RNA–Protein interactions for RNA: ENST00000555543.1

VTI1B-205, Transcript of vesicle transport through interaction with t-SNAREs 1B, humanhuman

TSL 2

Gene VTI1B, Length 718 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1B-205ENST00000555543 MBIPQ9NS73 344 aa26.77■■□□□ 1.88
VTI1B-205ENST00000555543 PROSER3Q2NL68 480 aa26.76■■□□□ 1.87
VTI1B-205ENST00000555543 LRP10Q7Z4F1 713 aa26.76■■□□□ 1.87
VTI1B-205ENST00000555543 ZNF652Q9Y2D9 606 aa26.76■■□□□ 1.87
VTI1B-205ENST00000555543 DLEC1Q9Y238 1755 aa26.76■■□□□ 1.87
VTI1B-205ENST00000555543 RGL2O15211 777 aa26.75■■□□□ 1.87
VTI1B-205ENST00000555543 ANXA1P04083 346 aa26.75■■□□□ 1.87
VTI1B-205ENST00000555543 NECTIN2Q92692 538 aa26.75■■□□□ 1.87
VTI1B-205ENST00000555543 PIM2Q9P1W9 311 aa26.74■■□□□ 1.87
VTI1B-205ENST00000555543 MAP3K15Q6ZN16 1313 aa26.73■■□□□ 1.87
VTI1B-205ENST00000555543 CNBD1Q8NA66 436 aa26.73■■□□□ 1.87
VTI1B-205ENST00000555543 IFT57Q9NWB7 429 aa26.73■■□□□ 1.87
VTI1B-205ENST00000555543 ARFGEF1Q9Y6D6 1849 aa26.73■■□□□ 1.87
VTI1B-205ENST00000555543 COL11A2P13942 1736 aaPredicted RBP26.73■■□□□ 1.87
VTI1B-205ENST00000555543 ZNF784Q8NCA9 323 aaPredicted RBP26.72■■□□□ 1.87
VTI1B-205ENST00000555543 ZBTB3Q9H5J0 574 aa26.72■■□□□ 1.87
VTI1B-205ENST00000555543 NIP7Q9Y221 180 aaKnown RBP eCLIP26.72■■□□□ 1.87
VTI1B-205ENST00000555543 NUP98P52948 1817 aa26.72■■□□□ 1.87
VTI1B-205ENST00000555543 ERVV-1B6SEH8 477 aa26.71■■□□□ 1.87
VTI1B-205ENST00000555543 KIF6Q6ZMV9 814 aa26.71■■□□□ 1.87
VTI1B-205ENST00000555543 GNAI1P63096 354 aa26.7■■□□□ 1.86
VTI1B-205ENST00000555543 CALD1Q05682 793 aaKnown RBP26.7■■□□□ 1.86
VTI1B-205ENST00000555543 DALRD3Q5D0E6 543 aaKnown RBP26.7■■□□□ 1.86
VTI1B-205ENST00000555543 C2CD5Q86YS7 1000 aa26.7■■□□□ 1.86
VTI1B-205ENST00000555543 BRIP1Q9BX63 1249 aa26.7■■□□□ 1.86
VTI1B-205ENST00000555543 NBPF5PQ86XG9 351 aaPredicted RBP26.69■■□□□ 1.86
VTI1B-205ENST00000555543 ATP10DQ9P241 1426 aa26.69■■□□□ 1.86
VTI1B-205ENST00000555543 HOXB7P09629 217 aa26.68■■□□□ 1.86
VTI1B-205ENST00000555543 CCDC27Q2M243 656 aa26.68■■□□□ 1.86
VTI1B-205ENST00000555543 DUSP27Q5VZP5 1158 aa26.68■■□□□ 1.86
VTI1B-205ENST00000555543 NPHP1O15259 732 aa26.67■■□□□ 1.86
VTI1B-205ENST00000555543 HDGFL1Q5TGJ6 251 aa26.67■■□□□ 1.86
VTI1B-205ENST00000555543 WWC1Q8IX03 1113 aa26.67■■□□□ 1.86
VTI1B-205ENST00000555543 CHPF2Q9P2E5 772 aa26.67■■□□□ 1.86
VTI1B-205ENST00000555543 FAM177BA6PVY3 158 aa26.66■■□□□ 1.86
VTI1B-205ENST00000555543 H0YIN7 160 aa26.66■■□□□ 1.86
VTI1B-205ENST00000555543 ST5P78524 1137 aa26.66■■□□□ 1.86
VTI1B-205ENST00000555543 DDX21Q9NR30 783 aaKnown RBP eCLIP26.66■■□□□ 1.86
VTI1B-205ENST00000555543 ADCY9O60503 1353 aa26.66■■□□□ 1.86
VTI1B-205ENST00000555543 UBN2Q6ZU65 1347 aa26.65■■□□□ 1.86
VTI1B-205ENST00000555543 PDE6BP35913 854 aa26.65■■□□□ 1.86
VTI1B-205ENST00000555543 ARHGAP27Q6ZUM4 889 aa26.65■■□□□ 1.86
VTI1B-205ENST00000555543 FAM9BQ8IZU0 186 aa26.65■■□□□ 1.86
VTI1B-205ENST00000555543 GPTP24298 496 aa26.64■■□□□ 1.86
VTI1B-205ENST00000555543 GIGYF2Q6Y7W6 1299 aaKnown RBP26.64■■□□□ 1.86
VTI1B-205ENST00000555543 XAGE3Q8WTP9 111 aa26.64■■□□□ 1.86
VTI1B-205ENST00000555543 COPS6Q7L5N1 327 aa26.63■■□□□ 1.85
VTI1B-205ENST00000555543 TSR2Q969E8 191 aaKnown RBP26.63■■□□□ 1.85
VTI1B-205ENST00000555543 AIMP1Q12904 312 aaKnown RBP26.62■■□□□ 1.85
VTI1B-205ENST00000555543 TPTE2Q6XPS3 522 aa26.62■■□□□ 1.85
VTI1B-205ENST00000555543 TTLL6Q8N841 843 aa26.62■■□□□ 1.85
VTI1B-205ENST00000555543 C8orf58Q8NAV2 365 aa26.62■■□□□ 1.85
VTI1B-205ENST00000555543 TNRC6CQ9HCJ0 1690 aaKnown RBP26.62■■□□□ 1.85
VTI1B-205ENST00000555543 ABCC12Q96J65 1359 aa26.61■■□□□ 1.85
VTI1B-205ENST00000555543 ELL2O00472 640 aaPredicted RBP26.61■■□□□ 1.85
VTI1B-205ENST00000555543 NCBP3Q53F19 620 aaKnown RBP26.61■■□□□ 1.85
VTI1B-205ENST00000555543 ZNF34Q8IZ26 560 aa26.61■■□□□ 1.85
VTI1B-205ENST00000555543 PDZRN3Q9UPQ7 1066 aa26.61■■□□□ 1.85
VTI1B-205ENST00000555543 SALL2Q9Y467 1007 aaPredicted RBP26.61■■□□□ 1.85
VTI1B-205ENST00000555543 ZNF622Q969S3 477 aaKnown RBP eCLIP26.6■■□□□ 1.859e-7■■□□□ 11.8
VTI1B-205ENST00000555543 SRGNP10124 158 aa26.59■■□□□ 1.85
VTI1B-205ENST00000555543 NUTM1Q86Y26 1132 aa26.59■■□□□ 1.85
VTI1B-205ENST00000555543 DBF4Q9UBU7 674 aaPredicted RBP26.59■■□□□ 1.85
VTI1B-205ENST00000555543 IBTKQ9P2D0 1353 aaPredicted RBP26.58■■□□□ 1.85
VTI1B-205ENST00000555543 ANKRD36CQ5JPF3 1778 aa26.58■■□□□ 1.85
VTI1B-205ENST00000555543 SUSD4Q5VX71 490 aa26.58■■□□□ 1.85
VTI1B-205ENST00000555543 TSPYL6Q8N831 410 aa26.58■■□□□ 1.85
VTI1B-205ENST00000555543 IL16Q14005 1332 aa26.58■■□□□ 1.85
VTI1B-205ENST00000555543 KLRG2A4D1S0 409 aaPredicted RBP26.57■■□□□ 1.84
VTI1B-205ENST00000555543 NYXQ9GZU5 481 aa26.57■■□□□ 1.84
VTI1B-205ENST00000555543 CACNA1SQ13698 1873 aa26.57■■□□□ 1.84
VTI1B-205ENST00000555543 NTSR2O95665 410 aa26.56■■□□□ 1.84
VTI1B-205ENST00000555543 ERFEQ4G0M1 354 aa26.56■■□□□ 1.84
VTI1B-205ENST00000555543 STYK1Q6J9G0 422 aa26.56■■□□□ 1.84
VTI1B-205ENST00000555543 ARFGEF2Q9Y6D5 1785 aa26.56■■□□□ 1.84
VTI1B-205ENST00000555543 GTF2E1P29083 439 aaPredicted RBP26.55■■□□□ 1.84
VTI1B-205ENST00000555543 MASTLQ96GX5 879 aa26.55■■□□□ 1.84
VTI1B-205ENST00000555543 SLX4Q8IY92 1834 aa26.55■■□□□ 1.84
VTI1B-205ENST00000555543 RASSF7Q02833 373 aa26.54■■□□□ 1.84
VTI1B-205ENST00000555543 HYPKQ9NX55 129 aa26.54■■□□□ 1.84
VTI1B-205ENST00000555543 PARP10Q53GL7 1025 aa26.53■■□□□ 1.84
VTI1B-205ENST00000555543 ZNF219Q9P2Y4 722 aaPredicted RBP26.53■■□□□ 1.84
VTI1B-205ENST00000555543 RIC1Q4ADV7 1423 aa26.53■■□□□ 1.84
VTI1B-205ENST00000555543 C9orf131Q5VYM1 1079 aa26.52■■□□□ 1.84
VTI1B-205ENST00000555543 PRPF40BQ6NWY9 871 aaKnown RBP26.52■■□□□ 1.84
VTI1B-205ENST00000555543 CNKSR1Q969H4 720 aa26.52■■□□□ 1.84
VTI1B-205ENST00000555543 SBF1O95248 1867 aa26.51■■□□□ 1.83
VTI1B-205ENST00000555543 FANCIQ9NVI1 1328 aa26.51■■□□□ 1.83
VTI1B-205ENST00000555543 C21orf2O43822 256 aa26.51■■□□□ 1.83
VTI1B-205ENST00000555543 NPR1P16066 1061 aa26.51■■□□□ 1.83
VTI1B-205ENST00000555543 TCIRG1Q13488 830 aa26.51■■□□□ 1.83
VTI1B-205ENST00000555543 HSP90AB3PQ58FF7 597 aa26.51■■□□□ 1.83
VTI1B-205ENST00000555543 PPP1R42Q7Z4L9 355 aa26.51■■□□□ 1.83
VTI1B-205ENST00000555543 WDR63Q8IWG1 891 aa26.51■■□□□ 1.83
VTI1B-205ENST00000555543 PLBD2Q8NHP8 589 aa26.51■■□□□ 1.83
VTI1B-205ENST00000555543 PHAXQ9H814 394 aaKnown RBP26.51■■□□□ 1.83
VTI1B-205ENST00000555543 NFKBIEO00221 500 aa26.5■■□□□ 1.83
VTI1B-205ENST00000555543 PRELPP51888 382 aa26.5■■□□□ 1.83
VTI1B-205ENST00000555543 ANKRD13DQ6ZTN6 518 aa26.5■■□□□ 1.83
VTI1B-205ENST00000555543 NLRP10Q86W26 655 aa26.5■■□□□ 1.83
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms