RNA–Protein interactions for RNA: ENST00000544504.5

YBX3-215, Transcript of Y-box binding protein 3, human

TSL 3

Gene YBX3, Length 583 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
YBX3-215	ENST00000544504	ELL2	O00472	640 aa	Predicted RBP	12.15	□□□□□ -0.46
YBX3-215	ENST00000544504	CANX	P27824	592 aa	Known RBP	12.15	□□□□□ -0.46
YBX3-215	ENST00000544504	RRP1	P56182	461 aa	Known RBP	12.15	□□□□□ -0.46
YBX3-215	ENST00000544504	TRAPPC3L	Q5T215	181 aa		12.15	□□□□□ -0.46
YBX3-215	ENST00000544504	TSPYL6	Q8N831	410 aa		12.15	□□□□□ -0.46
YBX3-215	ENST00000544504	RNF181	Q9P0P0	153 aa		12.15	□□□□□ -0.46
YBX3-215	ENST00000544504	PIM2	Q9P1W9	311 aa		12.15	□□□□□ -0.46
YBX3-215	ENST00000544504	KCNA3	P22001	575 aa		12.14	□□□□□ -0.47
YBX3-215	ENST00000544504	ATP6V1A	P38606	617 aa		12.14	□□□□□ -0.47
YBX3-215	ENST00000544504	SLC39A6	Q13433	755 aa		12.14	□□□□□ -0.47
YBX3-215	ENST00000544504	ITPK1	Q13572	414 aa		12.14	□□□□□ -0.47
YBX3-215	ENST00000544504	HDGFL1	Q5TGJ6	251 aa		12.14	□□□□□ -0.47
YBX3-215	ENST00000544504	SSH1	Q8WYL5	1049 aa		12.14	□□□□□ -0.47
YBX3-215	ENST00000544504	RTCB	Q9Y3I0	505 aa	Known RBP	12.14	□□□□□ -0.47
YBX3-215	ENST00000544504	UBR2	Q8IWV8	1755 aa		12.14	□□□□□ -0.47
YBX3-215	ENST00000544504	ERBB4	Q15303	1308 aa		12.13	□□□□□ -0.47
YBX3-215	ENST00000544504	ZC3H4	Q9UPT8	1303 aa	Known RBP	12.13	□□□□□ -0.47
YBX3-215	ENST00000544504	N4BP2	Q86UW6	1770 aa	Predicted RBP	12.13	□□□□□ -0.47
YBX3-215	ENST00000544504	CACNA1F	O60840	1977 aa		12.13	□□□□□ -0.47
YBX3-215	ENST00000544504	KCNQ3	O43525	872 aa		12.13	□□□□□ -0.47
YBX3-215	ENST00000544504	ADRA2B	P18089	450 aa		12.13	□□□□□ -0.47
YBX3-215	ENST00000544504	DALRD3	Q5D0E6	543 aa	Known RBP	12.13	□□□□□ -0.47
YBX3-215	ENST00000544504	ARHGAP45	Q92619	1136 aa		12.13	□□□□□ -0.47
YBX3-215	ENST00000544504	ZNF496	Q96IT1	587 aa	Predicted RBP	12.13	□□□□□ -0.47
YBX3-215	ENST00000544504	PARP3	Q9Y6F1	533 aa		12.13	□□□□□ -0.47
YBX3-215	ENST00000544504	TNRC6C	Q9HCJ0	1690 aa	Known RBP	12.13	□□□□□ -0.47
YBX3-215	ENST00000544504	BCAR3	O75815	825 aa		12.12	□□□□□ -0.47
YBX3-215	ENST00000544504	PDE3A	Q14432	1141 aa		12.12	□□□□□ -0.47
YBX3-215	ENST00000544504	KRT24	Q2M2I5	525 aa		12.12	□□□□□ -0.47
YBX3-215	ENST00000544504	ERICH6B	Q5W0A0	696 aa		12.12	□□□□□ -0.47
YBX3-215	ENST00000544504	ZKSCAN2	Q63HK3	967 aa		12.12	□□□□□ -0.47
YBX3-215	ENST00000544504	ATG3	Q9NT62	314 aa		12.12	□□□□□ -0.47
YBX3-215	ENST00000544504	DBF4	Q9UBU7	674 aa	Predicted RBP	12.12	□□□□□ -0.47
YBX3-215	ENST00000544504	ASAP1	Q9ULH1	1129 aa		12.12	□□□□□ -0.47
YBX3-215	ENST00000544504	PTPRC	P08575	1304 aa		12.11	□□□□□ -0.47
YBX3-215	ENST00000544504	STARD3NL	O95772	234 aa		12.11	□□□□□ -0.47
YBX3-215	ENST00000544504	GYS1	P13807	737 aa		12.11	□□□□□ -0.47
YBX3-215	ENST00000544504	VEGFA	P15692	232 aa	Predicted RBP	12.11	□□□□□ -0.47
YBX3-215	ENST00000544504	MRPL50	Q8N5N7	158 aa	Known RBP	12.11	□□□□□ -0.47
YBX3-215	ENST00000544504	API5	Q9BZZ5	524 aa	Known RBP	12.11	□□□□□ -0.47
YBX3-215	ENST00000544504	C4A	P0C0L4	1744 aa		12.11	□□□□□ -0.47
YBX3-215	ENST00000544504	PTCD1	O75127	700 aa	Known RBP	12.1	□□□□□ -0.47
YBX3-215	ENST00000544504	SLC4A2	P04920	1241 aa		12.1	□□□□□ -0.47
YBX3-215	ENST00000544504	EIF2S2	P20042	333 aa	Known RBP	12.1	□□□□□ -0.47
YBX3-215	ENST00000544504	RFC4	P35249	363 aa		12.1	□□□□□ -0.47
YBX3-215	ENST00000544504	FRAT1	Q92837	279 aa	Predicted RBP	12.1	□□□□□ -0.47
YBX3-215	ENST00000544504	ARHGEF1	Q92888	912 aa	Known RBP	12.1	□□□□□ -0.47
YBX3-215	ENST00000544504	RBM42	Q9BTD8	480 aa	Known RBP	12.1	□□□□□ -0.47
YBX3-215	ENST00000544504	BCL2L13	Q9BXK5	485 aa		12.1	□□□□□ -0.47
YBX3-215	ENST00000544504	HYPK	Q9NX55	129 aa		12.1	□□□□□ -0.47
YBX3-215	ENST00000544504	LAMB4	A4D0S4	1761 aa		12.1	□□□□□ -0.47
YBX3-215	ENST00000544504	RC3H1	Q5TC82	1133 aa	Known RBP	12.09	□□□□□ -0.47
YBX3-215	ENST00000544504	ATF7IP	Q6VMQ6	1270 aa		12.09	□□□□□ -0.47
YBX3-215	ENST00000544504	DDX21	Q9NR30	783 aa	Known RBP eCLIP	12.09	□□□□□ -0.47
YBX3-215	ENST00000544504	ZNF831	Q5JPB2	1677 aa		12.09	□□□□□ -0.47
YBX3-215	ENST00000544504	BRCA1	P38398	1863 aa	Known RBP	12.08	□□□□□ -0.48
YBX3-215	ENST00000544504	GLTPD2	A6NH11	291 aa		12.08	□□□□□ -0.48
YBX3-215	ENST00000544504	FTSJ3	Q8IY81	847 aa	Known RBP	12.08	□□□□□ -0.48
YBX3-215	ENST00000544504	CHMP4B	Q9H444	224 aa	Known RBP	12.08	□□□□□ -0.48
YBX3-215	ENST00000544504	PCDH10	Q9P2E7	1040 aa		12.08	□□□□□ -0.48
YBX3-215	ENST00000544504	NOB1	Q9ULX3	412 aa	Known RBP	12.08	□□□□□ -0.48
YBX3-215	ENST00000544504	ARFGEF1	Q9Y6D6	1849 aa		12.08	□□□□□ -0.48
YBX3-215	ENST00000544504	DDX58	O95786	925 aa	Known RBP	12.07	□□□□□ -0.48
YBX3-215	ENST00000544504	AAMP	Q13685	434 aa		12.07	□□□□□ -0.48
YBX3-215	ENST00000544504	DZIP1L	Q8IYY4	767 aa	Known RBP	12.07	□□□□□ -0.48
YBX3-215	ENST00000544504	CHPF2	Q9P2E5	772 aa		12.07	□□□□□ -0.48
YBX3-215	ENST00000544504	CNTNAP4	Q9C0A0	1308 aa		12.07	□□□□□ -0.48
YBX3-215	ENST00000544504	RPS6KA4	O75676	772 aa		12.06	□□□□□ -0.48
YBX3-215	ENST00000544504	LMNB1	P20700	586 aa		12.06	□□□□□ -0.48
YBX3-215	ENST00000544504	FLII	Q13045	1269 aa		12.06	□□□□□ -0.48
YBX3-215	ENST00000544504	NPM2	Q86SE8	214 aa	Known RBP	12.06	□□□□□ -0.48
YBX3-215	ENST00000544504	NECTIN2	Q92692	538 aa		12.06	□□□□□ -0.48
YBX3-215	ENST00000544504	PRDM10	Q9NQV6	1147 aa		12.06	□□□□□ -0.48
YBX3-215	ENST00000544504	USP16	Q9Y5T5	823 aa		12.06	□□□□□ -0.48
YBX3-215	ENST00000544504	TCERG1	O14776	1098 aa	Known RBP	12.05	□□□□□ -0.48
YBX3-215	ENST00000544504	PLIN1	O60240	522 aa		12.05	□□□□□ -0.48
YBX3-215	ENST00000544504	TRIM27	P14373	513 aa		12.05	□□□□□ -0.48
YBX3-215	ENST00000544504	FKBP5	Q13451	457 aa	Predicted RBP	12.05	□□□□□ -0.48
YBX3-215	ENST00000544504	CREBZF	Q9NS37	354 aa		12.05	□□□□□ -0.48
YBX3-215	ENST00000544504	PRAMEF22	A3QJZ6	481 aa		12.04	□□□□□ -0.48
YBX3-215	ENST00000544504	CHRNA5	P30532	468 aa		12.04	□□□□□ -0.48
YBX3-215	ENST00000544504	FKBP8	Q14318	412 aa		12.04	□□□□□ -0.48
YBX3-215	ENST00000544504	DNAJC10	Q8IXB1	793 aa		12.04	□□□□□ -0.48
YBX3-215	ENST00000544504	SLC4A9	Q96Q91	983 aa		12.04	□□□□□ -0.48
YBX3-215	ENST00000544504	FOXN1	O15353	648 aa		12.03	□□□□□ -0.48
YBX3-215	ENST00000544504	CYP19A1	P11511	503 aa	Predicted RBP	12.03	□□□□□ -0.48
YBX3-215	ENST00000544504	CCT4	P50991	539 aa	Known RBP	12.03	□□□□□ -0.48
YBX3-215	ENST00000544504	RASSF7	Q02833	373 aa		12.03	□□□□□ -0.48
YBX3-215	ENST00000544504	DDR1	Q08345	913 aa		12.03	□□□□□ -0.48
YBX3-215	ENST00000544504	PDIA6	Q15084	440 aa		12.03	□□□□□ -0.48
YBX3-215	ENST00000544504	MKRN1	Q9UHC7	482 aa	Known RBP	12.03	□□□□□ -0.48
YBX3-215	ENST00000544504	DDX19B	Q9UMR2	479 aa		12.03	□□□□□ -0.48
YBX3-215	ENST00000544504	ABCC4	O15439	1325 aa		12.03	□□□□□ -0.48
YBX3-215	ENST00000544504	MYL6B	P14649	208 aa		12.02	□□□□□ -0.49
YBX3-215	ENST00000544504	IL6ST	P40189	918 aa	Predicted RBP	12.02	□□□□□ -0.49
YBX3-215	ENST00000544504	CTCF	P49711	727 aa	Predicted RBP	12.02	□□□□□ -0.49
YBX3-215	ENST00000544504	MVP	Q14764	893 aa	Known RBP	12.02	□□□□□ -0.49
YBX3-215	ENST00000544504	GTF3C3	Q9Y5Q9	886 aa		12.02	□□□□□ -0.49
YBX3-215	ENST00000544504	USP42	Q9H9J4	1324 aa	Known RBP	12.02	□□□□□ -0.49
YBX3-215	ENST00000544504	TJP1	Q07157	1748 aa		12.02	□□□□□ -0.49

Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms