RNA–Protein interactions for RNA: ENST00000520940.1

EXTL3-208, Transcript of exostosin like glycosyltransferase 3, human

TSL 4

Gene EXTL3, Length 542 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
EXTL3-208	ENST00000520940	CCDC24	Q8N4L8	307 aa		13.87	□□□□□ -0.19
EXTL3-208	ENST00000520940	RNF181	Q9P0P0	153 aa		13.87	□□□□□ -0.19
EXTL3-208	ENST00000520940	PDZRN3	Q9UPQ7	1066 aa		13.87	□□□□□ -0.19
EXTL3-208	ENST00000520940	RGL2	O15211	777 aa		13.86	□□□□□ -0.19
EXTL3-208	ENST00000520940	EIF4A1	P60842	406 aa	Known RBP	13.86	□□□□□ -0.19
EXTL3-208	ENST00000520940	ST5	P78524	1137 aa		13.86	□□□□□ -0.19
EXTL3-208	ENST00000520940	RASSF7	Q02833	373 aa		13.86	□□□□□ -0.19
EXTL3-208	ENST00000520940	RIPK4	P57078	832 aa		13.85	□□□□□ -0.19
EXTL3-208	ENST00000520940	ZNF622	Q969S3	477 aa	Known RBP eCLIP	13.85	□□□□□ -0.19
EXTL3-208	ENST00000520940	NBPF5P	Q86XG9	351 aa	Predicted RBP	13.84	□□□□□ -0.19
EXTL3-208	ENST00000520940	ZC3H4	Q9UPT8	1303 aa	Known RBP	13.84	□□□□□ -0.19
EXTL3-208	ENST00000520940	LMNB1	P20700	586 aa		13.83	□□□□□ -0.2
EXTL3-208	ENST00000520940	TMPO	P42166	694 aa	Known RBP	13.83	□□□□□ -0.2
EXTL3-208	ENST00000520940	LMOD3	Q0VAK6	560 aa		13.83	□□□□□ -0.2
EXTL3-208	ENST00000520940	NMRK2	Q9NPI5	230 aa		13.83	□□□□□ -0.2
EXTL3-208	ENST00000520940	TSPYL4	Q9UJ04	414 aa		13.83	□□□□□ -0.2
EXTL3-208	ENST00000520940	NIP7	Q9Y221	180 aa	Known RBP eCLIP	13.83	□□□□□ -0.2
EXTL3-208	ENST00000520940	ANKRD36C	Q5JPF3	1778 aa		13.83	□□□□□ -0.2
EXTL3-208	ENST00000520940	NFKBIE	O00221	500 aa		13.82	□□□□□ -0.2
EXTL3-208	ENST00000520940	SRGN	P10124	158 aa		13.82	□□□□□ -0.2
EXTL3-208	ENST00000520940	PRELP	P51888	382 aa		13.82	□□□□□ -0.2
EXTL3-208	ENST00000520940	WDR43	Q15061	677 aa	Known RBP eCLIP	13.82	□□□□□ -0.2
EXTL3-208	ENST00000520940	STYK1	Q6J9G0	422 aa		13.82	□□□□□ -0.2
EXTL3-208	ENST00000520940	CCDC146	Q8IYE0	955 aa		13.82	□□□□□ -0.2
EXTL3-208	ENST00000520940	KDM2B	Q8NHM5	1336 aa		13.82	□□□□□ -0.2
EXTL3-208	ENST00000520940	C21orf2	O43822	256 aa		13.81	□□□□□ -0.2
EXTL3-208	ENST00000520940	HSPA6	P17066	643 aa		13.81	□□□□□ -0.2
EXTL3-208	ENST00000520940	HLF	Q16534	295 aa		13.81	□□□□□ -0.2
EXTL3-208	ENST00000520940	NGEF	Q8N5V2	710 aa		13.81	□□□□□ -0.2
EXTL3-208	ENST00000520940	CNKSR1	Q969H4	720 aa		13.81	□□□□□ -0.2
EXTL3-208	ENST00000520940	MASTL	Q96GX5	879 aa		13.81	□□□□□ -0.2
EXTL3-208	ENST00000520940	RRP7A	Q9Y3A4	280 aa	Known RBP	13.81	□□□□□ -0.2
EXTL3-208	ENST00000520940	ERBB4	Q15303	1308 aa		13.81	□□□□□ -0.2
EXTL3-208	ENST00000520940	MAP3K15	Q6ZN16	1313 aa		13.81	□□□□□ -0.2
EXTL3-208	ENST00000520940	ERVV-1	B6SEH8	477 aa		13.8	□□□□□ -0.2
EXTL3-208	ENST00000520940	MYL6B	P14649	208 aa		13.8	□□□□□ -0.2
EXTL3-208	ENST00000520940	PRPF40B	Q6NWY9	871 aa	Known RBP	13.8	□□□□□ -0.2
EXTL3-208	ENST00000520940	KIF6	Q6ZMV9	814 aa		13.8	□□□□□ -0.2
EXTL3-208	ENST00000520940	RUNDC1	Q96C34	613 aa		13.8	□□□□□ -0.2
EXTL3-208	ENST00000520940	PRKRIP1	Q9H875	184 aa	Predicted RBP	13.8	□□□□□ -0.2
EXTL3-208	ENST00000520940	BABAM1	Q9NWV8	329 aa		13.8	□□□□□ -0.2
EXTL3-208	ENST00000520940	ZNF219	Q9P2Y4	722 aa	Predicted RBP	13.8	□□□□□ -0.2
EXTL3-208	ENST00000520940	FAM177B	A6PVY3	158 aa		13.79	□□□□□ -0.2
EXTL3-208	ENST00000520940	TOMM70	O94826	608 aa		13.79	□□□□□ -0.2
EXTL3-208	ENST00000520940	NEUROD2	Q15784	382 aa		13.79	□□□□□ -0.2
EXTL3-208	ENST00000520940	TPTE2	Q6XPS3	522 aa		13.79	□□□□□ -0.2
EXTL3-208	ENST00000520940	TTLL7	Q6ZT98	887 aa		13.79	□□□□□ -0.2
EXTL3-208	ENST00000520940	ABCC12	Q96J65	1359 aa		13.79	□□□□□ -0.2
EXTL3-208	ENST00000520940	IBTK	Q9P2D0	1353 aa	Predicted RBP	13.79	□□□□□ -0.2
EXTL3-208	ENST00000520940	WDR90	Q96KV7	1748 aa		13.78	□□□□□ -0.2
EXTL3-208	ENST00000520940	ADAMTS8	Q9UP79	889 aa		13.78	□□□□□ -0.2
EXTL3-208	ENST00000520940	LTBP3	Q9NS15	1303 aa		13.78	□□□□□ -0.2
EXTL3-208	ENST00000520940	KLRG2	A4D1S0	409 aa	Predicted RBP	13.77	□□□□□ -0.21
EXTL3-208	ENST00000520940	NPR1	P16066	1061 aa		13.77	□□□□□ -0.21
EXTL3-208	ENST00000520940	EIF2S2	P20042	333 aa	Known RBP	13.77	□□□□□ -0.21
EXTL3-208	ENST00000520940	SOGA3	Q5TF21	947 aa		13.77	□□□□□ -0.21
EXTL3-208	ENST00000520940	C16orf71	Q8IYS4	520 aa	Predicted RBP	13.77	□□□□□ -0.21
EXTL3-208	ENST00000520940	RBM46	Q8TBY0	533 aa	Known RBP	13.77	□□□□□ -0.21
EXTL3-208	ENST00000520940	NYX	Q9GZU5	481 aa		13.77	□□□□□ -0.21
EXTL3-208	ENST00000520940	TAOK3	Q9H2K8	898 aa		13.77	□□□□□ -0.21
EXTL3-208	ENST00000520940	ZBTB3	Q9H5J0	574 aa		13.77	□□□□□ -0.21
EXTL3-208	ENST00000520940	TRIM35	Q9UPQ4	493 aa		13.77	□□□□□ -0.21
EXTL3-208	ENST00000520940	LAMB2	P55268	1798 aa		13.76	□□□□□ -0.21
EXTL3-208	ENST00000520940	RIC1	Q4ADV7	1423 aa		13.76	□□□□□ -0.21
EXTL3-208	ENST00000520940	UBN2	Q6ZU65	1347 aa		13.76	□□□□□ -0.21
EXTL3-208	ENST00000520940	GLTPD2	A6NH11	291 aa		13.76	□□□□□ -0.21
EXTL3-208	ENST00000520940	GTF2E1	P29083	439 aa	Predicted RBP	13.76	□□□□□ -0.21
EXTL3-208	ENST00000520940	PROSER3	Q2NL68	480 aa		13.76	□□□□□ -0.21
EXTL3-208	ENST00000520940	LRP10	Q7Z4F1	713 aa		13.76	□□□□□ -0.21
EXTL3-208	ENST00000520940	RRAGC	Q9HB90	399 aa		13.76	□□□□□ -0.21
EXTL3-208	ENST00000520940	GPT	P24298	496 aa		13.75	□□□□□ -0.21
EXTL3-208	ENST00000520940	PDIA6	Q15084	440 aa		13.75	□□□□□ -0.21
EXTL3-208	ENST00000520940	NUTM1	Q86Y26	1132 aa		13.75	□□□□□ -0.21
EXTL3-208	ENST00000520940	CHL1	O00533	1208 aa		13.74	□□□□□ -0.21
EXTL3-208	ENST00000520940	ANXA1	P04083	346 aa		13.74	□□□□□ -0.21
EXTL3-208	ENST00000520940	ERFE	Q4G0M1	354 aa		13.74	□□□□□ -0.21
EXTL3-208	ENST00000520940	CCDC93	Q567U6	631 aa		13.74	□□□□□ -0.21
EXTL3-208	ENST00000520940	GIGYF2	Q6Y7W6	1299 aa	Known RBP	13.74	□□□□□ -0.21
EXTL3-208	ENST00000520940	ZNF34	Q8IZ26	560 aa		13.74	□□□□□ -0.21
EXTL3-208	ENST00000520940	C7orf43	Q8WVR3	580 aa		13.74	□□□□□ -0.21
EXTL3-208	ENST00000520940	LAS1L	Q9Y4W2	734 aa	Known RBP	13.74	□□□□□ -0.21
EXTL3-208	ENST00000520940	NTSR2	O95665	410 aa		13.73	□□□□□ -0.21
EXTL3-208	ENST00000520940	APLP1	P51693	650 aa		13.73	□□□□□ -0.21
EXTL3-208	ENST00000520940	KRT24	Q2M2I5	525 aa		13.73	□□□□□ -0.21
EXTL3-208	ENST00000520940	CRY2	Q49AN0	593 aa		13.73	□□□□□ -0.21
EXTL3-208	ENST00000520940	SUSD4	Q5VX71	490 aa		13.73	□□□□□ -0.21
EXTL3-208	ENST00000520940	NECTIN2	Q92692	538 aa		13.73	□□□□□ -0.21
EXTL3-208	ENST00000520940	ALDH1B1	P30837	517 aa		13.72	□□□□□ -0.21
EXTL3-208	ENST00000520940	FSTL1	Q12841	308 aa		13.72	□□□□□ -0.21
EXTL3-208	ENST00000520940	SNED1	Q8TER0	1413 aa		13.72	□□□□□ -0.21
EXTL3-208	ENST00000520940	SCN4A	P35499	1836 aa		13.71	□□□□□ -0.21
EXTL3-208	ENST00000520940	HOXB7	P09629	217 aa		13.71	□□□□□ -0.21
EXTL3-208	ENST00000520940	VEGFA	P15692	232 aa	Predicted RBP	13.71	□□□□□ -0.21
EXTL3-208	ENST00000520940	FKBP4	Q02790	459 aa	Known RBP eCLIP	13.71	□□□□□ -0.21
EXTL3-208	ENST00000520940	PARP10	Q53GL7	1025 aa		13.71	□□□□□ -0.21
EXTL3-208	ENST00000520940	OLFM4	Q6UX06	510 aa		13.71	□□□□□ -0.21
EXTL3-208	ENST00000520940	PPP1R42	Q7Z4L9	355 aa		13.71	□□□□□ -0.21
EXTL3-208	ENST00000520940	DDX60	Q8IY21	1712 aa	Known RBP	13.7	□□□□□ -0.22
EXTL3-208	ENST00000520940	AIMP1	Q12904	312 aa	Known RBP	13.7	□□□□□ -0.22
EXTL3-208	ENST00000520940	HDGFL1	Q5TGJ6	251 aa		13.7	□□□□□ -0.22

Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms