RNA–Protein interactions for RNA: ENST00000556534.1

SCFD1-221, Transcript of sec1 family domain containing 1, humanhuman

TSL 5

Gene SCFD1, Length 864 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-221ENST00000556534 PTCD1O75127 700 aaKnown RBP8.78□□□□□ -1
SCFD1-221ENST00000556534 PDE4CQ08493 712 aa8.78□□□□□ -1
SCFD1-221ENST00000556534 NDFIP2Q9NV92 336 aa8.78□□□□□ -1
SCFD1-221ENST00000556534 GPR25O00155 361 aa8.77□□□□□ -1.01
SCFD1-221ENST00000556534 GAS6Q14393 721 aa8.77□□□□□ -1.01
SCFD1-221ENST00000556534 SAMD5Q5TGI4 173 aa8.77□□□□□ -1.01
SCFD1-221ENST00000556534 LRRC69Q6ZNQ3 347 aa8.77□□□□□ -1.01
SCFD1-221ENST00000556534 ZNF280CQ8ND82 737 aa8.77□□□□□ -1.01
SCFD1-221ENST00000556534 SUSD3Q96L08 255 aa8.77□□□□□ -1.01
SCFD1-221ENST00000556534 SAP130Q9H0E3 1048 aa8.77□□□□□ -1.01
SCFD1-221ENST00000556534 SEPT3Q9UH03 358 aa8.77□□□□□ -1.01
SCFD1-221ENST00000556534 LRFN2Q9ULH4 789 aa8.77□□□□□ -1.01
SCFD1-221ENST00000556534 COX20Q5RI15 118 aa8.76□□□□□ -1.01
SCFD1-221ENST00000556534 B4GALNT3Q6L9W6 998 aa8.76□□□□□ -1.01
SCFD1-221ENST00000556534 FIGNL1Q6PIW4 674 aa8.76□□□□□ -1.01
SCFD1-221ENST00000556534 ZCCHC2Q9C0B9 1178 aaKnown RBP8.76□□□□□ -1.01
SCFD1-221ENST00000556534 KLK14Q9P0G3 267 aa8.76□□□□□ -1.01
SCFD1-221ENST00000556534 BCS1LQ9Y276 419 aa8.76□□□□□ -1.01
SCFD1-221ENST00000556534 FAM157BP0CG42 384 aa8.75□□□□□ -1.01
SCFD1-221ENST00000556534 GMPRP36959 345 aa8.75□□□□□ -1.01
SCFD1-221ENST00000556534 KRT76Q01546 638 aa8.75□□□□□ -1.01
SCFD1-221ENST00000556534 DGKZQ13574 1117 aa8.75□□□□□ -1.01
SCFD1-221ENST00000556534 C16orf46Q6P387 395 aa8.75□□□□□ -1.01
SCFD1-221ENST00000556534 UTP3Q9NQZ2 479 aaKnown RBP eCLIP8.75□□□□□ -1.01
SCFD1-221ENST00000556534 HCN2Q9UL51 889 aa8.75□□□□□ -1.01
SCFD1-221ENST00000556534 GJA3Q9Y6H8 435 aa8.75□□□□□ -1.01
SCFD1-221ENST00000556534 TGFBR3LH3BV60 316 aa8.74□□□□□ -1.01
SCFD1-221ENST00000556534 TNFRSF10BO14763 440 aa8.74□□□□□ -1.01
SCFD1-221ENST00000556534 ATXN7O15265 892 aaPredicted RBP8.74□□□□□ -1.01
SCFD1-221ENST00000556534 BNIP3LO60238 219 aa8.74□□□□□ -1.01
SCFD1-221ENST00000556534 TYRO3Q06418 890 aa8.74□□□□□ -1.01
SCFD1-221ENST00000556534 NAA30Q147X3 362 aaPredicted RBP8.74□□□□□ -1.01
SCFD1-221ENST00000556534 HIF1AQ16665 826 aa8.74□□□□□ -1.01
SCFD1-221ENST00000556534 RNFT1Q5M7Z0 435 aa8.74□□□□□ -1.01
SCFD1-221ENST00000556534 IER5Q5VY09 327 aa8.74□□□□□ -1.01
SCFD1-221ENST00000556534 ABHD17AQ96GS6 310 aa8.74□□□□□ -1.01
SCFD1-221ENST00000556534 COL25A1Q9BXS0 654 aaPredicted RBP8.74□□□□□ -1.01
SCFD1-221ENST00000556534 PCDHGC4Q9Y5F7 938 aa8.74□□□□□ -1.01
SCFD1-221ENST00000556534 DCDC2BA2VCK2 349 aa8.73□□□□□ -1.01
SCFD1-221ENST00000556534 EFSO43281 561 aa8.73□□□□□ -1.01
SCFD1-221ENST00000556534 TRERF1Q96PN7 1200 aa8.73□□□□□ -1.01
SCFD1-221ENST00000556534 TRAIPQ9BWF2 469 aa8.73□□□□□ -1.01
SCFD1-221ENST00000556534 CFHR5Q9BXR6 569 aa8.73□□□□□ -1.01
SCFD1-221ENST00000556534 ANKIB1Q9P2G1 1089 aa8.73□□□□□ -1.01
SCFD1-221ENST00000556534 DMGDHQ9UI17 866 aaKnown RBP8.73□□□□□ -1.01
SCFD1-221ENST00000556534 ATXN7L1Q9ULK2 861 aaPredicted RBP8.73□□□□□ -1.01
SCFD1-221ENST00000556534 TNP2Q05952 138 aa8.72□□□□□ -1.01
SCFD1-221ENST00000556534 C11orf91Q3C1V1 193 aa8.72□□□□□ -1.01
SCFD1-221ENST00000556534 FAM26DQ5JW98 314 aa8.72□□□□□ -1.01
SCFD1-221ENST00000556534 FOXR1Q6PIV2 292 aa8.72□□□□□ -1.01
SCFD1-221ENST00000556534 MAPTP10636 758 aaKnown RBP8.71□□□□□ -1.02
SCFD1-221ENST00000556534 BTLAQ7Z6A9 289 aa8.71□□□□□ -1.02
SCFD1-221ENST00000556534 HELQQ8TDG4 1101 aa8.71□□□□□ -1.02
SCFD1-221ENST00000556534 NEUROD4Q9HD90 331 aa8.71□□□□□ -1.02
SCFD1-221ENST00000556534 PHF24Q9UPV7 400 aa8.71□□□□□ -1.02
SCFD1-221ENST00000556534 KHNYNO15037 678 aaKnown RBP8.7□□□□□ -1.02
SCFD1-221ENST00000556534 BRD1O95696 1058 aa8.7□□□□□ -1.02
SCFD1-221ENST00000556534 TXNDC2Q86VQ3 553 aa8.7□□□□□ -1.02
SCFD1-221ENST00000556534 GTF3C2Q8WUA4 911 aaPredicted RBP8.7□□□□□ -1.02
SCFD1-221ENST00000556534 STRN4Q9NRL3 753 aa8.7□□□□□ -1.02
SCFD1-221ENST00000556534 DNMT3AQ9Y6K1 912 aaPredicted RBP8.7□□□□□ -1.02
SCFD1-221ENST00000556534 FGFR3P22607 806 aa8.69□□□□□ -1.02
SCFD1-221ENST00000556534 ETFBKMTQ8IXQ9 262 aa8.69□□□□□ -1.02
SCFD1-221ENST00000556534 IFT43Q96FT9 208 aa8.69□□□□□ -1.02
SCFD1-221ENST00000556534 MBIPQ9NS73 344 aa8.69□□□□□ -1.02
SCFD1-221ENST00000556534 WIPF1O43516 503 aa8.68□□□□□ -1.02
SCFD1-221ENST00000556534 CD33P20138 364 aa8.68□□□□□ -1.02
SCFD1-221ENST00000556534 GRNP28799 593 aaKnown RBP8.68□□□□□ -1.02
SCFD1-221ENST00000556534 SERPINB4P48594 390 aa8.68□□□□□ -1.02
SCFD1-221ENST00000556534 IDH3AP50213 366 aa8.68□□□□□ -1.02
SCFD1-221ENST00000556534 LAMC2Q13753 1193 aa8.68□□□□□ -1.02
SCFD1-221ENST00000556534 CEP63Q96MT8 703 aa8.68□□□□□ -1.02
SCFD1-221ENST00000556534 CNTNAP3BQ96NU0 1288 aa8.68□□□□□ -1.02
SCFD1-221ENST00000556534 CNTNAP3Q9BZ76 1288 aa8.68□□□□□ -1.02
SCFD1-221ENST00000556534 BRD7Q9NPI1 651 aa8.68□□□□□ -1.02
SCFD1-221ENST00000556534 MTMR7Q9Y216 660 aa8.68□□□□□ -1.02
SCFD1-221ENST00000556534 MX2P20592 715 aa8.67□□□□□ -1.02
SCFD1-221ENST00000556534 BRD2P25440 801 aaKnown RBP8.67□□□□□ -1.02
SCFD1-221ENST00000556534 INPP5BP32019 993 aa8.67□□□□□ -1.02
SCFD1-221ENST00000556534 KCNQ4P56696 695 aa8.67□□□□□ -1.02
SCFD1-221ENST00000556534 ZNF211Q13398 564 aaPredicted RBP8.67□□□□□ -1.02
SCFD1-221ENST00000556534 MTMR3Q13615 1198 aa8.67□□□□□ -1.02
SCFD1-221ENST00000556534 STIM2Q9P246 746 aa8.67□□□□□ -1.02
SCFD1-221ENST00000556534 MICAL2O94851 1124 aa8.66□□□□□ -1.02
SCFD1-221ENST00000556534 ARID4AP29374 1257 aaPredicted RBP8.66□□□□□ -1.02
SCFD1-221ENST00000556534 CTBSQ01459 385 aa8.66□□□□□ -1.02
SCFD1-221ENST00000556534 SFSWAPQ12872 951 aaKnown RBP8.66□□□□□ -1.02
SCFD1-221ENST00000556534 GRIN2CQ14957 1233 aa8.66□□□□□ -1.02
SCFD1-221ENST00000556534 FAM182BQ5T319 152 aa8.66□□□□□ -1.02
SCFD1-221ENST00000556534 TREML1Q86YW5 311 aa8.66□□□□□ -1.02
SCFD1-221ENST00000556534 C2CD2LO14523 706 aa8.65□□□□□ -1.02
SCFD1-221ENST00000556534 ARSDP51689 593 aa8.65□□□□□ -1.02
SCFD1-221ENST00000556534 MARK1Q9P0L2 795 aa8.65□□□□□ -1.02
SCFD1-221ENST00000556534 EGFL7Q9UHF1 273 aa8.65□□□□□ -1.02
SCFD1-221ENST00000556534 GNEQ9Y223 722 aaKnown RBP8.65□□□□□ -1.02
SCFD1-221ENST00000556534 IGF1RP08069 1367 aa8.64□□□□□ -1.03
SCFD1-221ENST00000556534 OPLAHO14841 1288 aa8.64□□□□□ -1.03
SCFD1-221ENST00000556534 ZBTB39O15060 712 aa8.64□□□□□ -1.03
SCFD1-221ENST00000556534 ABL1P00519 1130 aa8.64□□□□□ -1.03
SCFD1-221ENST00000556534 PDIA4P13667 645 aaKnown RBP8.64□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 88.7 ms