RNA–Protein interactions for RNA: ENST00000533196.1

SMPD1-209, Transcript of sphingomyelin phosphodiesterase 1, humanhuman

TSL 3

Gene SMPD1, Length 425 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD1-209ENST00000533196 C9orf131Q5VYM1 1079 aa30.79■■■□□ 2.52
SMPD1-209ENST00000533196 NBPF5PQ86XG9 351 aaPredicted RBP30.77■■■□□ 2.52
SMPD1-209ENST00000533196 COL11A2P13942 1736 aaPredicted RBP30.76■■■□□ 2.52
SMPD1-209ENST00000533196 ERVV-1B6SEH8 477 aa30.76■■■□□ 2.51
SMPD1-209ENST00000533196 CCDC146Q8IYE0 955 aa30.76■■■□□ 2.51
SMPD1-209ENST00000533196 ADAMTS8Q9UP79 889 aa30.76■■■□□ 2.51
SMPD1-209ENST00000533196 TPTE2Q6XPS3 522 aa30.75■■■□□ 2.51
SMPD1-209ENST00000533196 NIP7Q9Y221 180 aaKnown RBP eCLIP30.75■■■□□ 2.51
SMPD1-209ENST00000533196 NUP98P52948 1817 aa30.75■■■□□ 2.51
SMPD1-209ENST00000533196 ZNF622Q969S3 477 aaKnown RBP eCLIP30.74■■■□□ 2.51
SMPD1-209ENST00000533196 CCDC24Q8N4L8 307 aa30.73■■■□□ 2.51
SMPD1-209ENST00000533196 RNF181Q9P0P0 153 aa30.73■■■□□ 2.51
SMPD1-209ENST00000533196 RRP7AQ9Y3A4 280 aaKnown RBP30.73■■■□□ 2.51
SMPD1-209ENST00000533196 ZC3H4Q9UPT8 1303 aaKnown RBP30.73■■■□□ 2.51
SMPD1-209ENST00000533196 SENP3-EIF4A1A0A087X0R7 540 aa30.72■■■□□ 2.51
SMPD1-209ENST00000533196 NEUROD2Q15784 382 aa30.72■■■□□ 2.51
SMPD1-209ENST00000533196 STYK1Q6J9G0 422 aa30.72■■■□□ 2.51
SMPD1-209ENST00000533196 KIF6Q6ZMV9 814 aa30.72■■■□□ 2.51
SMPD1-209ENST00000533196 CNKSR1Q969H4 720 aa30.72■■■□□ 2.51
SMPD1-209ENST00000533196 MAP3K15Q6ZN16 1313 aa30.72■■■□□ 2.51
SMPD1-209ENST00000533196 KIF3CO14782 793 aa30.71■■■□□ 2.51
SMPD1-209ENST00000533196 HLFQ16534 295 aa30.71■■■□□ 2.51
SMPD1-209ENST00000533196 MASTLQ96GX5 879 aa30.71■■■□□ 2.51
SMPD1-209ENST00000533196 ARFGEF2Q9Y6D5 1785 aa30.71■■■□□ 2.51
SMPD1-209ENST00000533196 SRGNP10124 158 aa30.7■■■□□ 2.51
SMPD1-209ENST00000533196 LMNB1P20700 586 aa30.69■■■□□ 2.5
SMPD1-209ENST00000533196 NGEFQ8N5V2 710 aa30.69■■■□□ 2.5
SMPD1-209ENST00000533196 TRIM35Q9UPQ4 493 aa30.69■■■□□ 2.5
SMPD1-209ENST00000533196 CCDC88AQ3V6T2 1871 aa30.68■■■□□ 2.5
SMPD1-209ENST00000533196 KLRG2A4D1S0 409 aaPredicted RBP30.68■■■□□ 2.5
SMPD1-209ENST00000533196 CHL1O00533 1208 aa30.68■■■□□ 2.5
SMPD1-209ENST00000533196 MYL6BP14649 208 aa30.68■■■□□ 2.5
SMPD1-209ENST00000533196 FER1L6Q2WGJ9 1857 aa30.67■■■□□ 2.5
SMPD1-209ENST00000533196 KDM2BQ8NHM5 1336 aa30.67■■■□□ 2.5
SMPD1-209ENST00000533196 RASSF7Q02833 373 aa30.66■■■□□ 2.5
SMPD1-209ENST00000533196 SOGA3Q5TF21 947 aa30.66■■■□□ 2.5
SMPD1-209ENST00000533196 TTLL7Q6ZT98 887 aa30.66■■■□□ 2.5
SMPD1-209ENST00000533196 NYXQ9GZU5 481 aa30.66■■■□□ 2.5
SMPD1-209ENST00000533196 SLX4Q8IY92 1834 aa30.65■■■□□ 2.5
SMPD1-209ENST00000533196 CACNA1SQ13698 1873 aa30.65■■■□□ 2.5
SMPD1-209ENST00000533196 IBTKQ9P2D0 1353 aaPredicted RBP30.65■■■□□ 2.5
SMPD1-209ENST00000533196 NFKBIEO00221 500 aa30.64■■■□□ 2.5
SMPD1-209ENST00000533196 EIF2S2P20042 333 aaKnown RBP30.64■■■□□ 2.5
SMPD1-209ENST00000533196 C21orf2O43822 256 aa30.63■■■□□ 2.49
SMPD1-209ENST00000533196 NPR1P16066 1061 aa30.63■■■□□ 2.49
SMPD1-209ENST00000533196 GTF2E1P29083 439 aaPredicted RBP30.63■■■□□ 2.49
SMPD1-209ENST00000533196 PDIA6Q15084 440 aa30.63■■■□□ 2.49
SMPD1-209ENST00000533196 PRPF40BQ6NWY9 871 aaKnown RBP30.62■■■□□ 2.49
SMPD1-209ENST00000533196 GIGYF2Q6Y7W6 1299 aaKnown RBP30.62■■■□□ 2.49
SMPD1-209ENST00000533196 LRP10Q7Z4F1 713 aa30.62■■■□□ 2.49
SMPD1-209ENST00000533196 DICER1Q9UPY3 1922 aaKnown RBP30.62■■■□□ 2.49
SMPD1-209ENST00000533196 TOMM70O94826 608 aa30.61■■■□□ 2.49
SMPD1-209ENST00000533196 ZBTB3Q9H5J0 574 aa30.61■■■□□ 2.49
SMPD1-209ENST00000533196 NMRK2Q9NPI5 230 aa30.61■■■□□ 2.49
SMPD1-209ENST00000533196 LTBP3Q9NS15 1303 aa30.61■■■□□ 2.49
SMPD1-209ENST00000533196 FAM177BA6PVY3 158 aa30.6■■■□□ 2.49
SMPD1-209ENST00000533196 HOXB7P09629 217 aa30.6■■■□□ 2.49
SMPD1-209ENST00000533196 CFAP44Q96MT7 982 aa30.6■■■□□ 2.49
SMPD1-209ENST00000533196 TNRC6CQ9HCJ0 1690 aaKnown RBP30.6■■■□□ 2.49
SMPD1-209ENST00000533196 RIC1Q4ADV7 1423 aa30.59■■■□□ 2.49
SMPD1-209ENST00000533196 ZNF34Q8IZ26 560 aa30.59■■■□□ 2.49
SMPD1-209ENST00000533196 TIAM2Q8IVF5 1701 aa30.59■■■□□ 2.49
SMPD1-209ENST00000533196 PRELPP51888 382 aa30.58■■■□□ 2.49
SMPD1-209ENST00000533196 LAS1LQ9Y4W2 734 aaKnown RBP30.58■■■□□ 2.49
SMPD1-209ENST00000533196 PARP10Q53GL7 1025 aa30.57■■■□□ 2.48
SMPD1-209ENST00000533196 TAOK3Q9H2K8 898 aa30.57■■■□□ 2.48
SMPD1-209ENST00000533196 ZNF219Q9P2Y4 722 aaPredicted RBP30.57■■■□□ 2.48
SMPD1-209ENST00000533196 HSPA6P17066 643 aa30.56■■■□□ 2.48
SMPD1-209ENST00000533196 ALDH1B1P30837 517 aa30.56■■■□□ 2.48
SMPD1-209ENST00000533196 CALD1Q05682 793 aaKnown RBP30.56■■■□□ 2.48
SMPD1-209ENST00000533196 DDX21Q9NR30 783 aaKnown RBP eCLIP30.56■■■□□ 2.48
SMPD1-209ENST00000533196 UBN2Q6ZU65 1347 aa30.55■■■□□ 2.48
SMPD1-209ENST00000533196 APAF1O14727 1248 aa30.55■■■□□ 2.48
SMPD1-209ENST00000533196 PROSER3Q2NL68 480 aa30.55■■■□□ 2.48
SMPD1-209ENST00000533196 C7orf43Q8WVR3 580 aa30.55■■■□□ 2.48
SMPD1-209ENST00000533196 GLTPD2A6NH11 291 aa30.54■■■□□ 2.48
SMPD1-209ENST00000533196 GPTP24298 496 aa30.54■■■□□ 2.48
SMPD1-209ENST00000533196 CRY2Q49AN0 593 aa30.54■■■□□ 2.48
SMPD1-209ENST00000533196 HSP90AB3PQ58FF7 597 aa30.54■■■□□ 2.48
SMPD1-209ENST00000533196 PPP1R42Q7Z4L9 355 aa30.54■■■□□ 2.48
SMPD1-209ENST00000533196 CCDC93Q567U6 631 aa30.53■■■□□ 2.48
SMPD1-209ENST00000533196 SUSD4Q5VX71 490 aa30.53■■■□□ 2.48
SMPD1-209ENST00000533196 C16orf71Q8IYS4 520 aaPredicted RBP30.53■■■□□ 2.48
SMPD1-209ENST00000533196 RBM46Q8TBY0 533 aaKnown RBP30.53■■■□□ 2.48
SMPD1-209ENST00000533196 ANKRD36CQ5JPF3 1778 aa30.53■■■□□ 2.48
SMPD1-209ENST00000533196 ABCC12Q96J65 1359 aa30.53■■■□□ 2.48
SMPD1-209ENST00000533196 ZNF316A6NFI3 1004 aaPredicted RBP30.52■■■□□ 2.48
SMPD1-209ENST00000533196 ANXA1P04083 346 aa30.52■■■□□ 2.48
SMPD1-209ENST00000533196 ZNF853P0CG23 659 aa30.52■■■□□ 2.48
SMPD1-209ENST00000533196 ERFEQ4G0M1 354 aa30.52■■■□□ 2.48
SMPD1-209ENST00000533196 NUTM1Q86Y26 1132 aa30.52■■■□□ 2.48
SMPD1-209ENST00000533196 NTSR2O95665 410 aa30.51■■■□□ 2.47
SMPD1-209ENST00000533196 KRT24Q2M2I5 525 aa30.51■■■□□ 2.47
SMPD1-209ENST00000533196 COPS6Q7L5N1 327 aa30.51■■■□□ 2.47
SMPD1-209ENST00000533196 IFT57Q9NWB7 429 aa30.51■■■□□ 2.47
SMPD1-209ENST00000533196 RNF123Q5XPI4 1314 aa30.5■■■□□ 2.47
SMPD1-209ENST00000533196 GNAI1P63096 354 aa30.5■■■□□ 2.47
SMPD1-209ENST00000533196 HDGFL1Q5TGJ6 251 aa30.5■■■□□ 2.47
SMPD1-209ENST00000533196 NECTIN2Q92692 538 aa30.5■■■□□ 2.47
SMPD1-209ENST00000533196 RRAGCQ9HB90 399 aa30.5■■■□□ 2.47
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms