RNA–Protein interactions for RNA: ENST00000555934.1

LINC00643-204, long intergenic non-protein coding RNA 643, humanhuman

TSL 2

Gene LINC00643, Length 1,184 nt, Biotype retained intron.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-204ENST00000555934 TIMMDC1Q9NPL8 285 aa10□□□□□ -0.81
LINC00643-204ENST00000555934 MARSP56192 900 aaKnown RBP9.99□□□□□ -0.81
LINC00643-204ENST00000555934 AAMPQ13685 434 aa9.99□□□□□ -0.81
LINC00643-204ENST00000555934 ECM1Q16610 540 aa9.99□□□□□ -0.81
LINC00643-204ENST00000555934 FOXD4L4Q8WXT5 416 aaPredicted RBP9.99□□□□□ -0.81
LINC00643-204ENST00000555934 MYO19Q96H55 970 aa9.99□□□□□ -0.81
LINC00643-204ENST00000555934 STIM2Q9P246 746 aa9.99□□□□□ -0.81
LINC00643-204ENST00000555934 BICDL1Q6ZP65 573 aa9.98□□□□□ -0.81
LINC00643-204ENST00000555934 GPAMQ9HCL2 828 aa9.98□□□□□ -0.81
LINC00643-204ENST00000555934 ZBTB39O15060 712 aa9.97□□□□□ -0.81
LINC00643-204ENST00000555934 FAM13AO94988 1023 aa9.97□□□□□ -0.81
LINC00643-204ENST00000555934 TATP17735 454 aaPredicted RBP9.97□□□□□ -0.81
LINC00643-204ENST00000555934 ARHGAP4P98171 946 aa9.97□□□□□ -0.81
LINC00643-204ENST00000555934 C11orf91Q3C1V1 193 aa9.97□□□□□ -0.81
LINC00643-204ENST00000555934 WDR44Q5JSH3 913 aa9.97□□□□□ -0.81
LINC00643-204ENST00000555934 ATCAYQ86WG3 371 aa9.97□□□□□ -0.81
LINC00643-204ENST00000555934 RGS22Q8NE09 1264 aa9.97□□□□□ -0.81
LINC00643-204ENST00000555934 HSH2DQ96JZ2 352 aa9.97□□□□□ -0.81
LINC00643-204ENST00000555934 BRD2P25440 801 aaKnown RBP9.96□□□□□ -0.82
LINC00643-204ENST00000555934 MSX1P28360 303 aa9.96□□□□□ -0.82
LINC00643-204ENST00000555934 MAPK1P28482 360 aa9.96□□□□□ -0.82
LINC00643-204ENST00000555934 EIF1AXP47813 144 aaKnown RBP9.96□□□□□ -0.82
LINC00643-204ENST00000555934 INSM1Q01101 510 aaPredicted RBP9.96□□□□□ -0.82
LINC00643-204ENST00000555934 PTSQ03393 145 aa9.96□□□□□ -0.82
LINC00643-204ENST00000555934 ARSJQ5FYB0 599 aaPredicted RBP9.96□□□□□ -0.82
LINC00643-204ENST00000555934 C1orf53Q5VUE5 145 aa9.96□□□□□ -0.82
LINC00643-204ENST00000555934 ETFBKMTQ8IXQ9 262 aa9.96□□□□□ -0.82
LINC00643-204ENST00000555934 IFT43Q96FT9 208 aa9.96□□□□□ -0.82
LINC00643-204ENST00000555934 GAS2L1Q99501 681 aaPredicted RBP9.96□□□□□ -0.82
LINC00643-204ENST00000555934 SENP3-EIF4A1A0A087X0R7 540 aa9.95□□□□□ -0.82
LINC00643-204ENST00000555934 ATP4AP20648 1035 aa9.95□□□□□ -0.82
LINC00643-204ENST00000555934 NOM1Q5C9Z4 860 aaKnown RBP9.95□□□□□ -0.82
LINC00643-204ENST00000555934 ZNF280CQ8ND82 737 aa9.95□□□□□ -0.82
LINC00643-204ENST00000555934 ZDHHC3Q9NYG2 299 aa9.95□□□□□ -0.82
LINC00643-204ENST00000555934 TERTO14746 1132 aaKnown RBP9.94□□□□□ -0.82
LINC00643-204ENST00000555934 RUBCNLQ9H714 662 aa9.94□□□□□ -0.82
LINC00643-204ENST00000555934 BCS1LQ9Y276 419 aa9.94□□□□□ -0.82
LINC00643-204ENST00000555934 A0A1B0GTH6 734 aa9.93□□□□□ -0.82
LINC00643-204ENST00000555934 NPR3P17342 541 aa9.93□□□□□ -0.82
LINC00643-204ENST00000555934 LRRC69Q6ZNQ3 347 aa9.93□□□□□ -0.82
LINC00643-204ENST00000555934 ABTB2Q8N961 1025 aa9.93□□□□□ -0.82
LINC00643-204ENST00000555934 C7orf43Q8WVR3 580 aa9.93□□□□□ -0.82
LINC00643-204ENST00000555934 SUSD3Q96L08 255 aa9.93□□□□□ -0.82
LINC00643-204ENST00000555934 NEUROD4Q9HD90 331 aa9.93□□□□□ -0.82
LINC00643-204ENST00000555934 CCDC87Q9NVE4 849 aa9.93□□□□□ -0.82
LINC00643-204ENST00000555934 SLC35F4A4IF30 521 aa9.92□□□□□ -0.82
LINC00643-204ENST00000555934 TREML1Q86YW5 311 aa9.92□□□□□ -0.82
LINC00643-204ENST00000555934 ZIC5Q96T25 663 aa9.92□□□□□ -0.82
LINC00643-204ENST00000555934 DYRK1BQ9Y463 629 aa9.92□□□□□ -0.82
LINC00643-204ENST00000555934 ZAP70P43403 619 aa9.91□□□□□ -0.82
LINC00643-204ENST00000555934 DCTN4Q9UJW0 460 aa9.91□□□□□ -0.82
LINC00643-204ENST00000555934 BRPF3Q9ULD4 1205 aa9.91□□□□□ -0.82
LINC00643-204ENST00000555934 A0A1W2PNR3 127 aa9.9□□□□□ -0.82
LINC00643-204ENST00000555934 FZD6O60353 706 aa9.9□□□□□ -0.82
LINC00643-204ENST00000555934 DNM1Q05193 864 aaKnown RBP9.9□□□□□ -0.82
LINC00643-204ENST00000555934 ALKBH2Q6NS38 261 aa9.9□□□□□ -0.82
LINC00643-204ENST00000555934 DNAJC14Q6Y2X3 702 aaPredicted RBP9.9□□□□□ -0.82
LINC00643-204ENST00000555934 RIPOR1Q6ZS17 1223 aa9.9□□□□□ -0.82
LINC00643-204ENST00000555934 CCDC155Q8N6L0 562 aa9.9□□□□□ -0.82
LINC00643-204ENST00000555934 TMC1Q8TDI8 760 aa9.9□□□□□ -0.82
LINC00643-204ENST00000555934 EDEM1Q92611 657 aa9.9□□□□□ -0.82
LINC00643-204ENST00000555934 USP20Q9Y2K6 914 aa9.9□□□□□ -0.82
LINC00643-204ENST00000555934 GJA3Q9Y6H8 435 aa9.9□□□□□ -0.82
LINC00643-204ENST00000555934 MICAL2O94851 1124 aa9.89□□□□□ -0.83
LINC00643-204ENST00000555934 GPR152Q8TDT2 470 aa9.89□□□□□ -0.83
LINC00643-204ENST00000555934 ANKRD33BA6NCL7 494 aa9.88□□□□□ -0.83
LINC00643-204ENST00000555934 TGFBR3LH3BV60 316 aa9.88□□□□□ -0.83
LINC00643-204ENST00000555934 NDUFB5O43674 189 aa9.88□□□□□ -0.83
LINC00643-204ENST00000555934 F11P03951 625 aa9.88□□□□□ -0.83
LINC00643-204ENST00000555934 PGBD3Q8N328 593 aa9.88□□□□□ -0.83
LINC00643-204ENST00000555934 POLIQ9UNA4 740 aa9.88□□□□□ -0.83
LINC00643-204ENST00000555934 PPFIA3O75145 1194 aa9.87□□□□□ -0.83
LINC00643-204ENST00000555934 IDH3AP50213 366 aa9.87□□□□□ -0.83
LINC00643-204ENST00000555934 ZNF428Q96B54 188 aa9.87□□□□□ -0.83
LINC00643-204ENST00000555934 ANKIB1Q9P2G1 1089 aa9.87□□□□□ -0.83
LINC00643-204ENST00000555934 NXF1Q9UBU9 619 aaKnown RBP9.87□□□□□ -0.83
LINC00643-204ENST00000555934 HIF1AQ16665 826 aa9.86□□□□□ -0.83
LINC00643-204ENST00000555934 RGL4Q8IZJ4 473 aa9.86□□□□□ -0.83
LINC00643-204ENST00000555934 ITGA6P23229 1130 aa9.85□□□□□ -0.83
LINC00643-204ENST00000555934 TMC7Q7Z402 723 aa9.85□□□□□ -0.83
LINC00643-204ENST00000555934 BTLAQ7Z6A9 289 aa9.85□□□□□ -0.83
LINC00643-204ENST00000555934 CEP63Q96MT8 703 aa9.85□□□□□ -0.83
LINC00643-204ENST00000555934 DMGDHQ9UI17 866 aaKnown RBP9.85□□□□□ -0.83
LINC00643-204ENST00000555934 OPLAHO14841 1288 aa9.84□□□□□ -0.83
LINC00643-204ENST00000555934 PDGFAP04085 211 aa9.84□□□□□ -0.83
LINC00643-204ENST00000555934 ZSCAN29Q8IWY8 852 aaPredicted RBP9.84□□□□□ -0.83
LINC00643-204ENST00000555934 NPAS3Q8IXF0 933 aa9.84□□□□□ -0.83
LINC00643-204ENST00000555934 NUDT16Q96DE0 195 aaKnown RBP9.84□□□□□ -0.83
LINC00643-204ENST00000555934 ASB16Q96NS5 453 aa9.84□□□□□ -0.83
LINC00643-204ENST00000555934 CRISPLD1Q9H336 500 aa9.84□□□□□ -0.83
LINC00643-204ENST00000555934 GPC6Q9Y625 555 aaPredicted RBP9.84□□□□□ -0.83
LINC00643-204ENST00000555934 A6NHS1 94 aa9.83□□□□□ -0.84
LINC00643-204ENST00000555934 VEGFBP49765 207 aa9.83□□□□□ -0.84
LINC00643-204ENST00000555934 C8orf34Q49A92 452 aa9.83□□□□□ -0.84
LINC00643-204ENST00000555934 NPM2Q86SE8 214 aaKnown RBP9.83□□□□□ -0.84
LINC00643-204ENST00000555934 CMTR1Q8N1G2 835 aaKnown RBP9.83□□□□□ -0.84
LINC00643-204ENST00000555934 CUEDC1Q9NWM3 386 aaPredicted RBP9.83□□□□□ -0.84
LINC00643-204ENST00000555934 MZF1P28698 734 aaPredicted RBP9.82□□□□□ -0.84
LINC00643-204ENST00000555934 RBM25P49756 843 aaKnown RBP9.82□□□□□ -0.84
LINC00643-204ENST00000555934 EFHC2Q5JST6 749 aa9.82□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms