4 1744 aa12.4□□□□□ -0.43
TMEM260-213ENST00000556929 MS4A1P11836 297 aa12.39□□□□□ -0.43
TMEM260-213ENST00000556929 EIF5P55010 431 aaKnown RBP12.39□□□□□ -0.43
TMEM260-213ENST00000556929 FKBP5Q13451 457 aaPredicted RBP12.39□□□□□ -0.43
TMEM260-213ENST00000556929 TRAPPC3LQ5T215 181 aa12.39□□□□□ -0.43
TMEM260-213ENST00000556929 ZKSCAN2Q63HK3 967 aa12.39□□□□□ -0.43
TMEM260-213ENST00000556929 KIF6Q6ZMV9 814 aa12.39□□□□□ -0.43
TMEM260-213ENST00000556929 G2E3Q7L622 706 aa12.39□□□□□ -0.43
TMEM260-213ENST00000556929 FLAD1Q8NFF5 587 aa12.39□□□□□ -0.43
TMEM260-213ENST00000556929 XAGE3Q8WTP9 111 aa12.39□□□□□ -0.43
TMEM260-213ENST00000556929 ARHGAP45Q92619 1136 aa12.39□□□□□ -0.43
TMEM260-213ENST00000556929 ARXQ96QS3 562 aa12.39□□□□□ -0.43
TMEM260-213ENST00000556929 API5Q9BZZ5 524 aaKnown RBP12.39□□□□□ -0.43
TMEM260-213ENST00000556929 COL15A1P39059 1388 aa12.39□□□□□ -0.43
TMEM260-213ENST00000556929 ANKRD36CQ5JPF3 1778 aa12.38□□□□□ -0.43
TMEM260-213ENST00000556929 SSFA2P28290 1259 aa12.38□□□□□ -0.43
TMEM260-213ENST00000556929 SLC15A2Q16348 729 aa12.38□□□□□ -0.43
TMEM260-213ENST00000556929 LRP10Q7Z4F1 713 aa12.38□□□□□ -0.43
TMEM260-213ENST00000556929 DZIP3Q86Y13 1208 aaKnown RBP12.38□□□□□ -0.43
TMEM260-213ENST00000556929 TFCP2L1Q9NZI6 479 aa12.38□□□□□ -0.43
TMEM260-213ENST00000556929 AFDNP55196 1824 aaKnown RBP12.37□□□□□ -0.43
TMEM260-213ENST00000556929 RFC4P35249 363 aa12.37□□□□□ -0.43
TMEM260-213ENST00000556929 ZNF827Q17R98 1081 aa12.37□□□□□ -0.43
TMEM260-213ENST00000556929 ANKRD13DQ6ZTN6 518 aa12.37□□□□□ -0.43
TMEM260-213ENST00000556929 RIC3Q7Z5B4 369 aa12.37□□□□□ -0.43
TMEM260-213ENST00000556929 REM2Q8IYK8 340 aaPredicted RBP12.37□□□□□ -0.43
TMEM260-213ENST00000556929 SUPT16HQ9Y5B9 1047 aaKnown RBP12.37□□□□□ -0.43
TMEM260-213ENST00000556929 SCN7AQ01118 1682 aa12.37□□□□□ -0.43
TMEM260-213ENST00000556929 N4BP2Q86UW6 1770 aaPredicted RBP12.37□□□□□ -0.43
TMEM260-213ENST00000556929 SPDYE2BA6NHP3 402 aa12.36□□□□□ -0.43
TMEM260-213ENST00000556929 ZPR1O75312 459 aa12.36□□□□□ -0.43
TMEM260-213ENST00000556929 PHF14O94880 888 aa12.36□□□□□ -0.43
TMEM260-213ENST00000556929 SPDYE6P0CI01 402 aa12.36□□□□□ -0.43
TMEM260-213ENST00000556929 RRP1P56182 461 aaKnown RBP12.36□□□□□ -0.43
TMEM260-213ENST00000556929 SPDYE2Q495Y8 402 aa12.36□□□□□ -0.43
TMEM260-213ENST00000556929 KSR2Q6VAB6 950 aa12.36□□□□□ -0.43
TMEM260-213ENST00000556929 ATF7IPQ6VMQ6 1270 aa12.36□□□□□ -0.43
TMEM260-213ENST00000556929 TTLL7Q6ZT98 887 aa12.36□□□□□ -0.43
TMEM260-213ENST00000556929 PLBD2Q8NHP8 589 aa12.36□□□□□ -0.43
TMEM260-213ENST00000556929 ARHGEF1Q92888 912 aaKnown RBP12.36□□□□□ -0.43
TMEM260-213ENST00000556929 TBC1D2BQ9UPU7 963 aa12.36□□□□□ -0.43
TMEM260-213ENST00000556929 MAP3K15Q6ZN16 1313 aa12.36□□□□□ -0.43
TMEM260-213ENST00000556929 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP12.35□□□□□ -0.43
TMEM260-213ENST00000556929 PI4KAP2A4QPH2 592 aa12.35□□□□□ -0.43
TMEM260-213ENST00000556929 ERVV-1B6SEH8 477 aa12.35□□□□□ -0.43
TMEM260-213ENST00000556929 HSP90AB3PQ58FF7 597 aa12.35□□□□□ -0.43
TMEM260-213ENST00000556929 PI4KAP1Q8N8J0 262 aa12.35□□□□□ -0.43
TMEM260-213ENST00000556929 DNAAF4Q8WXU2 420 aa12.35□□□□□ -0.43
TMEM260-213ENST00000556929 NARFQ9UHQ1 456 aa12.35□□□□□ -0.43
TMEM260-213ENST00000556929 ZNF652Q9Y2D9 606 aa12.35□□□□□ -0.43
TMEM260-213ENST00000556929 PXDNLA1KZ92 1463 aa12.34□□□□□ -0.43
TMEM260-213ENST00000556929 RGL2O15211 777 aa12.34□□□□□ -0.43
TMEM260-213ENST00000556929 PLIN1O60240 522 aa12.34□□□□□ -0.43
TMEM260-213ENST00000556929 TRIM27P14373 513 aa12.34□□□□□ -0.43
TMEM260-213ENST00000556929 NEXNQ0ZGT2 675 aa12.34□□□□□ -0.43
TMEM260-213ENST00000556929 FTSJ3Q8IY81 847 aaKnown RBP12.34□□□□□ -0.43
TMEM260-213ENST00000556929 ZBTB3Q9H5J0 574 aa12.34□□□□□ -0.43
TMEM260-213ENST00000556929 MAP3K2Q9Y2U5 619 aa12.34□□□□□ -0.43
TMEM260-213ENST00000556929 RNF123Q5XPI4 1314 aa12.34□□□□□ -0.43
TMEM260-213ENST00000556929 ADCY9O60503 1353 aa12.33□□□□□ -0.44
TMEM260-213ENST00000556929 PDE3AQ14432 1141 aa12.33□□□□□ -0.44
TMEM260-213ENST00000556929 SLC4A10Q6U841 1118 aa12.33□□□□□ -0.44
TMEM260-213ENST00000556929 CLEC4GQ6UXB4 293 aa12.33□□□□□ -0.44
TMEM260-213ENST00000556929 GIGYF2Q6Y7W6 1299 aaKnown RBP12.33□□□□□ -0.44
TMEM260-213ENST00000556929 DZIP1LQ8IYY4 767 aaKnown RBP12.33□□□□□ -0.44
TMEM260-213ENST00000556929 METTL22Q9BUU2 404 aaPredicted RBP12.33□□□□□ -0.44
TMEM260-213ENST00000556929 ANO8Q9HCE9 1232 aaPredicted RBP12.33□□□□□ -0.44
TMEM260-213ENST00000556929 PNPLA7Q6ZV29 1317 aa12.33□□□□□ -0.44
TMEM260-213ENST00000556929 USP42Q9H9J4 1324 aaKnown RBP12.33□□□□□ -0.44
TMEM260-213ENST00000556929 F6X3S4 739 aa12.32□□□□□ -0.44
TMEM260-213ENST00000556929 CAMTA2O94983 1202 aa12.32□□□□□ -0.44
TMEM260-213ENST00000556929 CCT4P50991 539 aaKnown RBP12.32□□□□□ -0.44
TMEM260-213ENST00000556929 USPL1Q5W0Q7 1092 aa12.32□□□□□ -0.44
TMEM260-213ENST00000556929 SMIM5Q71RC9 77 aa12.32□□□□□ -0.44
TMEM260-213ENST00000556929 CLUAP1Q96AJ1 413 aa12.32□□□□□ -0.44
TMEM260-213ENST00000556929 MYD88Q99836 296 aa12.32□□□□□ -0.44
TMEM260-213ENST00000556929 ATP10DQ9P241 1426 aa12.31□□□□□ -0.44
TMEM260-213ENST00000556929 TCIRG1Q13488 830 aa12.31□□□□□ -0.44
TMEM260-213ENST00000556929 HLFQ16534 295 aa12.31□□□□□ -0.44
TMEM260-213ENST00000556929 AMIGO3Q86WK7 504 aa12.31□□□□□ -0.44
TMEM260-213ENST00000556929 COL23A1Q86Y22 540 aaPredicted RBP12.31□□□□□ -0.44
TMEM260-213ENST00000556929 SRCIN1Q9C0H9 1055 aa12.31□□□□□ -0.44
TMEM260-213ENST00000556929 SRP68Q9UHB9 627 aaKnown RBP12.31□□□□□ -0.44
TMEM260-213ENST00000556929 ABCC4O15439 1325 aa12.31□□□□□ -0.44
TMEM260-213ENST00000556929 LINS1Q8NG48 757 aa12.3□□□□□ -0.44
TMEM260-213ENST00000556929 TNNQ9UQP3 1299 aa12.3□□□□□ -0.44
TMEM260-213ENST00000556929 CASZ1Q86V15 1759 aa12.29□□□□□ -0.44
TMEM260-213ENST00000556929 SOCS7O14512 581 aa12.29□□□□□ -0.44
TMEM260-213ENST00000556929 ALDH1L1O75891 902 aa12.29□□□□□ -0.44
TMEM260-213ENST00000556929 BEND3Q5T5X7 828 aa12.29□□□□□ -0.44
TMEM260-213ENST00000556929 INTS3Q68E01 1043 aaKnown RBP12.29□□□□□ -0.44
TMEM260-213ENST00000556929 NLGN1Q8N2Q7 840 aa12.29□□□□□ -0.44
TMEM260-213ENST00000556929 TMEM57Q8N5G2 664 aa12.29□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms