RNA–Protein interactions for RNA: ENST00000515460.5

NUP54-218, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 849 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-218ENST00000515460 DNAAF2Q9NVR5 837 aaKnown RBP9.06□□□□□ -0.96
NUP54-218ENST00000515460 NOD1Q9Y239 953 aa9.06□□□□□ -0.96
NUP54-218ENST00000515460 MAGI1Q96QZ7 1491 aaPredicted RBP9.06□□□□□ -0.96
NUP54-218ENST00000515460 KIF21BO75037 1637 aa9.05□□□□□ -0.96
NUP54-218ENST00000515460 LOC100996750A0A140TA64 210 aa9.05□□□□□ -0.96
NUP54-218ENST00000515460 DCDC2BA2VCK2 349 aa9.05□□□□□ -0.96
NUP54-218ENST00000515460 MSTNO14793 375 aa9.05□□□□□ -0.96
NUP54-218ENST00000515460 TATP17735 454 aaPredicted RBP9.05□□□□□ -0.96
NUP54-218ENST00000515460 GTF2IP78347 998 aa9.05□□□□□ -0.96
NUP54-218ENST00000515460 NCOA4Q13772 614 aa9.05□□□□□ -0.96
NUP54-218ENST00000515460 NLRP8Q86W28 1048 aa9.05□□□□□ -0.96
NUP54-218ENST00000515460 SERBP1Q8NC51 408 aaKnown RBP eCLIP9.05□□□□□ -0.96
NUP54-218ENST00000515460 KRTAP4-6Q9BYQ5 205 aa9.05□□□□□ -0.96
NUP54-218ENST00000515460 MKL2Q9ULH7 1088 aa9.05□□□□□ -0.96
NUP54-218ENST00000515460 IQSEC3Q9UPP2 1182 aaPredicted RBP9.05□□□□□ -0.96
NUP54-218ENST00000515460 NEURL1BA8MQ27 555 aa9.04□□□□□ -0.96
NUP54-218ENST00000515460 MTFR1Q15390 333 aa9.04□□□□□ -0.96
NUP54-218ENST00000515460 GJA3Q9Y6H8 435 aa9.04□□□□□ -0.96
NUP54-218ENST00000515460 BACH1O14867 736 aa9.03□□□□□ -0.96
NUP54-218ENST00000515460 KHNYNO15037 678 aaKnown RBP9.03□□□□□ -0.96
NUP54-218ENST00000515460 MAPTP10636 758 aaKnown RBP9.03□□□□□ -0.96
NUP54-218ENST00000515460 CD33P20138 364 aa9.03□□□□□ -0.96
NUP54-218ENST00000515460 BICDL1Q6ZP65 573 aa9.03□□□□□ -0.96
NUP54-218ENST00000515460 ZNF295-AS1Q8N0V1 137 aa9.03□□□□□ -0.96
NUP54-218ENST00000515460 SPOCK3Q9BQ16 436 aa9.03□□□□□ -0.96
NUP54-218ENST00000515460 ITGB2P05107 769 aa9.02□□□□□ -0.97
NUP54-218ENST00000515460 TBCELQ5QJ74 424 aa9.02□□□□□ -0.97
NUP54-218ENST00000515460 SLCO4C1Q6ZQN7 724 aa9.02□□□□□ -0.97
NUP54-218ENST00000515460 BTBD6Q96KE9 485 aa9.02□□□□□ -0.97
NUP54-218ENST00000515460 ZIC5Q96T25 663 aa9.02□□□□□ -0.97
NUP54-218ENST00000515460 ZNF358Q9NW07 568 aa9.02□□□□□ -0.97
NUP54-218ENST00000515460 HCN2Q9UL51 889 aa9.02□□□□□ -0.97
NUP54-218ENST00000515460 POLA1P09884 1462 aaPredicted RBP9.02□□□□□ -0.97
NUP54-218ENST00000515460 ADCY10Q96PN6 1610 aa9.02□□□□□ -0.97
NUP54-218ENST00000515460 POM121CA8CG34 1229 aa9.01□□□□□ -0.97
NUP54-218ENST00000515460 EPXP11678 715 aa9.01□□□□□ -0.97
NUP54-218ENST00000515460 HSPA1LP34931 641 aa9.01□□□□□ -0.97
NUP54-218ENST00000515460 TXLNAP40222 546 aa9.01□□□□□ -0.97
NUP54-218ENST00000515460 TNP2Q05952 138 aa9.01□□□□□ -0.97
NUP54-218ENST00000515460 NFATC2IPQ8NCF5 419 aa9.01□□□□□ -0.97
NUP54-218ENST00000515460 SCHIP1Q9P0W5 487 aaPredicted RBP9.01□□□□□ -0.97
NUP54-218ENST00000515460 USP17L5A8MUK1 530 aa9□□□□□ -0.97
NUP54-218ENST00000515460 UBAP1LF5GYI3 381 aa9□□□□□ -0.97
NUP54-218ENST00000515460 LZTS3O60299 673 aaPredicted RBP9□□□□□ -0.97
NUP54-218ENST00000515460 ARAFP10398 606 aa9□□□□□ -0.97
NUP54-218ENST00000515460 GRIN2CQ14957 1233 aa9□□□□□ -0.97
NUP54-218ENST00000515460 ZDHHC3Q9NYG2 299 aa9□□□□□ -0.97
NUP54-218ENST00000515460 ADAMTSL3P82987 1691 aa9□□□□□ -0.97
NUP54-218ENST00000515460 KRBA1A5PL33 1030 aa8.99□□□□□ -0.97
NUP54-218ENST00000515460 COL8A1P27658 744 aa8.99□□□□□ -0.97
NUP54-218ENST00000515460 LINC00114Q6XXX2 140 aa8.99□□□□□ -0.97
NUP54-218ENST00000515460 TNS4Q8IZW8 715 aa8.99□□□□□ -0.97
NUP54-218ENST00000515460 ZDHHC1Q8WTX9 485 aa8.99□□□□□ -0.97
NUP54-218ENST00000515460 L3MBTL2Q969R5 705 aa8.99□□□□□ -0.97
NUP54-218ENST00000515460 SUV39H2Q9H5I1 410 aa8.99□□□□□ -0.97
NUP54-218ENST00000515460 PRR12Q9ULL5 1215 aa8.99□□□□□ -0.97
NUP54-218ENST00000515460 ZNF232Q9UNY5 417 aa8.99□□□□□ -0.97
NUP54-218ENST00000515460 ABCC8Q09428 1581 aa8.99□□□□□ -0.97
NUP54-218ENST00000515460 DNMBPQ6XZF7 1577 aa8.99□□□□□ -0.97
NUP54-218ENST00000515460 HOXB4P17483 251 aaPredicted RBP8.98□□□□□ -0.97
NUP54-218ENST00000515460 PCBP4P57723 403 aaKnown RBP8.98□□□□□ -0.97
NUP54-218ENST00000515460 HDGFL1Q5TGJ6 251 aa8.98□□□□□ -0.97
NUP54-218ENST00000515460 ADAMTS19Q8TE59 1207 aa8.98□□□□□ -0.97
NUP54-218ENST00000515460 RGS17Q9UGC6 210 aaPredicted RBP8.98□□□□□ -0.97
NUP54-218ENST00000515460 KLF15Q9UIH9 416 aa8.98□□□□□ -0.97
NUP54-218ENST00000515460 PRG4Q92954 1404 aaPredicted RBP8.97□□□□□ -0.97
NUP54-218ENST00000515460 PRDM2Q13029 1718 aa8.97□□□□□ -0.97
NUP54-218ENST00000515460 GRIN2BQ13224 1484 aa8.97□□□□□ -0.97
NUP54-218ENST00000515460 ADH6P28332 368 aa8.97□□□□□ -0.97
NUP54-218ENST00000515460 LRRC69Q6ZNQ3 347 aa8.97□□□□□ -0.97
NUP54-218ENST00000515460 SLC9A9Q8IVB4 645 aa8.97□□□□□ -0.97
NUP54-218ENST00000515460 STRN4Q9NRL3 753 aa8.97□□□□□ -0.97
NUP54-218ENST00000515460 SOGA1O94964 1423 aa8.97□□□□□ -0.97
NUP54-218ENST00000515460 SHROOM2Q13796 1616 aa8.96□□□□□ -0.98
NUP54-218ENST00000515460 PROCP04070 461 aa8.96□□□□□ -0.98
NUP54-218ENST00000515460 NOS2P35228 1153 aa8.96□□□□□ -0.98
NUP54-218ENST00000515460 TPCN2Q8NHX9 752 aa8.96□□□□□ -0.98
NUP54-218ENST00000515460 NEUROD4Q9HD90 331 aa8.96□□□□□ -0.98
NUP54-218ENST00000515460 MARK1Q9P0L2 795 aa8.96□□□□□ -0.98
NUP54-218ENST00000515460 GNB5O14775 395 aa8.95□□□□□ -0.98
NUP54-218ENST00000515460 TEAD4Q15561 434 aa8.95□□□□□ -0.98
NUP54-218ENST00000515460 FAM182BQ5T319 152 aa8.95□□□□□ -0.98
NUP54-218ENST00000515460 CCDC102BQ68D86 513 aa8.95□□□□□ -0.98
NUP54-218ENST00000515460 CHSY3Q70JA7 882 aa8.95□□□□□ -0.98
NUP54-218ENST00000515460 FCHSD1Q86WN1 690 aa8.95□□□□□ -0.98
NUP54-218ENST00000515460 PROSER2Q86WR7 435 aaPredicted RBP8.95□□□□□ -0.98
NUP54-218ENST00000515460 TRIM50Q86XT4 487 aa8.95□□□□□ -0.98
NUP54-218ENST00000515460 MADDQ8WXG6 1647 aa8.94□□□□□ -0.98
NUP54-218ENST00000515460 USP17L3A6NCW0 530 aa8.94□□□□□ -0.98
NUP54-218ENST00000515460 USP17L4A6NCW7 530 aa8.94□□□□□ -0.98
NUP54-218ENST00000515460 ZBTB7BO15156 539 aaPredicted RBP8.94□□□□□ -0.98
NUP54-218ENST00000515460 FAM157BP0CG42 384 aa8.94□□□□□ -0.98
NUP54-218ENST00000515460 EPHA4P54764 986 aa8.94□□□□□ -0.98
NUP54-218ENST00000515460 SH3PXD2AQ5TCZ1 1133 aa8.94□□□□□ -0.98
NUP54-218ENST00000515460 USP17L2Q6R6M4 530 aa8.94□□□□□ -0.98
NUP54-218ENST00000515460 USP17L1Q7RTZ2 530 aa8.94□□□□□ -0.98
NUP54-218ENST00000515460 KIAA1024Q9UPX6 916 aa8.94□□□□□ -0.98
NUP54-218ENST00000515460 LTBP4Q8N2S1 1624 aa8.94□□□□□ -0.98
NUP54-218ENST00000515460 SERTM1A2A2V5 107 aa8.93□□□□□ -0.98
NUP54-218ENST00000515460 CLDN10P78369 228 aa8.93□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms