RNA–Protein interactions for RNA: ENST00000542717.1

CHD4-209, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

TSL 3

Gene CHD4, Length 204 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-209ENST00000542717 FKBP4Q02790 459 aaKnown RBP eCLIP4.74□□□□□ -1.65
CHD4-209ENST00000542717 NBPF6Q5VWK0 638 aa4.74□□□□□ -1.65
CHD4-209ENST00000542717 PRPF40BQ6NWY9 871 aaKnown RBP4.74□□□□□ -1.65
CHD4-209ENST00000542717 CDC37L1Q7L3B6 337 aa4.74□□□□□ -1.65
CHD4-209ENST00000542717 C2orf69Q8N8R5 385 aa4.74□□□□□ -1.65
CHD4-209ENST00000542717 NBPF4Q96M43 638 aa4.74□□□□□ -1.65
CHD4-209ENST00000542717 CSRNP1Q96S65 589 aa4.74□□□□□ -1.65
CHD4-209ENST00000542717 MPHOSPH9Q99550 1183 aa4.74□□□□□ -1.65
CHD4-209ENST00000542717 INSRP06213 1382 aa4.74□□□□□ -1.65
CHD4-209ENST00000542717 CEP290O15078 2479 aa4.73□□□□□ -1.65
CHD4-209ENST00000542717 DLEC1Q9Y238 1755 aa4.73□□□□□ -1.65
CHD4-209ENST00000542717 FZD9O00144 591 aa4.73□□□□□ -1.65
CHD4-209ENST00000542717 GPR25O00155 361 aa4.73□□□□□ -1.65
CHD4-209ENST00000542717 SOX1O00570 391 aaPredicted RBP4.73□□□□□ -1.65
CHD4-209ENST00000542717 FKTNO75072 461 aa4.73□□□□□ -1.65
CHD4-209ENST00000542717 HOXC9P31274 260 aa4.73□□□□□ -1.65
CHD4-209ENST00000542717 SCNN1DP51172 638 aa4.73□□□□□ -1.65
CHD4-209ENST00000542717 SLC4A8Q2Y0W8 1093 aa4.73□□□□□ -1.65
CHD4-209ENST00000542717 Q7L0L9 218 aa4.73□□□□□ -1.65
CHD4-209ENST00000542717 REM2Q8IYK8 340 aaPredicted RBP4.73□□□□□ -1.65
CHD4-209ENST00000542717 SLC4A9Q96Q91 983 aa4.73□□□□□ -1.65
CHD4-209ENST00000542717 GBA2Q9HCG7 927 aaPredicted RBP4.73□□□□□ -1.65
CHD4-209ENST00000542717 ADARB2Q9NS39 739 aaKnown RBP4.73□□□□□ -1.65
CHD4-209ENST00000542717 SPG7Q9UQ90 795 aa4.73□□□□□ -1.65
CHD4-209ENST00000542717 TRIM17Q9Y577 477 aa4.73□□□□□ -1.65
CHD4-209ENST00000542717 CARMIL3Q8ND23 1372 aa4.73□□□□□ -1.65
CHD4-209ENST00000542717 MAP3K19Q56UN5 1328 aa4.72□□□□□ -1.65
CHD4-209ENST00000542717 EVC2Q86UK5 1308 aa4.72□□□□□ -1.65
CHD4-209ENST00000542717 PTCD1O75127 700 aaKnown RBP4.72□□□□□ -1.65
CHD4-209ENST00000542717 USP48Q86UV5 1035 aa4.72□□□□□ -1.65
CHD4-209ENST00000542717 RTKN2Q8IZC4 609 aa4.72□□□□□ -1.65
CHD4-209ENST00000542717 BRIP1Q9BX63 1249 aa4.72□□□□□ -1.65
CHD4-209ENST00000542717 RGPD2P0DJD1 1756 aa4.72□□□□□ -1.65
CHD4-209ENST00000542717 PAPPA2Q9BXP8 1791 aa4.72□□□□□ -1.65
CHD4-209ENST00000542717 SCN11AQ9UI33 1791 aa4.72□□□□□ -1.65
CHD4-209ENST00000542717 AFDNP55196 1824 aaKnown RBP4.72□□□□□ -1.65
CHD4-209ENST00000542717 ERBB4Q15303 1308 aa4.72□□□□□ -1.65
CHD4-209ENST00000542717 KDRP35968 1356 aa4.71□□□□□ -1.66
CHD4-209ENST00000542717 MYCP01106 439 aaPredicted RBP4.71□□□□□ -1.66
CHD4-209ENST00000542717 SLC10A3P09131 477 aa4.71□□□□□ -1.66
CHD4-209ENST00000542717 NKX1-1Q15270 411 aaPredicted RBP4.71□□□□□ -1.66
CHD4-209ENST00000542717 STYK1Q6J9G0 422 aa4.71□□□□□ -1.66
CHD4-209ENST00000542717 SYMPKQ92797 1274 aaKnown RBP4.71□□□□□ -1.66
CHD4-209ENST00000542717 MASTLQ96GX5 879 aa4.71□□□□□ -1.66
CHD4-209ENST00000542717 NR2E3Q9Y5X4 410 aa4.71□□□□□ -1.66
CHD4-209ENST00000542717 SLX4Q8IY92 1834 aa4.7□□□□□ -1.66
CHD4-209ENST00000542717 A0A1W2PPC1 479 aa4.7□□□□□ -1.66
CHD4-209ENST00000542717 LOC105371045A0A1W2PR82 267 aa4.7□□□□□ -1.66
CHD4-209ENST00000542717 FBLN1P23142 703 aa4.7□□□□□ -1.66
CHD4-209ENST00000542717 ST5P78524 1137 aa4.7□□□□□ -1.66
CHD4-209ENST00000542717 MAP3K12Q12852 859 aa4.7□□□□□ -1.66
CHD4-209ENST00000542717 DLK2Q6UY11 383 aa4.7□□□□□ -1.66
CHD4-209ENST00000542717 HDGFL2Q7Z4V5 671 aaPredicted RBP4.7□□□□□ -1.66
CHD4-209ENST00000542717 IFNL2Q8IZJ0 200 aa4.7□□□□□ -1.66
CHD4-209ENST00000542717 LARGE2Q8N3Y3 721 aa4.7□□□□□ -1.66
CHD4-209ENST00000542717 TMC1Q8TDI8 760 aa4.7□□□□□ -1.66
CHD4-209ENST00000542717 BCL2L13Q9BXK5 485 aa4.7□□□□□ -1.66
CHD4-209ENST00000542717 MTMR10Q9NXD2 777 aa4.7□□□□□ -1.66
CHD4-209ENST00000542717 GPRC5DQ9NZD1 345 aa4.7□□□□□ -1.66
CHD4-209ENST00000542717 NARFQ9UHQ1 456 aa4.7□□□□□ -1.66
CHD4-209ENST00000542717 MYH14Q7Z406 1995 aaKnown RBP4.7□□□□□ -1.66
CHD4-209ENST00000542717 CACNA1SQ13698 1873 aa4.7□□□□□ -1.66
CHD4-209ENST00000542717 UNC80Q8N2C7 3258 aa4.69□□□□□ -1.66
CHD4-209ENST00000542717 PPEF1O14829 653 aaPredicted RBP4.69□□□□□ -1.66
CHD4-209ENST00000542717 SRGNP10124 158 aa4.69□□□□□ -1.66
CHD4-209ENST00000542717 CABP4P57796 275 aa4.69□□□□□ -1.66
CHD4-209ENST00000542717 PRR5LQ6MZQ0 368 aa4.69□□□□□ -1.66
CHD4-209ENST00000542717 GPR153Q6NV75 609 aa4.69□□□□□ -1.66
CHD4-209ENST00000542717 OLFM4Q6UX06 510 aa4.69□□□□□ -1.66
CHD4-209ENST00000542717 OTOP1Q7RTM1 612 aa4.69□□□□□ -1.66
CHD4-209ENST00000542717 NBPF11Q86T75 865 aa4.69□□□□□ -1.66
CHD4-209ENST00000542717 NIM1KQ8IY84 436 aa4.69□□□□□ -1.66
CHD4-209ENST00000542717 CNBD1Q8NA66 436 aa4.69□□□□□ -1.66
CHD4-209ENST00000542717 ZC3H15Q8WU90 426 aaKnown RBP4.69□□□□□ -1.66
CHD4-209ENST00000542717 COG3Q96JB2 828 aa4.69□□□□□ -1.66
CHD4-209ENST00000542717 STAC3Q96MF2 364 aa4.69□□□□□ -1.66
CHD4-209ENST00000542717 HTATIP2Q9BUP3 242 aa4.69□□□□□ -1.66
CHD4-209ENST00000542717 WASHC2AQ641Q2 1341 aa4.69□□□□□ -1.66
CHD4-209ENST00000542717 RPTORQ8N122 1335 aa4.69□□□□□ -1.66
CHD4-209ENST00000542717 WTIPA6NIX2 430 aaPredicted RBP4.68□□□□□ -1.66
CHD4-209ENST00000542717 TNFRSF10AO00220 468 aa4.68□□□□□ -1.66
CHD4-209ENST00000542717 RRS1Q15050 365 aaKnown RBP4.68□□□□□ -1.66
CHD4-209ENST00000542717 NOM1Q5C9Z4 860 aaKnown RBP4.68□□□□□ -1.66
CHD4-209ENST00000542717 INTS5Q6P9B9 1019 aaKnown RBP4.68□□□□□ -1.66
CHD4-209ENST00000542717 KRT26Q7Z3Y9 468 aa4.68□□□□□ -1.66
CHD4-209ENST00000542717 ARMC5Q96C12 935 aa4.68□□□□□ -1.66
CHD4-209ENST00000542717 PTPN22Q9Y2R2 807 aa4.68□□□□□ -1.66
CHD4-209ENST00000542717 COL5A3P25940 1745 aaPredicted RBP4.68□□□□□ -1.66
CHD4-209ENST00000542717 MON2Q7Z3U7 1717 aa4.68□□□□□ -1.66
CHD4-209ENST00000542717 CACNA1AO00555 2505 aa4.68□□□□□ -1.66
CHD4-209ENST00000542717 COL15A1P39059 1388 aa4.67□□□□□ -1.66
CHD4-209ENST00000542717 NRXN2Q9P2S2 1712 aa4.67□□□□□ -1.66
CHD4-209ENST00000542717 ERVV-2B6SEH9 535 aa4.67□□□□□ -1.66
CHD4-209ENST00000542717 H7C1D1 291 aa4.67□□□□□ -1.66
CHD4-209ENST00000542717 PHKG2P15735 406 aa4.67□□□□□ -1.66
CHD4-209ENST00000542717 GMPSP49915 693 aaPredicted RBP4.67□□□□□ -1.66
CHD4-209ENST00000542717 MKRN3Q13064 507 aaKnown RBP4.67□□□□□ -1.66
CHD4-209ENST00000542717 SLC9C1Q4G0N8 1177 aa4.67□□□□□ -1.66
CHD4-209ENST00000542717 TBC1D9BQ66K14 1250 aa4.67□□□□□ -1.66
CHD4-209ENST00000542717 ALYREFQ86V81 257 aaKnown RBP4.67□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms