RNA–Protein interactions for RNA: ENST00000554928.1

SYNE2-214, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 3

Gene SYNE2, Length 1,048 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-214ENST00000554928 HLFQ16534 295 aa16.07■□□□□ 0.16
SYNE2-214ENST00000554928 ZNF521Q96K83 1311 aa16.07■□□□□ 0.16
SYNE2-214ENST00000554928 CHPF2Q9P2E5 772 aa16.06■□□□□ 0.16
SYNE2-214ENST00000554928 WWC3Q9ULE0 1092 aa16.06■□□□□ 0.16
SYNE2-214ENST00000554928 PARP3Q9Y6F1 533 aa16.06■□□□□ 0.16
SYNE2-214ENST00000554928 C10orf71Q711Q0 1435 aa16.05■□□□□ 0.16
SYNE2-214ENST00000554928 IL16Q14005 1332 aa16.05■□□□□ 0.16
SYNE2-214ENST00000554928 FANCIQ9NVI1 1328 aa16.05■□□□□ 0.16
SYNE2-214ENST00000554928 HDGFL1Q5TGJ6 251 aa16.05■□□□□ 0.16
SYNE2-214ENST00000554928 WDR63Q8IWG1 891 aa16.05■□□□□ 0.16
SYNE2-214ENST00000554928 CCDC24Q8N4L8 307 aa16.05■□□□□ 0.16
SYNE2-214ENST00000554928 BCORQ6W2J9 1755 aa16.05■□□□□ 0.16
SYNE2-214ENST00000554928 CARMIL3Q8ND23 1372 aa16.04■□□□□ 0.16
SYNE2-214ENST00000554928 ERBB4Q15303 1308 aa16.04■□□□□ 0.16
SYNE2-214ENST00000554928 CAPN15O75808 1086 aa16.04■□□□□ 0.16
SYNE2-214ENST00000554928 ZBTB3Q9H5J0 574 aa16.04■□□□□ 0.16
SYNE2-214ENST00000554928 CD2APQ9Y5K6 639 aa16.04■□□□□ 0.16
SYNE2-214ENST00000554928 TCERG1O14776 1098 aaKnown RBP16.03■□□□□ 0.16
SYNE2-214ENST00000554928 SERPINB2P05120 415 aa16.03■□□□□ 0.16
SYNE2-214ENST00000554928 HOXB7P09629 217 aa16.03■□□□□ 0.16
SYNE2-214ENST00000554928 NPM2Q86SE8 214 aaKnown RBP16.03■□□□□ 0.16
SYNE2-214ENST00000554928 XAGE3Q8WTP9 111 aa16.03■□□□□ 0.16
SYNE2-214ENST00000554928 MAP3K15Q6ZN16 1313 aa16.02■□□□□ 0.16
SYNE2-214ENST00000554928 AIMP1Q12904 312 aaKnown RBP16.02■□□□□ 0.16
SYNE2-214ENST00000554928 DDX21Q9NR30 783 aaKnown RBP eCLIP16.02■□□□□ 0.16
SYNE2-214ENST00000554928 PXDNLA1KZ92 1463 aa16.02■□□□□ 0.15
SYNE2-214ENST00000554928 EXOSC9Q06265 439 aaKnown RBP16.01■□□□□ 0.15
SYNE2-214ENST00000554928 COPS6Q7L5N1 327 aa16.01■□□□□ 0.15
SYNE2-214ENST00000554928 KIAA1551Q9HCM1 1747 aa16.01■□□□□ 0.15
SYNE2-214ENST00000554928 A0A0G2JLW4 131 aa16■□□□□ 0.15
SYNE2-214ENST00000554928 FAM177BA6PVY3 158 aa16■□□□□ 0.15
SYNE2-214ENST00000554928 DPEP1P16444 411 aa16■□□□□ 0.15
SYNE2-214ENST00000554928 YBX3P16989 372 aaKnown RBP eCLIP16■□□□□ 0.15
SYNE2-214ENST00000554928 AFDNP55196 1824 aaKnown RBP16■□□□□ 0.15
SYNE2-214ENST00000554928 NRXN2Q9P2S2 1712 aa15.99■□□□□ 0.15
SYNE2-214ENST00000554928 ERVV-1B6SEH8 477 aa15.99■□□□□ 0.15
SYNE2-214ENST00000554928 GPTP24298 496 aa15.99■□□□□ 0.15
SYNE2-214ENST00000554928 CHRNA5P30532 468 aa15.99■□□□□ 0.15
SYNE2-214ENST00000554928 TWISTNBQ3B726 338 aaPredicted RBP15.99■□□□□ 0.15
SYNE2-214ENST00000554928 PRR5LQ6MZQ0 368 aa15.99■□□□□ 0.15
SYNE2-214ENST00000554928 CLEC4GQ6UXB4 293 aa15.99■□□□□ 0.15
SYNE2-214ENST00000554928 KIF6Q6ZMV9 814 aa15.99■□□□□ 0.15
SYNE2-214ENST00000554928 PELP1Q8IZL8 1130 aaKnown RBP15.99■□□□□ 0.15
SYNE2-214ENST00000554928 ZNF428Q96B54 188 aa15.99■□□□□ 0.15
SYNE2-214ENST00000554928 CDCA7LQ96GN5 454 aa15.99■□□□□ 0.15
SYNE2-214ENST00000554928 SETDB2Q96T68 719 aa15.99■□□□□ 0.15
SYNE2-214ENST00000554928 PHAXQ9H814 394 aaKnown RBP15.99■□□□□ 0.15
SYNE2-214ENST00000554928 NIP7Q9Y221 180 aaKnown RBP eCLIP15.99■□□□□ 0.15
SYNE2-214ENST00000554928 GOLGB1Q14789 3259 aaKnown RBP15.99■□□□□ 0.15
SYNE2-214ENST00000554928 KIF13BQ9NQT8 1826 aa15.98■□□□□ 0.15
SYNE2-214ENST00000554928 UBN2Q6ZU65 1347 aa15.98■□□□□ 0.15
SYNE2-214ENST00000554928 KCNA3P22001 575 aa15.98■□□□□ 0.15
SYNE2-214ENST00000554928 DBF4Q9UBU7 674 aaPredicted RBP15.98■□□□□ 0.15
SYNE2-214ENST00000554928 DSG3P32926 999 aa15.97■□□□□ 0.15
SYNE2-214ENST00000554928 ZNF652Q9Y2D9 606 aa15.97■□□□□ 0.15
SYNE2-214ENST00000554928 ATP10DQ9P241 1426 aa15.96■□□□□ 0.15
SYNE2-214ENST00000554928 N4BP2Q86UW6 1770 aaPredicted RBP15.96■□□□□ 0.15
SYNE2-214ENST00000554928 VAMP4O75379 141 aa15.96■□□□□ 0.15
SYNE2-214ENST00000554928 GOLGA2Q08379 1002 aa15.96■□□□□ 0.15
SYNE2-214ENST00000554928 GIGYF2Q6Y7W6 1299 aaKnown RBP15.96■□□□□ 0.15
SYNE2-214ENST00000554928 G2E3Q7L622 706 aa15.96■□□□□ 0.15
SYNE2-214ENST00000554928 ZNF34Q8IZ26 560 aa15.96■□□□□ 0.15
SYNE2-214ENST00000554928 UTRNP46939 3433 aa15.96■□□□□ 0.15
SYNE2-214ENST00000554928 RGL2O15211 777 aa15.95■□□□□ 0.14
SYNE2-214ENST00000554928 TGFB2P61812 414 aa15.95■□□□□ 0.14
SYNE2-214ENST00000554928 GPR162Q16538 588 aa15.95■□□□□ 0.14
SYNE2-214ENST00000554928 SUSD4Q5VX71 490 aa15.95■□□□□ 0.14
SYNE2-214ENST00000554928 CNBD1Q8NA66 436 aa15.95■□□□□ 0.14
SYNE2-214ENST00000554928 SLFN5Q08AF3 891 aa15.94■□□□□ 0.14
SYNE2-214ENST00000554928 CCDC30Q5VVM6 783 aa15.94■□□□□ 0.14
SYNE2-214ENST00000554928 NBPF5PQ86XG9 351 aaPredicted RBP15.94■□□□□ 0.14
SYNE2-214ENST00000554928 NUTM1Q86Y26 1132 aa15.94■□□□□ 0.14
SYNE2-214ENST00000554928 MYH16Q9H6N6 1097 aa15.94■□□□□ 0.14
SYNE2-214ENST00000554928 HYPKQ9NX55 129 aa15.94■□□□□ 0.14
SYNE2-214ENST00000554928 ABCC12Q96J65 1359 aa15.94■□□□□ 0.14
SYNE2-214ENST00000554928 NUP98P52948 1817 aa15.94■□□□□ 0.14
SYNE2-214ENST00000554928 ANKRD31Q8N7Z5 1873 aa15.93■□□□□ 0.14
SYNE2-214ENST00000554928 NTSR2O95665 410 aa15.92■□□□□ 0.14
SYNE2-214ENST00000554928 TCIRG1Q13488 830 aa15.92■□□□□ 0.14
SYNE2-214ENST00000554928 ERFEQ4G0M1 354 aa15.92■□□□□ 0.14
SYNE2-214ENST00000554928 ANKRD13DQ6ZTN6 518 aa15.92■□□□□ 0.14
SYNE2-214ENST00000554928 C2CD5Q86YS7 1000 aa15.92■□□□□ 0.14
SYNE2-214ENST00000554928 SYNE4Q8N205 404 aa15.92■□□□□ 0.14
SYNE2-214ENST00000554928 PLBD2Q8NHP8 589 aa15.92■□□□□ 0.14
SYNE2-214ENST00000554928 E9PSI1 815 aa15.91■□□□□ 0.14
SYNE2-214ENST00000554928 ATP5J2-PTCD1G3V325 749 aa15.91■□□□□ 0.14
SYNE2-214ENST00000554928 SAMD1Q6SPF0 538 aaPredicted RBP15.91■□□□□ 0.14
SYNE2-214ENST00000554928 C3orf67Q6ZVT6 689 aa15.91■□□□□ 0.14
SYNE2-214ENST00000554928 TRMT2AQ8IZ69 625 aaKnown RBP15.91■□□□□ 0.14
SYNE2-214ENST00000554928 BRIP1Q9BX63 1249 aa15.91■□□□□ 0.14
SYNE2-214ENST00000554928 BCS1LQ9Y276 419 aa15.91■□□□□ 0.14
SYNE2-214ENST00000554928 NPHP1O15259 732 aa15.9■□□□□ 0.14
SYNE2-214ENST00000554928 ST5P78524 1137 aa15.9■□□□□ 0.14
SYNE2-214ENST00000554928 HNRNPUQ00839 825 aaKnown RBP eCLIP15.9■□□□□ 0.14
SYNE2-214ENST00000554928 NLRP10Q86W26 655 aa15.9■□□□□ 0.14
SYNE2-214ENST00000554928 ISCA1Q9BUE6 129 aa15.9■□□□□ 0.14
SYNE2-214ENST00000554928 COL11A2P13942 1736 aaPredicted RBP15.9■□□□□ 0.14
SYNE2-214ENST00000554928 TNRC6CQ9HCJ0 1690 aaKnown RBP15.89■□□□□ 0.13
SYNE2-214ENST00000554928 ADCY9O60503 1353 aa15.89■□□□□ 0.13
SYNE2-214ENST00000554928 TPTE2Q6XPS3 522 aa15.89■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms