RNA–Protein interactions for RNA: ENST00000515533.1

CDC42SE2-212, Transcript of CDC42 small effector 2, humanhuman

TSL 4

Gene CDC42SE2, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDC42SE2-212ENST00000515533 SPRYD3Q8NCJ5 442 aa12.36□□□□□ -0.43
CDC42SE2-212ENST00000515533 HMGB2P26583 209 aaKnown RBP12.35□□□□□ -0.43
CDC42SE2-212ENST00000515533 HSP90AB2PQ58FF8 381 aa12.35□□□□□ -0.43
CDC42SE2-212ENST00000515533 C4BP0C0L5 1744 aa12.34□□□□□ -0.43
CDC42SE2-212ENST00000515533 TRIM26Q12899 539 aaPredicted RBP12.34□□□□□ -0.43
CDC42SE2-212ENST00000515533 KIAA1468Q9P260 1216 aa12.34□□□□□ -0.43
CDC42SE2-212ENST00000515533 NSD3Q9BZ95 1437 aa12.34□□□□□ -0.43
CDC42SE2-212ENST00000515533 ZFRQ96KR1 1074 aaKnown RBP12.33□□□□□ -0.44
CDC42SE2-212ENST00000515533 PALLDQ8WX93 1383 aa12.32□□□□□ -0.44
CDC42SE2-212ENST00000515533 PPM1GO15355 546 aaPredicted RBP12.32□□□□□ -0.44
CDC42SE2-212ENST00000515533 MPRIPQ6WCQ1 1025 aa12.32□□□□□ -0.44
CDC42SE2-212ENST00000515533 NYAP1Q6ZVC0 841 aa12.32□□□□□ -0.44
CDC42SE2-212ENST00000515533 COL23A1Q86Y22 540 aaPredicted RBP12.31□□□□□ -0.44
CDC42SE2-212ENST00000515533 FLAD1Q8NFF5 587 aa12.31□□□□□ -0.44
CDC42SE2-212ENST00000515533 NLGN2Q8NFZ4 835 aa12.31□□□□□ -0.44
CDC42SE2-212ENST00000515533 EMILIN1Q9Y6C2 1016 aa12.31□□□□□ -0.44
CDC42SE2-212ENST00000515533 CYP27B1O15528 508 aa12.3□□□□□ -0.44
CDC42SE2-212ENST00000515533 MSL1Q68DK7 614 aa12.3□□□□□ -0.44
CDC42SE2-212ENST00000515533 SMARCC1Q92922 1105 aaPredicted RBP12.3□□□□□ -0.44
CDC42SE2-212ENST00000515533 CARD14Q9BXL6 1004 aa12.3□□□□□ -0.44
CDC42SE2-212ENST00000515533 WBP1LQ9NX94 342 aa12.3□□□□□ -0.44
CDC42SE2-212ENST00000515533 SEPT9Q9UHD8 586 aaPredicted RBP12.29□□□□□ -0.44
CDC42SE2-212ENST00000515533 NCAPD2Q15021 1401 aa12.28□□□□□ -0.44
CDC42SE2-212ENST00000515533 GRIN3BO60391 1043 aa12.28□□□□□ -0.44
CDC42SE2-212ENST00000515533 C6orf132Q5T0Z8 1188 aa12.28□□□□□ -0.44
CDC42SE2-212ENST00000515533 AK7Q96M32 723 aa12.28□□□□□ -0.44
CDC42SE2-212ENST00000515533 TIMELESSQ9UNS1 1208 aa12.28□□□□□ -0.44
CDC42SE2-212ENST00000515533 SPG7Q9UQ90 795 aa12.28□□□□□ -0.44
CDC42SE2-212ENST00000515533 SENP3-EIF4A1A0A087X0R7 540 aa12.27□□□□□ -0.45
CDC42SE2-212ENST00000515533 C1QTNF8P60827 252 aa12.27□□□□□ -0.45
CDC42SE2-212ENST00000515533 EPAS1Q99814 870 aa12.27□□□□□ -0.45
CDC42SE2-212ENST00000515533 POLR3GLQ9BT43 218 aa12.27□□□□□ -0.45
CDC42SE2-212ENST00000515533 VIRMAQ69YN4 1812 aaKnown RBP12.26□□□□□ -0.45
CDC42SE2-212ENST00000515533 GIGYF1O75420 1035 aaPredicted RBP12.26□□□□□ -0.45
CDC42SE2-212ENST00000515533 KCNC4Q03721 635 aa12.26□□□□□ -0.45
CDC42SE2-212ENST00000515533 WASHC2AQ641Q2 1341 aa12.26□□□□□ -0.45
CDC42SE2-212ENST00000515533 TRIM6-TRIM34B2RNG4 842 aa12.25□□□□□ -0.45
CDC42SE2-212ENST00000515533 CAMK2BQ13554 666 aa12.25□□□□□ -0.45
CDC42SE2-212ENST00000515533 PIGBQ92521 554 aa12.25□□□□□ -0.45
CDC42SE2-212ENST00000515533 TMOD3Q9NYL9 352 aa12.25□□□□□ -0.45
CDC42SE2-212ENST00000515533 CD2APQ9Y5K6 639 aa12.25□□□□□ -0.45
CDC42SE2-212ENST00000515533 CEP350Q5VT06 3117 aa12.25□□□□□ -0.45
CDC42SE2-212ENST00000515533 YBX3P16989 372 aaKnown RBP eCLIP12.24□□□□□ -0.45
CDC42SE2-212ENST00000515533 COL5A3P25940 1745 aaPredicted RBP12.24□□□□□ -0.45
CDC42SE2-212ENST00000515533 ZNF831Q5JPB2 1677 aa12.24□□□□□ -0.45
CDC42SE2-212ENST00000515533 IFNL2Q8IZJ0 200 aa12.24□□□□□ -0.45
CDC42SE2-212ENST00000515533 EYA1Q99502 592 aa12.24□□□□□ -0.45
CDC42SE2-212ENST00000515533 KIF13BQ9NQT8 1826 aa12.23□□□□□ -0.45
CDC42SE2-212ENST00000515533 CLSPNQ9HAW4 1339 aa12.23□□□□□ -0.45
CDC42SE2-212ENST00000515533 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP12.23□□□□□ -0.45
CDC42SE2-212ENST00000515533 LOC102724428A0A0B4J2F2 783 aa12.23□□□□□ -0.45
CDC42SE2-212ENST00000515533 PRKCSHP14314 528 aaPredicted RBP12.23□□□□□ -0.45
CDC42SE2-212ENST00000515533 SSFA2P28290 1259 aa12.23□□□□□ -0.45
CDC42SE2-212ENST00000515533 TNNT2P45379 298 aaPredicted RBP12.23□□□□□ -0.45
CDC42SE2-212ENST00000515533 SIK1P57059 783 aa12.23□□□□□ -0.45
CDC42SE2-212ENST00000515533 POLKQ9UBT6 870 aa12.23□□□□□ -0.45
CDC42SE2-212ENST00000515533 N4BP2Q86UW6 1770 aaPredicted RBP12.23□□□□□ -0.45
CDC42SE2-212ENST00000515533 MYH14Q7Z406 1995 aaKnown RBP12.22□□□□□ -0.45
CDC42SE2-212ENST00000515533 DPYSL4O14531 572 aa12.22□□□□□ -0.45
CDC42SE2-212ENST00000515533 PHKG2P15735 406 aa12.22□□□□□ -0.45
CDC42SE2-212ENST00000515533 Q6ZNB5 142 aa12.22□□□□□ -0.45
CDC42SE2-212ENST00000515533 PLEKHG2Q9H7P9 1386 aa12.21□□□□□ -0.45
CDC42SE2-212ENST00000515533 ATP6V1AP38606 617 aa12.21□□□□□ -0.45
CDC42SE2-212ENST00000515533 AMIGO3Q86WK7 504 aa12.21□□□□□ -0.45
CDC42SE2-212ENST00000515533 PCGF6Q9BYE7 350 aa12.21□□□□□ -0.45
CDC42SE2-212ENST00000515533 ASAP1Q9ULH1 1129 aa12.21□□□□□ -0.45
CDC42SE2-212ENST00000515533 C4AP0C0L4 1744 aa12.2□□□□□ -0.46
CDC42SE2-212ENST00000515533 GNPATO15228 680 aa12.2□□□□□ -0.46
CDC42SE2-212ENST00000515533 EIF4A2Q14240 407 aaKnown RBP12.2□□□□□ -0.46
CDC42SE2-212ENST00000515533 LINC00116Q8NCU8 138 aa12.2□□□□□ -0.46
CDC42SE2-212ENST00000515533 CDKN2AIPQ9NXV6 580 aaPredicted RBP12.2□□□□□ -0.46
CDC42SE2-212ENST00000515533 TSR3Q9UJK0 312 aaKnown RBP12.2□□□□□ -0.46
CDC42SE2-212ENST00000515533 BRCA1P38398 1863 aaKnown RBP12.2□□□□□ -0.46
CDC42SE2-212ENST00000515533 SCN11AQ9UI33 1791 aa12.2□□□□□ -0.46
CDC42SE2-212ENST00000515533 ATP10DQ9P241 1426 aa12.2□□□□□ -0.46
CDC42SE2-212ENST00000515533 IGSF1Q8N6C5 1336 aa12.19□□□□□ -0.46
CDC42SE2-212ENST00000515533 EIF4G2P78344 907 aaKnown RBP eCLIP12.19□□□□□ -0.46
CDC42SE2-212ENST00000515533 SMIM5Q71RC9 77 aa12.19□□□□□ -0.46
CDC42SE2-212ENST00000515533 HPS5Q9UPZ3 1129 aa12.19□□□□□ -0.46
CDC42SE2-212ENST00000515533 KIAA1551Q9HCM1 1747 aa12.18□□□□□ -0.46
CDC42SE2-212ENST00000515533 HSP90AB1P08238 724 aaKnown RBP12.18□□□□□ -0.46
CDC42SE2-212ENST00000515533 ITPK1Q13572 414 aa12.18□□□□□ -0.46
CDC42SE2-212ENST00000515533 LRCH3Q96II8 777 aa12.18□□□□□ -0.46
CDC42SE2-212ENST00000515533 ATG3Q9NT62 314 aa12.18□□□□□ -0.46
CDC42SE2-212ENST00000515533 WWC3Q9ULE0 1092 aa12.18□□□□□ -0.46
CDC42SE2-212ENST00000515533 ARFGEF1Q9Y6D6 1849 aa12.17□□□□□ -0.46
CDC42SE2-212ENST00000515533 ERVV-2B6SEH9 535 aa12.17□□□□□ -0.46
CDC42SE2-212ENST00000515533 PLEKHO1Q53GL0 409 aaPredicted RBP12.17□□□□□ -0.46
CDC42SE2-212ENST00000515533 DDX12PQ92771 950 aa12.17□□□□□ -0.46
CDC42SE2-212ENST00000515533 GPBP1L1Q9HC44 474 aaPredicted RBP12.17□□□□□ -0.46
CDC42SE2-212ENST00000515533 CICQ96RK0 1608 aaPredicted RBP12.17□□□□□ -0.46
CDC42SE2-212ENST00000515533 KDRP35968 1356 aa12.17□□□□□ -0.46
CDC42SE2-212ENST00000515533 DCAF5Q96JK2 942 aa12.16□□□□□ -0.46
CDC42SE2-212ENST00000515533 PANK3Q9H999 370 aa12.16□□□□□ -0.46
CDC42SE2-212ENST00000515533 RTCBQ9Y3I0 505 aaKnown RBP12.16□□□□□ -0.46
CDC42SE2-212ENST00000515533 LCE2BO14633 110 aa12.15□□□□□ -0.46
CDC42SE2-212ENST00000515533 MMP10P09238 476 aa12.15□□□□□ -0.46
CDC42SE2-212ENST00000515533 HSPA5P11021 654 aaKnown RBP12.15□□□□□ -0.46
CDC42SE2-212ENST00000515533 AMOTQ4VCS5 1084 aa12.15□□□□□ -0.46
CDC42SE2-212ENST00000515533 TRAPPC3LQ5T215 181 aa12.15□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms