RNA–Protein interactions for RNA: ENST00000537004.5

CLIP1-208, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,000 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-208ENST00000537004 NPM2Q86SE8 214 aaKnown RBP15.29■□□□□ 0.04
CLIP1-208ENST00000537004 A0A087WZG4 1122 aa15.28■□□□□ 0.04
CLIP1-208ENST00000537004 CAMTA2O94983 1202 aa15.28■□□□□ 0.04
CLIP1-208ENST00000537004 DZIP3Q86Y13 1208 aaKnown RBP15.28■□□□□ 0.04
CLIP1-208ENST00000537004 C10orf71Q711Q0 1435 aa15.28■□□□□ 0.04
CLIP1-208ENST00000537004 DPEP1P16444 411 aa15.27■□□□□ 0.03
CLIP1-208ENST00000537004 CCDC24Q8N4L8 307 aa15.27■□□□□ 0.03
CLIP1-208ENST00000537004 PXDNLA1KZ92 1463 aa15.27■□□□□ 0.03
CLIP1-208ENST00000537004 CHL1O00533 1208 aa15.26■□□□□ 0.03
CLIP1-208ENST00000537004 SERPINB2P05120 415 aa15.26■□□□□ 0.03
CLIP1-208ENST00000537004 MYL6BP14649 208 aa15.26■□□□□ 0.03
CLIP1-208ENST00000537004 IL16Q14005 1332 aa15.26■□□□□ 0.03
CLIP1-208ENST00000537004 EIF2S2P20042 333 aaKnown RBP15.26■□□□□ 0.03
CLIP1-208ENST00000537004 CHRNA5P30532 468 aa15.26■□□□□ 0.03
CLIP1-208ENST00000537004 NECTIN2Q92692 538 aa15.26■□□□□ 0.03
CLIP1-208ENST00000537004 ANP32EQ9BTT0 268 aa15.26■□□□□ 0.03
CLIP1-208ENST00000537004 FANCIQ9NVI1 1328 aa15.26■□□□□ 0.03
CLIP1-208ENST00000537004 KDM3BQ7LBC6 1761 aa15.26■□□□□ 0.03
CLIP1-208ENST00000537004 KCNA3P22001 575 aa15.25■□□□□ 0.03
CLIP1-208ENST00000537004 TGFB2P61812 414 aa15.25■□□□□ 0.03
CLIP1-208ENST00000537004 ANXA1P04083 346 aa15.24■□□□□ 0.03
CLIP1-208ENST00000537004 RARSP54136 660 aaKnown RBP15.24■□□□□ 0.03
CLIP1-208ENST00000537004 TSR2Q969E8 191 aaKnown RBP15.24■□□□□ 0.03
CLIP1-208ENST00000537004 CARMIL3Q8ND23 1372 aa15.23■□□□□ 0.03
CLIP1-208ENST00000537004 HLFQ16534 295 aa15.23■□□□□ 0.03
CLIP1-208ENST00000537004 PROSER3Q2NL68 480 aa15.23■□□□□ 0.03
CLIP1-208ENST00000537004 TTLL7Q6ZT98 887 aa15.23■□□□□ 0.03
CLIP1-208ENST00000537004 BABAM1Q9NWV8 329 aa15.23■□□□□ 0.03
CLIP1-208ENST00000537004 BCS1LQ9Y276 419 aa15.23■□□□□ 0.03
CLIP1-208ENST00000537004 RBM19Q9Y4C8 960 aaKnown RBP15.22■□□□□ 0.03
CLIP1-208ENST00000537004 GRIN3BO60391 1043 aa15.22■□□□□ 0.03
CLIP1-208ENST00000537004 PDIA6Q15084 440 aa15.22■□□□□ 0.03
CLIP1-208ENST00000537004 CFAP44Q96MT7 982 aa15.22■□□□□ 0.03
CLIP1-208ENST00000537004 SETDB2Q96T68 719 aa15.22■□□□□ 0.03
CLIP1-208ENST00000537004 MBIPQ9NS73 344 aa15.22■□□□□ 0.03
CLIP1-208ENST00000537004 CT47B1P0C2W7 299 aaPredicted RBP15.21■□□□□ 0.03
CLIP1-208ENST00000537004 PDE3AQ14432 1141 aa15.21■□□□□ 0.03
CLIP1-208ENST00000537004 FAM177BA6PVY3 158 aa15.21■□□□□ 0.02
CLIP1-208ENST00000537004 PRR5LQ6MZQ0 368 aa15.21■□□□□ 0.02
CLIP1-208ENST00000537004 N4BP2Q86UW6 1770 aaPredicted RBP15.21■□□□□ 0.02
CLIP1-208ENST00000537004 ZNF853P0CG23 659 aa15.2■□□□□ 0.02
CLIP1-208ENST00000537004 EXOSC9Q06265 439 aaKnown RBP15.2■□□□□ 0.02
CLIP1-208ENST00000537004 LRP10Q7Z4F1 713 aa15.2■□□□□ 0.02
CLIP1-208ENST00000537004 ZBTB3Q9H5J0 574 aa15.2■□□□□ 0.02
CLIP1-208ENST00000537004 KIF13BQ9NQT8 1826 aa15.19■□□□□ 0.02
CLIP1-208ENST00000537004 CLEC4GQ6UXB4 293 aa15.19■□□□□ 0.02
CLIP1-208ENST00000537004 FRAT1Q92837 279 aaPredicted RBP15.19■□□□□ 0.02
CLIP1-208ENST00000537004 NIP7Q9Y221 180 aaKnown RBP eCLIP15.19■□□□□ 0.02
CLIP1-208ENST00000537004 KIAA1551Q9HCM1 1747 aa15.19■□□□□ 0.02
CLIP1-208ENST00000537004 SCN7AQ01118 1682 aa15.19■□□□□ 0.02
CLIP1-208ENST00000537004 ELL2O00472 640 aaPredicted RBP15.19■□□□□ 0.02
CLIP1-208ENST00000537004 BCL2L13Q9BXK5 485 aa15.19■□□□□ 0.02
CLIP1-208ENST00000537004 PIM2Q9P1W9 311 aa15.19■□□□□ 0.02
CLIP1-208ENST00000537004 NPHP1O15259 732 aa15.18■□□□□ 0.02
CLIP1-208ENST00000537004 CNBD1Q8NA66 436 aa15.18■□□□□ 0.02
CLIP1-208ENST00000537004 ZNF784Q8NCA9 323 aaPredicted RBP15.18■□□□□ 0.02
CLIP1-208ENST00000537004 ZNF652Q9Y2D9 606 aa15.18■□□□□ 0.02
CLIP1-208ENST00000537004 CALD1Q05682 793 aaKnown RBP15.17■□□□□ 0.02
CLIP1-208ENST00000537004 AIMP1Q12904 312 aaKnown RBP15.17■□□□□ 0.02
CLIP1-208ENST00000537004 NBPF5PQ86XG9 351 aaPredicted RBP15.17■□□□□ 0.02
CLIP1-208ENST00000537004 IFT57Q9NWB7 429 aa15.17■□□□□ 0.02
CLIP1-208ENST00000537004 AFDNP55196 1824 aaKnown RBP15.17■□□□□ 0.02
CLIP1-208ENST00000537004 MAP3K15Q6ZN16 1313 aa15.17■□□□□ 0.02
CLIP1-208ENST00000537004 LAMB4A4D0S4 1761 aa15.17■□□□□ 0.02
CLIP1-208ENST00000537004 GPTP24298 496 aa15.17■□□□□ 0.02
CLIP1-208ENST00000537004 C2CD5Q86YS7 1000 aa15.17■□□□□ 0.02
CLIP1-208ENST00000537004 PANK1Q8TE04 598 aa15.17■□□□□ 0.02
CLIP1-208ENST00000537004 CHPF2Q9P2E5 772 aa15.17■□□□□ 0.02
CLIP1-208ENST00000537004 DALRD3Q5D0E6 543 aaKnown RBP15.16■□□□□ 0.02
CLIP1-208ENST00000537004 HDGFL1Q5TGJ6 251 aa15.16■□□□□ 0.02
CLIP1-208ENST00000537004 KIF6Q6ZMV9 814 aa15.16■□□□□ 0.02
CLIP1-208ENST00000537004 GNAI1P63096 354 aa15.16■□□□□ 0.02
CLIP1-208ENST00000537004 ARHGAP27Q6ZUM4 889 aa15.16■□□□□ 0.02
CLIP1-208ENST00000537004 COPS6Q7L5N1 327 aa15.16■□□□□ 0.02
CLIP1-208ENST00000537004 C8orf58Q8NAV2 365 aa15.16■□□□□ 0.02
CLIP1-208ENST00000537004 ERBB4Q15303 1308 aa15.15■□□□□ 0.02
CLIP1-208ENST00000537004 KDM2BQ8NHM5 1336 aa15.15■□□□□ 0.02
CLIP1-208ENST00000537004 NRXN2Q9P2S2 1712 aa15.15■□□□□ 0.02
CLIP1-208ENST00000537004 ERVV-1B6SEH8 477 aa15.15■□□□□ 0.02
CLIP1-208ENST00000537004 XAGE3Q8WTP9 111 aa15.15■□□□□ 0.02
CLIP1-208ENST00000537004 ZNF428Q96B54 188 aa15.15■□□□□ 0.02
CLIP1-208ENST00000537004 BRIP1Q9BX63 1249 aa15.15■□□□□ 0.02
CLIP1-208ENST00000537004 H0YIN7 160 aa15.14■□□□□ 0.01
CLIP1-208ENST00000537004 COG6Q9Y2V7 657 aa15.14■□□□□ 0.01
CLIP1-208ENST00000537004 BCORQ6W2J9 1755 aa15.14■□□□□ 0.01
CLIP1-208ENST00000537004 UBN2Q6ZU65 1347 aa15.14■□□□□ 0.01
CLIP1-208ENST00000537004 NUTM1Q86Y26 1132 aa15.14■□□□□ 0.01
CLIP1-208ENST00000537004 TSPYL6Q8N831 410 aa15.14■□□□□ 0.01
CLIP1-208ENST00000537004 ZNF622Q969S3 477 aaKnown RBP eCLIP15.14■□□□□ 0.018e-7■□□□□ 10.9
CLIP1-208ENST00000537004 DDX21Q9NR30 783 aaKnown RBP eCLIP15.14■□□□□ 0.01
CLIP1-208ENST00000537004 SMC4Q9NTJ3 1288 aa15.14■□□□□ 0.01
CLIP1-208ENST00000537004 ST5P78524 1137 aa15.13■□□□□ 0.01
CLIP1-208ENST00000537004 CENPQQ7L2Z9 268 aaPredicted RBP15.13■□□□□ 0.01
CLIP1-208ENST00000537004 SSH1Q8WYL5 1049 aa15.13■□□□□ 0.01
CLIP1-208ENST00000537004 RLBP1P12271 317 aa15.12■□□□□ 0.01
CLIP1-208ENST00000537004 TPTE2Q6XPS3 522 aa15.12■□□□□ 0.01
CLIP1-208ENST00000537004 GIGYF2Q6Y7W6 1299 aaKnown RBP15.12■□□□□ 0.01
CLIP1-208ENST00000537004 TNNQ9UQP3 1299 aa15.12■□□□□ 0.01
CLIP1-208ENST00000537004 CHD4Q14839 1912 aa15.12■□□□□ 0.01
CLIP1-208ENST00000537004 HOXB7P09629 217 aa15.12■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms