RNA–Protein interactions for RNA: ENST00000539232.1

LMO3-220, Transcript of LIM domain only 3, humanhuman

TSL 5

Gene LMO3, Length 580 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMO3-220ENST00000539232 TM4SF1P30408 202 aa9.57□□□□□ -0.88
LMO3-220ENST00000539232 NFIXQ14938 502 aa9.57□□□□□ -0.88
LMO3-220ENST00000539232 FMNL2Q96PY5 1086 aa9.57□□□□□ -0.88
LMO3-220ENST00000539232 TBC1D2BQ9UPU7 963 aa9.57□□□□□ -0.88
LMO3-220ENST00000539232 ZNF330Q9Y3S2 320 aaPredicted RBP9.57□□□□□ -0.88
LMO3-220ENST00000539232 TMEM88BA6NKF7 163 aa9.56□□□□□ -0.88
LMO3-220ENST00000539232 LMNB1P20700 586 aa9.56□□□□□ -0.88
LMO3-220ENST00000539232 EIF4A1P60842 406 aaKnown RBP9.56□□□□□ -0.88
LMO3-220ENST00000539232 NLGN1Q8N2Q7 840 aa9.56□□□□□ -0.88
LMO3-220ENST00000539232 CCDC24Q8N4L8 307 aa9.56□□□□□ -0.88
LMO3-220ENST00000539232 GCC1Q96CN9 775 aa9.56□□□□□ -0.88
LMO3-220ENST00000539232 MCOLN1Q9GZU1 580 aa9.56□□□□□ -0.88
LMO3-220ENST00000539232 PASKQ96RG2 1323 aa9.56□□□□□ -0.88
LMO3-220ENST00000539232 MAPK8IP3Q9UPT6 1336 aa9.56□□□□□ -0.88
LMO3-220ENST00000539232 COL15A1P39059 1388 aa9.55□□□□□ -0.88
LMO3-220ENST00000539232 POLRMTO00411 1230 aaKnown RBP9.55□□□□□ -0.88
LMO3-220ENST00000539232 APAF1O14727 1248 aa9.55□□□□□ -0.88
LMO3-220ENST00000539232 CAMTA2O94983 1202 aa9.55□□□□□ -0.88
LMO3-220ENST00000539232 STARD3NLO95772 234 aa9.55□□□□□ -0.88
LMO3-220ENST00000539232 BICDL1Q6ZP65 573 aa9.55□□□□□ -0.88
LMO3-220ENST00000539232 BEGAINQ9BUH8 593 aa9.55□□□□□ -0.88
LMO3-220ENST00000539232 NARFQ9UHQ1 456 aa9.55□□□□□ -0.88
LMO3-220ENST00000539232 CCDC88AQ3V6T2 1871 aa9.55□□□□□ -0.88
LMO3-220ENST00000539232 C4AP0C0L4 1744 aa9.54□□□□□ -0.88
LMO3-220ENST00000539232 TJP1Q07157 1748 aa9.54□□□□□ -0.88
LMO3-220ENST00000539232 TIAM2Q8IVF5 1701 aa9.54□□□□□ -0.88
LMO3-220ENST00000539232 SNRPA1P09661 255 aaKnown RBP9.54□□□□□ -0.88
LMO3-220ENST00000539232 WDR43Q15061 677 aaKnown RBP eCLIP9.54□□□□□ -0.88
LMO3-220ENST00000539232 PROSER3Q2NL68 480 aa9.54□□□□□ -0.88
LMO3-220ENST00000539232 TBC1D9BQ66K14 1250 aa9.54□□□□□ -0.88
LMO3-220ENST00000539232 DPY19L2Q6NUT2 758 aa9.54□□□□□ -0.88
LMO3-220ENST00000539232 RUNDC1Q96C34 613 aa9.54□□□□□ -0.88
LMO3-220ENST00000539232 RASSF10A6NK89 507 aa9.53□□□□□ -0.88
LMO3-220ENST00000539232 ZPR1O75312 459 aa9.53□□□□□ -0.88
LMO3-220ENST00000539232 ANXA1P04083 346 aa9.53□□□□□ -0.88
LMO3-220ENST00000539232 CHRNA5P30532 468 aa9.53□□□□□ -0.88
LMO3-220ENST00000539232 DEFB115Q30KQ5 88 aa9.53□□□□□ -0.88
LMO3-220ENST00000539232 NGEFQ8N5V2 710 aa9.53□□□□□ -0.88
LMO3-220ENST00000539232 PNISRQ8TF01 805 aaKnown RBP9.53□□□□□ -0.88
LMO3-220ENST00000539232 WDR33Q9C0J8 1336 aaKnown RBP9.53□□□□□ -0.88
LMO3-220ENST00000539232 SCN11AQ9UI33 1791 aa9.52□□□□□ -0.88
LMO3-220ENST00000539232 CARMIL3Q8ND23 1372 aa9.52□□□□□ -0.88
LMO3-220ENST00000539232 MYH14Q7Z406 1995 aaKnown RBP9.52□□□□□ -0.89
LMO3-220ENST00000539232 CHL1O00533 1208 aa9.52□□□□□ -0.89
LMO3-220ENST00000539232 RASSF7Q02833 373 aa9.52□□□□□ -0.89
LMO3-220ENST00000539232 PDIA6Q15084 440 aa9.52□□□□□ -0.89
LMO3-220ENST00000539232 HLFQ16534 295 aa9.52□□□□□ -0.89
LMO3-220ENST00000539232 TTLL7Q6ZT98 887 aa9.52□□□□□ -0.89
LMO3-220ENST00000539232 LRP10Q7Z4F1 713 aa9.52□□□□□ -0.89
LMO3-220ENST00000539232 NECTIN2Q92692 538 aa9.52□□□□□ -0.89
LMO3-220ENST00000539232 TSPYL4Q9UJ04 414 aa9.52□□□□□ -0.89
LMO3-220ENST00000539232 LAS1LQ9Y4W2 734 aaKnown RBP9.52□□□□□ -0.89
LMO3-220ENST00000539232 PARP3Q9Y6F1 533 aa9.52□□□□□ -0.89
LMO3-220ENST00000539232 CASP8AP2Q9UKL3 1982 aa9.52□□□□□ -0.89
LMO3-220ENST00000539232 IL6STP40189 918 aaPredicted RBP9.51□□□□□ -0.89
LMO3-220ENST00000539232 TEX13AQ9BXU3 409 aaPredicted RBP9.51□□□□□ -0.89
LMO3-220ENST00000539232 THSD7BQ9C0I4 1608 aa9.5□□□□□ -0.89
LMO3-220ENST00000539232 SERPINB2P05120 415 aa9.5□□□□□ -0.89
LMO3-220ENST00000539232 NEFMP07197 916 aa9.5□□□□□ -0.89
LMO3-220ENST00000539232 POTEIP0CG38 1075 aa9.5□□□□□ -0.89
LMO3-220ENST00000539232 POTEJP0CG39 1038 aa9.5□□□□□ -0.89
LMO3-220ENST00000539232 MYL6BP14649 208 aa9.5□□□□□ -0.89
LMO3-220ENST00000539232 SLC51AQ86UW1 340 aa9.5□□□□□ -0.89
LMO3-220ENST00000539232 LDHDQ86WU2 507 aa9.5□□□□□ -0.89
LMO3-220ENST00000539232 DZIP3Q86Y13 1208 aaKnown RBP9.5□□□□□ -0.89
LMO3-220ENST00000539232 ZNF428Q96B54 188 aa9.5□□□□□ -0.89
LMO3-220ENST00000539232 PNNQ9H307 717 aaKnown RBP9.5□□□□□ -0.89
LMO3-220ENST00000539232 MRS2Q9HD23 443 aa9.5□□□□□ -0.89
LMO3-220ENST00000539232 COL5A3P25940 1745 aaPredicted RBP9.5□□□□□ -0.89
LMO3-220ENST00000539232 ZNF853P0CG23 659 aa9.49□□□□□ -0.89
LMO3-220ENST00000539232 EIF2S2P20042 333 aaKnown RBP9.49□□□□□ -0.89
LMO3-220ENST00000539232 DGKZQ13574 1117 aa9.49□□□□□ -0.89
LMO3-220ENST00000539232 MBIPQ9NS73 344 aa9.49□□□□□ -0.89
LMO3-220ENST00000539232 DICER1Q9UPY3 1922 aaKnown RBP9.48□□□□□ -0.89
LMO3-220ENST00000539232 ZNF831Q5JPB2 1677 aa9.48□□□□□ -0.89
LMO3-220ENST00000539232 A0A087WZG4 1122 aa9.48□□□□□ -0.89
LMO3-220ENST00000539232 FAM177BA6PVY3 158 aa9.48□□□□□ -0.89
LMO3-220ENST00000539232 DLL1O00548 723 aa9.48□□□□□ -0.89
LMO3-220ENST00000539232 ANP32CO43423 234 aa9.48□□□□□ -0.89
LMO3-220ENST00000539232 ITGBL1O95965 494 aaPredicted RBP9.48□□□□□ -0.89
LMO3-220ENST00000539232 HABP4Q5JVS0 413 aaKnown RBP9.48□□□□□ -0.89
LMO3-220ENST00000539232 PRR5LQ6MZQ0 368 aa9.48□□□□□ -0.89
LMO3-220ENST00000539232 ELL2O00472 640 aaPredicted RBP9.47□□□□□ -0.89
LMO3-220ENST00000539232 CA12O43570 354 aa9.47□□□□□ -0.89
LMO3-220ENST00000539232 SOX10P56693 466 aa9.47□□□□□ -0.89
LMO3-220ENST00000539232 TSPYL6Q8N831 410 aa9.47□□□□□ -0.89
LMO3-220ENST00000539232 C8orf58Q8NAV2 365 aa9.47□□□□□ -0.89
LMO3-220ENST00000539232 TSR2Q969E8 191 aaKnown RBP9.47□□□□□ -0.89
LMO3-220ENST00000539232 ZBTB3Q9H5J0 574 aa9.47□□□□□ -0.89
LMO3-220ENST00000539232 SPINK5Q9NQ38 1064 aaPredicted RBP9.47□□□□□ -0.89
LMO3-220ENST00000539232 SALL2Q9Y467 1007 aaPredicted RBP9.47□□□□□ -0.89
LMO3-220ENST00000539232 GTF3C3Q9Y5Q9 886 aa9.47□□□□□ -0.89
LMO3-220ENST00000539232 UBR2Q8IWV8 1755 aa9.47□□□□□ -0.89
LMO3-220ENST00000539232 CUL9Q8IWT3 2517 aa9.46□□□□□ -0.89
LMO3-220ENST00000539232 LTBP1Q14766 1721 aa9.46□□□□□ -0.89
LMO3-220ENST00000539232 SIPA1L3O60292 1781 aaPredicted RBP9.46□□□□□ -0.9
LMO3-220ENST00000539232 IQCA1LA6NCM1 817 aa9.46□□□□□ -0.9
LMO3-220ENST00000539232 GPTP24298 496 aa9.46□□□□□ -0.9
LMO3-220ENST00000539232 ECE1P42892 770 aa9.46□□□□□ -0.9
LMO3-220ENST00000539232 LMOD3Q0VAK6 560 aa9.46□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms