RNA–Protein interactions for RNA: ENST00000553280.1

SCFD1-209, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 574 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-209ENST00000553280 IGFBP4P22692 258 aa8.34□□□□□ -1.07
SCFD1-209ENST00000553280 MSX1P28360 303 aa8.34□□□□□ -1.07
SCFD1-209ENST00000553280 SRSF11Q05519 484 aaKnown RBP8.34□□□□□ -1.07
SCFD1-209ENST00000553280 ZNF211Q13398 564 aaPredicted RBP8.34□□□□□ -1.07
SCFD1-209ENST00000553280 SF3B2Q13435 895 aaKnown RBP8.34□□□□□ -1.07
SCFD1-209ENST00000553280 GLYCTKQ8IVS8 523 aa8.34□□□□□ -1.07
SCFD1-209ENST00000553280 TUT1Q9H6E5 874 aaKnown RBP8.34□□□□□ -1.07
SCFD1-209ENST00000553280 ANO2Q9NQ90 1003 aa8.34□□□□□ -1.07
SCFD1-209ENST00000553280 DNMT3AQ9Y6K1 912 aaPredicted RBP8.34□□□□□ -1.07
SCFD1-209ENST00000553280 ANKRD33BA6NCL7 494 aa8.33□□□□□ -1.08
SCFD1-209ENST00000553280 SMTNP53814 917 aa8.33□□□□□ -1.08
SCFD1-209ENST00000553280 LYPD4Q6UWN0 246 aa8.33□□□□□ -1.08
SCFD1-209ENST00000553280 CAPN12Q6ZSI9 719 aa8.33□□□□□ -1.08
SCFD1-209ENST00000553280 MBIPQ9NS73 344 aa8.33□□□□□ -1.08
SCFD1-209ENST00000553280 ADAMTS8Q9UP79 889 aa8.33□□□□□ -1.08
SCFD1-209ENST00000553280 NPAS4Q8IUM7 802 aa8.32□□□□□ -1.08
SCFD1-209ENST00000553280 PGBD3Q8N328 593 aa8.32□□□□□ -1.08
SCFD1-209ENST00000553280 GAS2L2Q8NHY3 880 aa8.32□□□□□ -1.08
SCFD1-209ENST00000553280 AIDAQ96BJ3 306 aa8.32□□□□□ -1.08
SCFD1-209ENST00000553280 MKNK1Q9BUB5 465 aa8.32□□□□□ -1.08
SCFD1-209ENST00000553280 BCL2L13Q9BXK5 485 aa8.32□□□□□ -1.08
SCFD1-209ENST00000553280 USP3Q9Y6I4 520 aa8.32□□□□□ -1.08
SCFD1-209ENST00000553280 IGF1RP08069 1367 aa8.32□□□□□ -1.08
SCFD1-209ENST00000553280 FOXO3O43524 673 aa8.31□□□□□ -1.08
SCFD1-209ENST00000553280 ZNF16P17020 682 aaPredicted RBP8.31□□□□□ -1.08
SCFD1-209ENST00000553280 SLC4A9Q96Q91 983 aa8.31□□□□□ -1.08
SCFD1-209ENST00000553280 NIFKQ9BYG3 293 aaKnown RBP8.31□□□□□ -1.08
SCFD1-209ENST00000553280 A6NJY4 79 aa8.3□□□□□ -1.08
SCFD1-209ENST00000553280 MX2P20592 715 aa8.3□□□□□ -1.08
SCFD1-209ENST00000553280 EPHA4P54764 986 aa8.3□□□□□ -1.08
SCFD1-209ENST00000553280 ARHGAP4P98171 946 aa8.3□□□□□ -1.08
SCFD1-209ENST00000553280 TNS4Q8IZW8 715 aa8.3□□□□□ -1.08
SCFD1-209ENST00000553280 SCG3Q8WXD2 468 aaKnown RBP8.3□□□□□ -1.08
SCFD1-209ENST00000553280 ATAD2Q6PL18 1390 aa8.3□□□□□ -1.08
SCFD1-209ENST00000553280 ARHGEF15O94989 841 aa8.29□□□□□ -1.08
SCFD1-209ENST00000553280 CELA2BP08218 269 aaPredicted RBP8.29□□□□□ -1.08
SCFD1-209ENST00000553280 NPR3P17342 541 aa8.29□□□□□ -1.08
SCFD1-209ENST00000553280 EFHC2Q5JST6 749 aa8.29□□□□□ -1.08
SCFD1-209ENST00000553280 HELQQ8TDG4 1101 aa8.29□□□□□ -1.08
SCFD1-209ENST00000553280 ASB16Q96NS5 453 aa8.29□□□□□ -1.08
SCFD1-209ENST00000553280 CABP1Q9NZU7 370 aa8.29□□□□□ -1.08
SCFD1-209ENST00000553280 KIAA1522Q9P206 1035 aaPredicted RBP8.29□□□□□ -1.08
SCFD1-209ENST00000553280 DCTN4Q9UJW0 460 aa8.29□□□□□ -1.08
SCFD1-209ENST00000553280 PARP3Q9Y6F1 533 aa8.29□□□□□ -1.08
SCFD1-209ENST00000553280 MAP3K10Q02779 954 aa8.28□□□□□ -1.08
SCFD1-209ENST00000553280 MTMR3Q13615 1198 aa8.28□□□□□ -1.08
SCFD1-209ENST00000553280 NAA30Q147X3 362 aaPredicted RBP8.28□□□□□ -1.08
SCFD1-209ENST00000553280 MTFR1Q15390 333 aa8.28□□□□□ -1.08
SCFD1-209ENST00000553280 MRRFQ96E11 262 aaKnown RBP8.28□□□□□ -1.08
SCFD1-209ENST00000553280 UTP3Q9NQZ2 479 aaKnown RBP eCLIP8.28□□□□□ -1.08
SCFD1-209ENST00000553280 IGSF5Q9NSI5 407 aa8.28□□□□□ -1.08
SCFD1-209ENST00000553280 CDK2AP1O14519 115 aa8.27□□□□□ -1.09
SCFD1-209ENST00000553280 MAPK1P28482 360 aa8.27□□□□□ -1.09
SCFD1-209ENST00000553280 UBAP2LQ14157 1087 aaKnown RBP8.27□□□□□ -1.09
SCFD1-209ENST00000553280 TBCELQ5QJ74 424 aa8.27□□□□□ -1.09
SCFD1-209ENST00000553280 ZSCAN29Q8IWY8 852 aaPredicted RBP8.27□□□□□ -1.09
SCFD1-209ENST00000553280 GIPC2Q8TF65 315 aa8.27□□□□□ -1.09
SCFD1-209ENST00000553280 ACDQ96AP0 544 aa8.27□□□□□ -1.09
SCFD1-209ENST00000553280 CFHR5Q9BXR6 569 aa8.27□□□□□ -1.09
SCFD1-209ENST00000553280 TSPAN10Q9H1Z9 355 aaPredicted RBP8.27□□□□□ -1.09
SCFD1-209ENST00000553280 IQSEC3Q9UPP2 1182 aaPredicted RBP8.27□□□□□ -1.09
SCFD1-209ENST00000553280 FAM13AO94988 1023 aa8.26□□□□□ -1.09
SCFD1-209ENST00000553280 ATP4AP20648 1035 aa8.26□□□□□ -1.09
SCFD1-209ENST00000553280 FOXK2Q01167 660 aa8.26□□□□□ -1.09
SCFD1-209ENST00000553280 LBRQ14739 615 aaKnown RBP8.26□□□□□ -1.09
SCFD1-209ENST00000553280 COL19A1Q14993 1142 aa8.26□□□□□ -1.09
SCFD1-209ENST00000553280 ZNF326Q5BKZ1 582 aaKnown RBP8.26□□□□□ -1.09
SCFD1-209ENST00000553280 ZNF295-AS1Q8N0V1 137 aa8.26□□□□□ -1.09
SCFD1-209ENST00000553280 STAG2Q8N3U4 1231 aa8.26□□□□□ -1.09
SCFD1-209ENST00000553280 ABHD17AQ96GS6 310 aa8.26□□□□□ -1.09
SCFD1-209ENST00000553280 PHF24Q9UPV7 400 aa8.26□□□□□ -1.09
SCFD1-209ENST00000553280 NBPF1Q3BBV0 1214 aa8.25□□□□□ -1.09
SCFD1-209ENST00000553280 ARSJQ5FYB0 599 aaPredicted RBP8.25□□□□□ -1.09
SCFD1-209ENST00000553280 VTI1AQ96AJ9 217 aa8.25□□□□□ -1.09
SCFD1-209ENST00000553280 CRISPLD1Q9H336 500 aa8.25□□□□□ -1.09
SCFD1-209ENST00000553280 SCHIP1Q9P0W5 487 aaPredicted RBP8.25□□□□□ -1.09
SCFD1-209ENST00000553280 NSFL1CQ9UNZ2 370 aaKnown RBP8.25□□□□□ -1.09
SCFD1-209ENST00000553280 BNIP3LO60238 219 aa8.24□□□□□ -1.09
SCFD1-209ENST00000553280 FBXO33Q7Z6M2 555 aa8.24□□□□□ -1.09
SCFD1-209ENST00000553280 CHMP7Q8WUX9 453 aaPredicted RBP8.24□□□□□ -1.09
SCFD1-209ENST00000553280 A0A1W2PNR3 127 aa8.23□□□□□ -1.09
SCFD1-209ENST00000553280 PPP1R12BO60237 982 aaPredicted RBP8.23□□□□□ -1.09
SCFD1-209ENST00000553280 BCRP11274 1271 aa8.23□□□□□ -1.09
SCFD1-209ENST00000553280 TATP17735 454 aaPredicted RBP8.23□□□□□ -1.09
SCFD1-209ENST00000553280 KCNMA1Q12791 1236 aa8.23□□□□□ -1.09
SCFD1-209ENST00000553280 C16orf46Q6P387 395 aa8.23□□□□□ -1.09
SCFD1-209ENST00000553280 SLC9A9Q8IVB4 645 aa8.23□□□□□ -1.09
SCFD1-209ENST00000553280 RGL4Q8IZJ4 473 aa8.23□□□□□ -1.09
SCFD1-209ENST00000553280 C2orf49Q9BVC5 232 aaPredicted RBP8.23□□□□□ -1.09
SCFD1-209ENST00000553280 ZCCHC2Q9C0B9 1178 aaKnown RBP8.23□□□□□ -1.09
SCFD1-209ENST00000553280 ATXN7L1Q9ULK2 861 aaPredicted RBP8.23□□□□□ -1.09
SCFD1-209ENST00000553280 DCDC2BA2VCK2 349 aa8.22□□□□□ -1.09
SCFD1-209ENST00000553280 FGFR3P22607 806 aa8.22□□□□□ -1.09
SCFD1-209ENST00000553280 TXLNAP40222 546 aa8.22□□□□□ -1.09
SCFD1-209ENST00000553280 MAP2K3P46734 347 aa8.22□□□□□ -1.09
SCFD1-209ENST00000553280 GSK3AP49840 483 aa8.22□□□□□ -1.09
SCFD1-209ENST00000553280 CTBSQ01459 385 aa8.22□□□□□ -1.09
SCFD1-209ENST00000553280 NEDD1Q8NHV4 660 aa8.22□□□□□ -1.09
SCFD1-209ENST00000553280 ZDHHC1Q8WTX9 485 aa8.22□□□□□ -1.09
SCFD1-209ENST00000553280 KLRG1Q96E93 195 aa8.22□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms