RNA–Protein interactions for RNA: ENST00000550611.1

LIMA1-206, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 543 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-206ENST00000550611 KRTAP9-9Q9BYP9 154 aa6.81□□□□□ -1.32
LIMA1-206ENST00000550611 KRTAP9-4Q9BYQ2 154 aa6.81□□□□□ -1.32
LIMA1-206ENST00000550611 DOLKQ9UPQ8 538 aa6.81□□□□□ -1.32
LIMA1-206ENST00000550611 INHAP05111 366 aa6.8□□□□□ -1.32
LIMA1-206ENST00000550611 SCNN1DP51172 638 aa6.8□□□□□ -1.32
LIMA1-206ENST00000550611 MARK1Q9P0L2 795 aa6.8□□□□□ -1.32
LIMA1-206ENST00000550611 CHIC2Q9UKJ5 165 aa6.8□□□□□ -1.32
LIMA1-206ENST00000550611 CHD1O14646 1710 aa6.79□□□□□ -1.32
LIMA1-206ENST00000550611 RSF1Q96T23 1441 aaPredicted RBP6.79□□□□□ -1.32
LIMA1-206ENST00000550611 ADARB2-AS1A8MUL3 147 aa6.79□□□□□ -1.32
LIMA1-206ENST00000550611 H2AFB1P0C5Y9 115 aa6.79□□□□□ -1.32
LIMA1-206ENST00000550611 H2AFB2P0C5Z0 115 aa6.79□□□□□ -1.32
LIMA1-206ENST00000550611 TATP17735 454 aaPredicted RBP6.79□□□□□ -1.32
LIMA1-206ENST00000550611 SMTNP53814 917 aa6.79□□□□□ -1.32
LIMA1-206ENST00000550611 COL9A3Q14050 684 aaPredicted RBP6.79□□□□□ -1.32
LIMA1-206ENST00000550611 LRP8Q14114 963 aa6.79□□□□□ -1.32
LIMA1-206ENST00000550611 KRTAP19-1Q8IUB9 90 aa6.79□□□□□ -1.32
LIMA1-206ENST00000550611 ZIC5Q96T25 663 aa6.79□□□□□ -1.32
LIMA1-206ENST00000550611 WIZO95785 1651 aa6.79□□□□□ -1.32
LIMA1-206ENST00000550611 APBB1O00213 710 aa6.78□□□□□ -1.32
LIMA1-206ENST00000550611 SIN3BO75182 1162 aa6.78□□□□□ -1.32
LIMA1-206ENST00000550611 GDF10P55107 478 aa6.78□□□□□ -1.32
LIMA1-206ENST00000550611 TSGA10IPQ3SY00 556 aa6.78□□□□□ -1.32
LIMA1-206ENST00000550611 MTMR14Q8NCE2 650 aa6.78□□□□□ -1.32
LIMA1-206ENST00000550611 FBXO41Q8TF61 875 aa6.78□□□□□ -1.32
LIMA1-206ENST00000550611 TRIM28Q13263 835 aaKnown RBP6.77□□□□□ -1.33
LIMA1-206ENST00000550611 SYT9Q86SS6 491 aa6.77□□□□□ -1.33
LIMA1-206ENST00000550611 STRN4Q9NRL3 753 aa6.77□□□□□ -1.33
LIMA1-206ENST00000550611 M0R082 166 aa6.76□□□□□ -1.33
LIMA1-206ENST00000550611 CDK2AP1O14519 115 aa6.76□□□□□ -1.33
LIMA1-206ENST00000550611 ZNF417Q8TAU3 575 aa6.76□□□□□ -1.33
LIMA1-206ENST00000550611 SLC4A9Q96Q91 983 aa6.76□□□□□ -1.33
LIMA1-206ENST00000550611 ZNF587Q96SQ5 575 aaPredicted RBP6.76□□□□□ -1.33
LIMA1-206ENST00000550611 GOLGA2P5Q9HBQ8 144 aa6.76□□□□□ -1.33
LIMA1-206ENST00000550611 IQSEC3Q9UPP2 1182 aaPredicted RBP6.76□□□□□ -1.33
LIMA1-206ENST00000550611 GJA3Q9Y6H8 435 aa6.76□□□□□ -1.33
LIMA1-206ENST00000550611 IFT140Q96RY7 1462 aa6.76□□□□□ -1.33
LIMA1-206ENST00000550611 LMTK3Q96Q04 1460 aa6.75□□□□□ -1.33
LIMA1-206ENST00000550611 MTFR1Q15390 333 aa6.75□□□□□ -1.33
LIMA1-206ENST00000550611 SLFNL1Q499Z3 407 aa6.75□□□□□ -1.33
LIMA1-206ENST00000550611 TNFRSF25Q93038 417 aa6.75□□□□□ -1.33
LIMA1-206ENST00000550611 STARD13Q9Y3M8 1113 aa6.75□□□□□ -1.33
LIMA1-206ENST00000550611 KRTAP4-8A0A0G2JLE6 195 aa6.74□□□□□ -1.33
LIMA1-206ENST00000550611 C9orf172C9J069 976 aa6.74□□□□□ -1.33
LIMA1-206ENST00000550611 FAM229AH3BQW9 127 aa6.74□□□□□ -1.33
LIMA1-206ENST00000550611 EIF4G2P78344 907 aaKnown RBP eCLIP6.74□□□□□ -1.33
LIMA1-206ENST00000550611 A6NJY4 79 aa6.73□□□□□ -1.33
LIMA1-206ENST00000550611 HYAL3O43820 417 aaPredicted RBP6.73□□□□□ -1.33
LIMA1-206ENST00000550611 NID1P14543 1247 aa6.73□□□□□ -1.33
LIMA1-206ENST00000550611 ADGRE1Q14246 886 aa6.73□□□□□ -1.33
LIMA1-206ENST00000550611 OXLD1Q5BKU9 147 aa6.73□□□□□ -1.33
LIMA1-206ENST00000550611 MICALL1Q8N3F8 863 aa6.73□□□□□ -1.33
LIMA1-206ENST00000550611 CHMP7Q8WUX9 453 aaPredicted RBP6.73□□□□□ -1.33
LIMA1-206ENST00000550611 ALBP02768 609 aa6.72□□□□□ -1.33
LIMA1-206ENST00000550611 GRIK4Q16099 956 aa6.72□□□□□ -1.33
LIMA1-206ENST00000550611 MAP7D1Q3KQU3 841 aa6.72□□□□□ -1.33
LIMA1-206ENST00000550611 EIF4G3O43432 1585 aaKnown RBP6.72□□□□□ -1.33
LIMA1-206ENST00000550611 GAPVD1Q14C86 1478 aa6.72□□□□□ -1.33
LIMA1-206ENST00000550611 TOP2AP11388 1531 aaKnown RBP6.71□□□□□ -1.33
LIMA1-206ENST00000550611 FAM69CQ0P6D2 419 aa6.71□□□□□ -1.34
LIMA1-206ENST00000550611 MBTPS1Q14703 1052 aa6.71□□□□□ -1.34
LIMA1-206ENST00000550611 BICDL1Q6ZP65 573 aa6.71□□□□□ -1.34
LIMA1-206ENST00000550611 CABP1Q9NZU7 370 aa6.71□□□□□ -1.34
LIMA1-206ENST00000550611 GPC6Q9Y625 555 aaPredicted RBP6.71□□□□□ -1.34
LIMA1-206ENST00000550611 USP3Q9Y6I4 520 aa6.71□□□□□ -1.34
LIMA1-206ENST00000550611 TMEM229AB2RXF0 380 aa6.7□□□□□ -1.34
LIMA1-206ENST00000550611 ELNP15502 786 aa6.7□□□□□ -1.34
LIMA1-206ENST00000550611 NRG1Q02297 640 aaPredicted RBP6.7□□□□□ -1.34
LIMA1-206ENST00000550611 C20orf204Q6ZNR8 217 aa6.7□□□□□ -1.34
LIMA1-206ENST00000550611 TXNRD3Q86VQ6 643 aa6.7□□□□□ -1.34
LIMA1-206ENST00000550611 LENG1Q96BZ8 264 aaPredicted RBP6.7□□□□□ -1.34
LIMA1-206ENST00000550611 SNRKQ9NRH2 765 aa6.7□□□□□ -1.34
LIMA1-206ENST00000550611 SERTAD1Q9UHV2 236 aa6.7□□□□□ -1.34
LIMA1-206ENST00000550611 TDRD9Q8NDG6 1382 aaKnown RBP6.69□□□□□ -1.34
LIMA1-206ENST00000550611 CCDC88BA6NC98 1476 aa6.69□□□□□ -1.34
LIMA1-206ENST00000550611 SELPP16109 830 aa6.69□□□□□ -1.34
LIMA1-206ENST00000550611 ADH7P40394 386 aa6.69□□□□□ -1.34
LIMA1-206ENST00000550611 TOPBP1Q92547 1522 aa6.69□□□□□ -1.34
LIMA1-206ENST00000550611 CLASP1Q7Z460 1538 aa6.68□□□□□ -1.34
LIMA1-206ENST00000550611 TXLNAP40222 546 aa6.68□□□□□ -1.34
LIMA1-206ENST00000550611 NEUROD1Q13562 356 aa6.68□□□□□ -1.34
LIMA1-206ENST00000550611 C8orf86Q6ZUL3 223 aa6.68□□□□□ -1.34
LIMA1-206ENST00000550611 SLC30A3Q99726 388 aa6.68□□□□□ -1.34
LIMA1-206ENST00000550611 HECW2Q9P2P5 1572 aa6.68□□□□□ -1.34
LIMA1-206ENST00000550611 ABCC8Q09428 1581 aa6.67□□□□□ -1.34
LIMA1-206ENST00000550611 ERCC6L2Q5T890 1561 aa6.67□□□□□ -1.34
LIMA1-206ENST00000550611 TRAPPC3LQ5T215 181 aa6.67□□□□□ -1.34
LIMA1-206ENST00000550611 LRRC69Q6ZNQ3 347 aa6.67□□□□□ -1.34
LIMA1-206ENST00000550611 C7orf43Q8WVR3 580 aa6.67□□□□□ -1.34
LIMA1-206ENST00000550611 SCHIP1Q9P0W5 487 aaPredicted RBP6.67□□□□□ -1.34
LIMA1-206ENST00000550611 EML1O00423 815 aa6.66□□□□□ -1.34
LIMA1-206ENST00000550611 LILRB5O75023 590 aa6.66□□□□□ -1.34
LIMA1-206ENST00000550611 SPEM2Q0P670 501 aa6.66□□□□□ -1.34
LIMA1-206ENST00000550611 SFSWAPQ12872 951 aaKnown RBP6.66□□□□□ -1.34
LIMA1-206ENST00000550611 TEAD4Q15561 434 aa6.66□□□□□ -1.34
LIMA1-206ENST00000550611 PLPP7Q8NBV4 271 aa6.66□□□□□ -1.34
LIMA1-206ENST00000550611 SSBP4Q9BWG4 385 aaPredicted RBP6.66□□□□□ -1.34
LIMA1-206ENST00000550611 PARP3Q9Y6F1 533 aa6.66□□□□□ -1.34
LIMA1-206ENST00000550611 KIF13AQ9H1H9 1805 aa6.66□□□□□ -1.34
LIMA1-206ENST00000550611 DISP3Q9P2K9 1392 aa6.66□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms