RNA–Protein interactions for RNA: ENST00000549547.1

PRPF40B-210, Transcript of pre-mRNA processing factor 40 homolog B, humanhuman

TSL 5

Gene PRPF40B, Length 697 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40B-210ENST00000549547 DBF4Q9UBU7 674 aaPredicted RBP16.81■□□□□ 0.28
PRPF40B-210ENST00000549547 KIAA1551Q9HCM1 1747 aa16.81■□□□□ 0.28
PRPF40B-210ENST00000549547 N4BP2Q86UW6 1770 aaPredicted RBP16.8■□□□□ 0.28
PRPF40B-210ENST00000549547 PDIA6Q15084 440 aa16.8■□□□□ 0.28
PRPF40B-210ENST00000549547 GPR162Q16538 588 aa16.8■□□□□ 0.28
PRPF40B-210ENST00000549547 NECTIN2Q92692 538 aa16.8■□□□□ 0.28
PRPF40B-210ENST00000549547 PXDNLA1KZ92 1463 aa16.8■□□□□ 0.28
PRPF40B-210ENST00000549547 PELP1Q8IZL8 1130 aaKnown RBP16.79■□□□□ 0.28
PRPF40B-210ENST00000549547 MYH16Q9H6N6 1097 aa16.79■□□□□ 0.28
PRPF40B-210ENST00000549547 NPHP1O15259 732 aa16.78■□□□□ 0.28
PRPF40B-210ENST00000549547 TTLL7Q6ZT98 887 aa16.78■□□□□ 0.28
PRPF40B-210ENST00000549547 LRP10Q7Z4F1 713 aa16.78■□□□□ 0.28
PRPF40B-210ENST00000549547 TSR2Q969E8 191 aaKnown RBP16.78■□□□□ 0.28
PRPF40B-210ENST00000549547 HYPKQ9NX55 129 aa16.78■□□□□ 0.28
PRPF40B-210ENST00000549547 CHPF2Q9P2E5 772 aa16.78■□□□□ 0.28
PRPF40B-210ENST00000549547 NIP7Q9Y221 180 aaKnown RBP eCLIP16.78■□□□□ 0.28
PRPF40B-210ENST00000549547 ANKRD36CQ5JPF3 1778 aa16.78■□□□□ 0.28
PRPF40B-210ENST00000549547 ATP10DQ9P241 1426 aa16.78■□□□□ 0.28
PRPF40B-210ENST00000549547 BRCA1P38398 1863 aaKnown RBP16.78■□□□□ 0.28
PRPF40B-210ENST00000549547 GRIN3BO60391 1043 aa16.77■□□□□ 0.28
PRPF40B-210ENST00000549547 ST5P78524 1137 aa16.77■□□□□ 0.28
PRPF40B-210ENST00000549547 GOLGA2Q08379 1002 aa16.77■□□□□ 0.28
PRPF40B-210ENST00000549547 PROSER3Q2NL68 480 aa16.77■□□□□ 0.28
PRPF40B-210ENST00000549547 CCDC30Q5VVM6 783 aa16.77■□□□□ 0.28
PRPF40B-210ENST00000549547 MIER1Q8N108 512 aa16.77■□□□□ 0.28
PRPF40B-210ENST00000549547 CNBD1Q8NA66 436 aa16.77■□□□□ 0.28
PRPF40B-210ENST00000549547 C8orf58Q8NAV2 365 aa16.77■□□□□ 0.28
PRPF40B-210ENST00000549547 ZBTB3Q9H5J0 574 aa16.77■□□□□ 0.28
PRPF40B-210ENST00000549547 PDZRN3Q9UPQ7 1066 aa16.77■□□□□ 0.28
PRPF40B-210ENST00000549547 DLEC1Q9Y238 1755 aa16.77■□□□□ 0.27
PRPF40B-210ENST00000549547 FANCIQ9NVI1 1328 aa16.76■□□□□ 0.27
PRPF40B-210ENST00000549547 ELL2O00472 640 aaPredicted RBP16.76■□□□□ 0.27
PRPF40B-210ENST00000549547 HLFQ16534 295 aa16.76■□□□□ 0.27
PRPF40B-210ENST00000549547 HSP90AB3PQ58FF7 597 aa16.76■□□□□ 0.27
PRPF40B-210ENST00000549547 GIGYF2Q6Y7W6 1299 aaKnown RBP16.76■□□□□ 0.27
PRPF40B-210ENST00000549547 NBPF5PQ86XG9 351 aaPredicted RBP16.76■□□□□ 0.27
PRPF40B-210ENST00000549547 CHD4Q14839 1912 aa16.76■□□□□ 0.27
PRPF40B-210ENST00000549547 CACNA1FO60840 1977 aa16.75■□□□□ 0.27
PRPF40B-210ENST00000549547 ANXA1P04083 346 aa16.75■□□□□ 0.27
PRPF40B-210ENST00000549547 TWISTNBQ3B726 338 aaPredicted RBP16.75■□□□□ 0.27
PRPF40B-210ENST00000549547 PRR5LQ6MZQ0 368 aa16.75■□□□□ 0.27
PRPF40B-210ENST00000549547 TPTE2Q6XPS3 522 aa16.75■□□□□ 0.27
PRPF40B-210ENST00000549547 COPS6Q7L5N1 327 aa16.75■□□□□ 0.27
PRPF40B-210ENST00000549547 XAGE3Q8WTP9 111 aa16.75■□□□□ 0.27
PRPF40B-210ENST00000549547 NYXQ9GZU5 481 aa16.75■□□□□ 0.27
PRPF40B-210ENST00000549547 ANKRD31Q8N7Z5 1873 aa16.75■□□□□ 0.27
PRPF40B-210ENST00000549547 ZNF521Q96K83 1311 aa16.74■□□□□ 0.27
PRPF40B-210ENST00000549547 GOLGB1Q14789 3259 aaKnown RBP16.74■□□□□ 0.27
PRPF40B-210ENST00000549547 A0A0G2JLW4 131 aa16.74■□□□□ 0.27
PRPF40B-210ENST00000549547 DPEP1P16444 411 aa16.74■□□□□ 0.27
PRPF40B-210ENST00000549547 PDE6BP35913 854 aa16.74■□□□□ 0.27
PRPF40B-210ENST00000549547 AIMP1Q12904 312 aaKnown RBP16.74■□□□□ 0.27
PRPF40B-210ENST00000549547 BRIP1Q9BX63 1249 aa16.74■□□□□ 0.27
PRPF40B-210ENST00000549547 STK31Q9BXU1 1019 aa16.74■□□□□ 0.27
PRPF40B-210ENST00000549547 IBTKQ9P2D0 1353 aaPredicted RBP16.74■□□□□ 0.27
PRPF40B-210ENST00000549547 ARFGEF1Q9Y6D6 1849 aa16.73■□□□□ 0.27
PRPF40B-210ENST00000549547 PARP10Q53GL7 1025 aa16.73■□□□□ 0.27
PRPF40B-210ENST00000549547 PIM2Q9P1W9 311 aa16.73■□□□□ 0.27
PRPF40B-210ENST00000549547 ARFGEF2Q9Y6D5 1785 aa16.72■□□□□ 0.27
PRPF40B-210ENST00000549547 H0YIN7 160 aa16.72■□□□□ 0.27
PRPF40B-210ENST00000549547 GTF2E1P29083 439 aaPredicted RBP16.72■□□□□ 0.27
PRPF40B-210ENST00000549547 PLBD2Q8NHP8 589 aa16.72■□□□□ 0.27
PRPF40B-210ENST00000549547 UTRNP46939 3433 aa16.71■□□□□ 0.27
PRPF40B-210ENST00000549547 E9PSI1 815 aa16.71■□□□□ 0.27
PRPF40B-210ENST00000549547 YBX3P16989 372 aaKnown RBP eCLIP16.71■□□□□ 0.27
PRPF40B-210ENST00000549547 ANKRD13DQ6ZTN6 518 aa16.71■□□□□ 0.27
PRPF40B-210ENST00000549547 PPP1R42Q7Z4L9 355 aa16.71■□□□□ 0.27
PRPF40B-210ENST00000549547 C2CD5Q86YS7 1000 aa16.71■□□□□ 0.27
PRPF40B-210ENST00000549547 ZNF34Q8IZ26 560 aa16.71■□□□□ 0.27
PRPF40B-210ENST00000549547 TSPYL6Q8N831 410 aa16.71■□□□□ 0.27
PRPF40B-210ENST00000549547 RNF123Q5XPI4 1314 aa16.7■□□□□ 0.26
PRPF40B-210ENST00000549547 DDX58O95786 925 aaKnown RBP16.7■□□□□ 0.26
PRPF40B-210ENST00000549547 GPTP24298 496 aa16.7■□□□□ 0.26
PRPF40B-210ENST00000549547 CHRNA5P30532 468 aa16.7■□□□□ 0.26
PRPF40B-210ENST00000549547 EXOSC9Q06265 439 aaKnown RBP16.7■□□□□ 0.26
PRPF40B-210ENST00000549547 DALRD3Q5D0E6 543 aaKnown RBP16.7■□□□□ 0.26
PRPF40B-210ENST00000549547 COL11A2P13942 1736 aaPredicted RBP16.7■□□□□ 0.26
PRPF40B-210ENST00000549547 FAM177BA6PVY3 158 aa16.69■□□□□ 0.26
PRPF40B-210ENST00000549547 KCNA3P22001 575 aa16.69■□□□□ 0.26
PRPF40B-210ENST00000549547 SPINK5Q9NQ38 1064 aaPredicted RBP16.69■□□□□ 0.26
PRPF40B-210ENST00000549547 BCS1LQ9Y276 419 aa16.69■□□□□ 0.26
PRPF40B-210ENST00000549547 UBN2Q6ZU65 1347 aa16.69■□□□□ 0.26
PRPF40B-210ENST00000549547 TCIRG1Q13488 830 aa16.68■□□□□ 0.26
PRPF40B-210ENST00000549547 WWC3Q9ULE0 1092 aa16.68■□□□□ 0.26
PRPF40B-210ENST00000549547 RIC1Q4ADV7 1423 aa16.68■□□□□ 0.26
PRPF40B-210ENST00000549547 VAMP4O75379 141 aa16.67■□□□□ 0.26
PRPF40B-210ENST00000549547 RIC3Q7Z5B4 369 aa16.67■□□□□ 0.26
PRPF40B-210ENST00000549547 CCDC24Q8N4L8 307 aa16.67■□□□□ 0.26
PRPF40B-210ENST00000549547 PHAXQ9H814 394 aaKnown RBP16.67■□□□□ 0.26
PRPF40B-210ENST00000549547 NTSR2O95665 410 aa16.66■□□□□ 0.26
PRPF40B-210ENST00000549547 SUSD4Q5VX71 490 aa16.66■□□□□ 0.26
PRPF40B-210ENST00000549547 STYK1Q6J9G0 422 aa16.66■□□□□ 0.26
PRPF40B-210ENST00000549547 NLRP10Q86W26 655 aa16.66■□□□□ 0.26
PRPF40B-210ENST00000549547 TTLL6Q8N841 843 aa16.66■□□□□ 0.26
PRPF40B-210ENST00000549547 UTP14AQ9BVJ6 771 aaKnown RBP16.66■□□□□ 0.26
PRPF40B-210ENST00000549547 CACNA1SQ13698 1873 aa16.65■□□□□ 0.26
PRPF40B-210ENST00000549547 SLC4A2P04920 1241 aa16.65■□□□□ 0.26
PRPF40B-210ENST00000549547 SLFN5Q08AF3 891 aa16.65■□□□□ 0.26
PRPF40B-210ENST00000549547 CNKSR1Q969H4 720 aa16.65■□□□□ 0.26
PRPF40B-210ENST00000549547 ZNF622Q969S3 477 aaKnown RBP eCLIP16.65■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 49 ms