RNA–Protein interactions for RNA: ENST00000539080.1

CLIP1-211, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 4

Gene CLIP1, Length 560 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-211ENST00000539080 CFAP44Q96MT7 982 aa24.81■■□□□ 1.56
CLIP1-211ENST00000539080 ST5P78524 1137 aa24.8■■□□□ 1.56
CLIP1-211ENST00000539080 CALD1Q05682 793 aaKnown RBP24.8■■□□□ 1.56
CLIP1-211ENST00000539080 KIF6Q6ZMV9 814 aa24.8■■□□□ 1.56
CLIP1-211ENST00000539080 C2CD5Q86YS7 1000 aa24.8■■□□□ 1.56
CLIP1-211ENST00000539080 NPHP1O15259 732 aa24.79■■□□□ 1.56
CLIP1-211ENST00000539080 MYL6BP14649 208 aa24.79■■□□□ 1.56
CLIP1-211ENST00000539080 CCDC184Q52MB2 194 aa24.79■■□□□ 1.56
CLIP1-211ENST00000539080 ARHGAP27Q6ZUM4 889 aa24.79■■□□□ 1.56
CLIP1-211ENST00000539080 NIP7Q9Y221 180 aaKnown RBP eCLIP24.79■■□□□ 1.56
CLIP1-211ENST00000539080 LAS1LQ9Y4W2 734 aaKnown RBP24.79■■□□□ 1.56
CLIP1-211ENST00000539080 MAP3K15Q6ZN16 1313 aa24.79■■□□□ 1.56
CLIP1-211ENST00000539080 NBPF5PQ86XG9 351 aaPredicted RBP24.78■■□□□ 1.56
CLIP1-211ENST00000539080 NUP98P52948 1817 aa24.77■■□□□ 1.56
CLIP1-211ENST00000539080 HOXB7P09629 217 aa24.77■■□□□ 1.56
CLIP1-211ENST00000539080 EIF2S2P20042 333 aaKnown RBP24.77■■□□□ 1.56
CLIP1-211ENST00000539080 HLFQ16534 295 aa24.77■■□□□ 1.56
CLIP1-211ENST00000539080 NGEFQ8N5V2 710 aa24.77■■□□□ 1.56
CLIP1-211ENST00000539080 TTLL6Q8N841 843 aa24.77■■□□□ 1.56
CLIP1-211ENST00000539080 ATP10DQ9P241 1426 aa24.77■■□□□ 1.56
CLIP1-211ENST00000539080 PDIA6Q15084 440 aa24.76■■□□□ 1.55
CLIP1-211ENST00000539080 TPTE2Q6XPS3 522 aa24.76■■□□□ 1.55
CLIP1-211ENST00000539080 MRS2Q9HD23 443 aa24.76■■□□□ 1.55
CLIP1-211ENST00000539080 COL11A2P13942 1736 aaPredicted RBP24.75■■□□□ 1.55
CLIP1-211ENST00000539080 TTLL7Q6ZT98 887 aa24.75■■□□□ 1.55
CLIP1-211ENST00000539080 LRP10Q7Z4F1 713 aa24.75■■□□□ 1.55
CLIP1-211ENST00000539080 IFT57Q9NWB7 429 aa24.75■■□□□ 1.55
CLIP1-211ENST00000539080 ZNF853P0CG23 659 aa24.74■■□□□ 1.55
CLIP1-211ENST00000539080 GNAI1P63096 354 aa24.73■■□□□ 1.55
CLIP1-211ENST00000539080 GIGYF2Q6Y7W6 1299 aaKnown RBP24.72■■□□□ 1.55
CLIP1-211ENST00000539080 CCDC24Q8N4L8 307 aa24.72■■□□□ 1.55
CLIP1-211ENST00000539080 NYXQ9GZU5 481 aa24.72■■□□□ 1.55
CLIP1-211ENST00000539080 MBIPQ9NS73 344 aa24.72■■□□□ 1.55
CLIP1-211ENST00000539080 IBTKQ9P2D0 1353 aaPredicted RBP24.71■■□□□ 1.55
CLIP1-211ENST00000539080 CCDC27Q2M243 656 aa24.71■■□□□ 1.55
CLIP1-211ENST00000539080 KRT24Q2M2I5 525 aa24.71■■□□□ 1.55
CLIP1-211ENST00000539080 NCBP3Q53F19 620 aaKnown RBP24.71■■□□□ 1.55
CLIP1-211ENST00000539080 STYK1Q6J9G0 422 aa24.71■■□□□ 1.55
CLIP1-211ENST00000539080 ZNF622Q969S3 477 aaKnown RBP eCLIP24.71■■□□□ 1.551e-6■□□□□ 10.3
CLIP1-211ENST00000539080 ZBTB3Q9H5J0 574 aa24.71■■□□□ 1.55
CLIP1-211ENST00000539080 DDX21Q9NR30 783 aaKnown RBP eCLIP24.71■■□□□ 1.55
CLIP1-211ENST00000539080 SRGNP10124 158 aa24.7■■□□□ 1.54
CLIP1-211ENST00000539080 PROSER3Q2NL68 480 aa24.7■■□□□ 1.54
CLIP1-211ENST00000539080 ARFGEF2Q9Y6D5 1785 aa24.7■■□□□ 1.54
CLIP1-211ENST00000539080 KLRG2A4D1S0 409 aaPredicted RBP24.69■■□□□ 1.54
CLIP1-211ENST00000539080 HDGFL1Q5TGJ6 251 aa24.69■■□□□ 1.54
CLIP1-211ENST00000539080 CNKSR1Q969H4 720 aa24.69■■□□□ 1.54
CLIP1-211ENST00000539080 MASTLQ96GX5 879 aa24.69■■□□□ 1.54
CLIP1-211ENST00000539080 GTF2E1P29083 439 aaPredicted RBP24.68■■□□□ 1.54
CLIP1-211ENST00000539080 ZNF34Q8IZ26 560 aa24.68■■□□□ 1.54
CLIP1-211ENST00000539080 NECTIN2Q92692 538 aa24.68■■□□□ 1.54
CLIP1-211ENST00000539080 GPBP1L1Q9HC44 474 aaPredicted RBP24.68■■□□□ 1.54
CLIP1-211ENST00000539080 SBF1O95248 1867 aa24.67■■□□□ 1.54
CLIP1-211ENST00000539080 DUSP27Q5VZP5 1158 aa24.67■■□□□ 1.54
CLIP1-211ENST00000539080 FAM177BA6PVY3 158 aa24.66■■□□□ 1.54
CLIP1-211ENST00000539080 ANXA1P04083 346 aa24.66■■□□□ 1.54
CLIP1-211ENST00000539080 PARP10Q53GL7 1025 aa24.66■■□□□ 1.54
CLIP1-211ENST00000539080 C9orf131Q5VYM1 1079 aa24.66■■□□□ 1.54
CLIP1-211ENST00000539080 COPS6Q7L5N1 327 aa24.66■■□□□ 1.54
CLIP1-211ENST00000539080 DBF4Q9UBU7 674 aaPredicted RBP24.66■■□□□ 1.54
CLIP1-211ENST00000539080 ANKRD36CQ5JPF3 1778 aa24.66■■□□□ 1.54
CLIP1-211ENST00000539080 RIC1Q4ADV7 1423 aa24.66■■□□□ 1.54
CLIP1-211ENST00000539080 UBN2Q6ZU65 1347 aa24.65■■□□□ 1.54
CLIP1-211ENST00000539080 NPR1P16066 1061 aa24.65■■□□□ 1.54
CLIP1-211ENST00000539080 HSP90AB3PQ58FF7 597 aa24.65■■□□□ 1.54
CLIP1-211ENST00000539080 XAGE3Q8WTP9 111 aa24.65■■□□□ 1.54
CLIP1-211ENST00000539080 CHPF2Q9P2E5 772 aa24.65■■□□□ 1.54
CLIP1-211ENST00000539080 GPTP24298 496 aa24.64■■□□□ 1.54
CLIP1-211ENST00000539080 PPP1R42Q7Z4L9 355 aa24.64■■□□□ 1.54
CLIP1-211ENST00000539080 CHMP4AQ9BY43 222 aa24.64■■□□□ 1.54
CLIP1-211ENST00000539080 SOGA3Q5TF21 947 aa24.63■■□□□ 1.53
CLIP1-211ENST00000539080 WWC1Q8IX03 1113 aa24.63■■□□□ 1.53
CLIP1-211ENST00000539080 CACNA1SQ13698 1873 aa24.63■■□□□ 1.53
CLIP1-211ENST00000539080 AIMP1Q12904 312 aaKnown RBP24.62■■□□□ 1.53
CLIP1-211ENST00000539080 SUSD4Q5VX71 490 aa24.62■■□□□ 1.53
CLIP1-211ENST00000539080 PRPF40BQ6NWY9 871 aaKnown RBP24.62■■□□□ 1.53
CLIP1-211ENST00000539080 HYPKQ9NX55 129 aa24.62■■□□□ 1.53
CLIP1-211ENST00000539080 RNF181Q9P0P0 153 aa24.62■■□□□ 1.53
CLIP1-211ENST00000539080 SLX4Q8IY92 1834 aa24.62■■□□□ 1.53
CLIP1-211ENST00000539080 TNRC6CQ9HCJ0 1690 aaKnown RBP24.62■■□□□ 1.53
CLIP1-211ENST00000539080 FER1L6Q2WGJ9 1857 aa24.62■■□□□ 1.53
CLIP1-211ENST00000539080 RNF123Q5XPI4 1314 aa24.61■■□□□ 1.53
CLIP1-211ENST00000539080 ZC3H4Q9UPT8 1303 aaKnown RBP24.61■■□□□ 1.53
CLIP1-211ENST00000539080 C21orf2O43822 256 aa24.61■■□□□ 1.53
CLIP1-211ENST00000539080 NTSR2O95665 410 aa24.61■■□□□ 1.53
CLIP1-211ENST00000539080 LMNB1P20700 586 aa24.61■■□□□ 1.53
CLIP1-211ENST00000539080 C1QTNF8P60827 252 aa24.61■■□□□ 1.53
CLIP1-211ENST00000539080 NUTM1Q86Y26 1132 aa24.61■■□□□ 1.53
CLIP1-211ENST00000539080 ZNF526Q8TF50 670 aaPredicted RBP24.61■■□□□ 1.53
CLIP1-211ENST00000539080 ABCC12Q96J65 1359 aa24.61■■□□□ 1.53
CLIP1-211ENST00000539080 IL16Q14005 1332 aa24.61■■□□□ 1.53
CLIP1-211ENST00000539080 ALDH1B1P30837 517 aa24.6■■□□□ 1.53
CLIP1-211ENST00000539080 RASSF7Q02833 373 aa24.6■■□□□ 1.53
CLIP1-211ENST00000539080 CRY2Q49AN0 593 aa24.6■■□□□ 1.53
CLIP1-211ENST00000539080 ERFEQ4G0M1 354 aa24.6■■□□□ 1.53
CLIP1-211ENST00000539080 NFKBIEO00221 500 aa24.59■■□□□ 1.53
CLIP1-211ENST00000539080 PLBD2Q8NHP8 589 aa24.59■■□□□ 1.53
CLIP1-211ENST00000539080 LTBP3Q9NS15 1303 aa24.59■■□□□ 1.53
CLIP1-211ENST00000539080 TCIRG1Q13488 830 aa24.58■■□□□ 1.53
CLIP1-211ENST00000539080 UTP14AQ9BVJ6 771 aaKnown RBP24.58■■□□□ 1.53
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms