RNA–Protein interactions for RNA: ENST00000515847.1

LIMCH1-222, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 4

Gene LIMCH1, Length 490 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-222ENST00000515847 ZNF853P0CG23 659 aa9.99□□□□□ -0.81
LIMCH1-222ENST00000515847 CANXP27824 592 aaKnown RBP9.99□□□□□ -0.81
LIMCH1-222ENST00000515847 PTGER2P43116 358 aa9.99□□□□□ -0.81
LIMCH1-222ENST00000515847 TRAPPC3LQ5T215 181 aa9.99□□□□□ -0.81
LIMCH1-222ENST00000515847 PLCD3Q8N3E9 789 aa9.99□□□□□ -0.81
LIMCH1-222ENST00000515847 SLC16A10Q8TF71 515 aa9.99□□□□□ -0.81
LIMCH1-222ENST00000515847 ARHGEF1Q92888 912 aaKnown RBP9.99□□□□□ -0.81
LIMCH1-222ENST00000515847 MBIPQ9NS73 344 aa9.99□□□□□ -0.81
LIMCH1-222ENST00000515847 A1BGP04217 495 aa9.98□□□□□ -0.81
LIMCH1-222ENST00000515847 CT47B1P0C2W7 299 aaPredicted RBP9.98□□□□□ -0.81
LIMCH1-222ENST00000515847 PIP4K2AP48426 406 aaPredicted RBP9.98□□□□□ -0.81
LIMCH1-222ENST00000515847 KRT24Q2M2I5 525 aa9.98□□□□□ -0.81
LIMCH1-222ENST00000515847 ZNF428Q96B54 188 aa9.98□□□□□ -0.81
LIMCH1-222ENST00000515847 SGIP1Q9BQI5 828 aa9.98□□□□□ -0.81
LIMCH1-222ENST00000515847 SRP68Q9UHB9 627 aaKnown RBP9.98□□□□□ -0.81
LIMCH1-222ENST00000515847 ZNF330Q9Y3S2 320 aaPredicted RBP9.98□□□□□ -0.81
LIMCH1-222ENST00000515847 SCN7AQ01118 1682 aa9.98□□□□□ -0.81
LIMCH1-222ENST00000515847 RFC4P35249 363 aa9.97□□□□□ -0.81
LIMCH1-222ENST00000515847 EIF5P55010 431 aaKnown RBP9.97□□□□□ -0.81
LIMCH1-222ENST00000515847 STK31Q9BXU1 1019 aa9.97□□□□□ -0.81
LIMCH1-222ENST00000515847 ZNF652Q9Y2D9 606 aa9.97□□□□□ -0.81
LIMCH1-222ENST00000515847 ZNF521Q96K83 1311 aa9.97□□□□□ -0.81
LIMCH1-222ENST00000515847 USP42Q9H9J4 1324 aaKnown RBP9.97□□□□□ -0.81
LIMCH1-222ENST00000515847 FANCIQ9NVI1 1328 aa9.97□□□□□ -0.81
LIMCH1-222ENST00000515847 BCORQ6W2J9 1755 aa9.96□□□□□ -0.81
LIMCH1-222ENST00000515847 NBPF26B4DH59 902 aa9.96□□□□□ -0.82
LIMCH1-222ENST00000515847 RGL2O15211 777 aa9.96□□□□□ -0.82
LIMCH1-222ENST00000515847 GYS1P13807 737 aa9.96□□□□□ -0.82
LIMCH1-222ENST00000515847 POLD1P28340 1107 aa9.96□□□□□ -0.82
LIMCH1-222ENST00000515847 IL6STP40189 918 aaPredicted RBP9.96□□□□□ -0.82
LIMCH1-222ENST00000515847 HDGFL1Q5TGJ6 251 aa9.96□□□□□ -0.82
LIMCH1-222ENST00000515847 CCDC30Q5VVM6 783 aa9.96□□□□□ -0.82
LIMCH1-222ENST00000515847 NBPF10Q6P3W6 841 aaKnown RBP9.96□□□□□ -0.82
LIMCH1-222ENST00000515847 NBPF15Q8N660 670 aa9.96□□□□□ -0.82
LIMCH1-222ENST00000515847 TSR2Q969E8 191 aaKnown RBP9.96□□□□□ -0.82
LIMCH1-222ENST00000515847 PPP1R1BQ9UD71 204 aaPredicted RBP9.96□□□□□ -0.82
LIMCH1-222ENST00000515847 ZPR1O75312 459 aa9.95□□□□□ -0.82
LIMCH1-222ENST00000515847 USPL1Q5W0Q7 1092 aa9.95□□□□□ -0.82
LIMCH1-222ENST00000515847 KIF6Q6ZMV9 814 aa9.95□□□□□ -0.82
LIMCH1-222ENST00000515847 RASEFQ8IZ41 740 aa9.95□□□□□ -0.82
LIMCH1-222ENST00000515847 DBF4Q9UBU7 674 aaPredicted RBP9.95□□□□□ -0.82
LIMCH1-222ENST00000515847 DDX58O95786 925 aaKnown RBP9.94□□□□□ -0.82
LIMCH1-222ENST00000515847 EIF2S2P20042 333 aaKnown RBP9.94□□□□□ -0.82
LIMCH1-222ENST00000515847 TWISTNBQ3B726 338 aaPredicted RBP9.94□□□□□ -0.82
LIMCH1-222ENST00000515847 DUSP27Q5VZP5 1158 aa9.94□□□□□ -0.82
LIMCH1-222ENST00000515847 PELP1Q8IZL8 1130 aaKnown RBP9.94□□□□□ -0.82
LIMCH1-222ENST00000515847 NECTIN2Q92692 538 aa9.94□□□□□ -0.82
LIMCH1-222ENST00000515847 ARXQ96QS3 562 aa9.94□□□□□ -0.82
LIMCH1-222ENST00000515847 HYPKQ9NX55 129 aa9.94□□□□□ -0.82
LIMCH1-222ENST00000515847 NARFQ9UHQ1 456 aa9.94□□□□□ -0.82
LIMCH1-222ENST00000515847 TBC1D2BQ9UPU7 963 aa9.94□□□□□ -0.82
LIMCH1-222ENST00000515847 ANXA1P04083 346 aa9.93□□□□□ -0.82
LIMCH1-222ENST00000515847 MMP10P09238 476 aa9.93□□□□□ -0.82
LIMCH1-222ENST00000515847 MYL6BP14649 208 aa9.93□□□□□ -0.82
LIMCH1-222ENST00000515847 PROSER3Q2NL68 480 aa9.93□□□□□ -0.82
LIMCH1-222ENST00000515847 DZIP3Q86Y13 1208 aaKnown RBP9.93□□□□□ -0.82
LIMCH1-222ENST00000515847 NLGN1Q8N2Q7 840 aa9.93□□□□□ -0.82
LIMCH1-222ENST00000515847 KIF12Q96FN5 646 aa9.93□□□□□ -0.82
LIMCH1-222ENST00000515847 BCL2L12Q9HB09 334 aa9.93□□□□□ -0.82
LIMCH1-222ENST00000515847 DDX21Q9NR30 783 aaKnown RBP eCLIP9.93□□□□□ -0.82
LIMCH1-222ENST00000515847 ELL2O00472 640 aaPredicted RBP9.92□□□□□ -0.82
LIMCH1-222ENST00000515847 CAMTA2O94983 1202 aa9.92□□□□□ -0.82
LIMCH1-222ENST00000515847 SLFN5Q08AF3 891 aa9.92□□□□□ -0.82
LIMCH1-222ENST00000515847 PDIA6Q15084 440 aa9.92□□□□□ -0.82
LIMCH1-222ENST00000515847 HSP90AB3PQ58FF7 597 aa9.92□□□□□ -0.82
LIMCH1-222ENST00000515847 ASTLQ6HA08 431 aaPredicted RBP9.92□□□□□ -0.82
LIMCH1-222ENST00000515847 TSPYL6Q8N831 410 aa9.92□□□□□ -0.82
LIMCH1-222ENST00000515847 C8orf58Q8NAV2 365 aa9.92□□□□□ -0.82
LIMCH1-222ENST00000515847 FHDC1Q9C0D6 1143 aaPredicted RBP9.92□□□□□ -0.82
LIMCH1-222ENST00000515847 ATMINO43313 823 aaPredicted RBP9.91□□□□□ -0.82
LIMCH1-222ENST00000515847 DDR1Q08345 913 aa9.91□□□□□ -0.82
LIMCH1-222ENST00000515847 LRP10Q7Z4F1 713 aa9.91□□□□□ -0.82
LIMCH1-222ENST00000515847 KLHL34Q8N239 644 aa9.91□□□□□ -0.82
LIMCH1-222ENST00000515847 CHPF2Q9P2E5 772 aa9.91□□□□□ -0.82
LIMCH1-222ENST00000515847 EXOSC9Q06265 439 aaKnown RBP9.9□□□□□ -0.82
LIMCH1-222ENST00000515847 NFIXQ14938 502 aa9.9□□□□□ -0.82
LIMCH1-222ENST00000515847 TBC1D9BQ66K14 1250 aa9.9□□□□□ -0.82
LIMCH1-222ENST00000515847 CLEC4GQ6UXB4 293 aa9.9□□□□□ -0.82
LIMCH1-222ENST00000515847 TTLL7Q6ZT98 887 aa9.9□□□□□ -0.82
LIMCH1-222ENST00000515847 ZBTB47Q9UFB7 747 aaPredicted RBP9.9□□□□□ -0.82
LIMCH1-222ENST00000515847 PARP3Q9Y6F1 533 aa9.9□□□□□ -0.82
LIMCH1-222ENST00000515847 AFDNP55196 1824 aaKnown RBP9.9□□□□□ -0.82
LIMCH1-222ENST00000515847 NRXN2Q9P2S2 1712 aa9.9□□□□□ -0.83
LIMCH1-222ENST00000515847 C10orf71Q711Q0 1435 aa9.9□□□□□ -0.83
LIMCH1-222ENST00000515847 NUP98P52948 1817 aa9.89□□□□□ -0.83
LIMCH1-222ENST00000515847 KIF13BQ9NQT8 1826 aa9.89□□□□□ -0.83
LIMCH1-222ENST00000515847 MAP3K15Q6ZN16 1313 aa9.89□□□□□ -0.83
LIMCH1-222ENST00000515847 KIF16BQ96L93 1317 aa9.89□□□□□ -0.83
LIMCH1-222ENST00000515847 ERVV-1B6SEH8 477 aa9.89□□□□□ -0.83
LIMCH1-222ENST00000515847 POLRMTO00411 1230 aaKnown RBP9.89□□□□□ -0.83
LIMCH1-222ENST00000515847 NPHP1O15259 732 aa9.89□□□□□ -0.83
LIMCH1-222ENST00000515847 HSP90B1P14625 803 aaKnown RBP9.89□□□□□ -0.83
LIMCH1-222ENST00000515847 TM4SF1P30408 202 aa9.89□□□□□ -0.83
LIMCH1-222ENST00000515847 ALDH1L2Q3SY69 923 aa9.89□□□□□ -0.83
LIMCH1-222ENST00000515847 BICDL1Q6ZP65 573 aa9.89□□□□□ -0.83
LIMCH1-222ENST00000515847 XAGE3Q8WTP9 111 aa9.89□□□□□ -0.83
LIMCH1-222ENST00000515847 ZBTB3Q9H5J0 574 aa9.89□□□□□ -0.83
LIMCH1-222ENST00000515847 GOLGB1Q14789 3259 aaKnown RBP9.89□□□□□ -0.83
LIMCH1-222ENST00000515847 CARMIL3Q8ND23 1372 aa9.88□□□□□ -0.83
LIMCH1-222ENST00000515847 RNF123Q5XPI4 1314 aa9.88□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms